HHsearch 1.5 NAME c5fj8N_ FAM FILE c5fj8N_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5fj8N_.a3m DATE Sat Nov 28 08:43:59 2015 LENG 110 match states, 110 columns in multiple alignment FILT 88 out of 92 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.6 EVD 0.3802 -2.3771 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEEEECCSSCCCSCCCCCCCCEECGGGCEECCCSSSCCCCCCCCSCCSSCCCCCEEEETTEEEEEECCCC CEEEECCCCC >sa_dssp EEEDDEEEEDEDCBDDBCDCDEEDEEEDDDCCDEDEDEEEECDEEEEECEDEDDEEDDBBBDCCEEDDCCBCBDEEEEEEEDCEEDEEEEDEEDEEDCDC CBCBCBEDDE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCEEEEEECCEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEECC CCEEEEEEEC >ss_conf 9046777864253677644456510563445776347536777898544999960673999999999861378999854039995337888239998321 7459996209 >Consensus xxxxxexxxlxxdxxxixxxxxxxxxxxxxxxxfQlPxxLpxxxxGxIGkLxVxKSGkvxLxiGxvxxdvxxGxxxxFlQevVxixxxxexxxxxxLGxV xxkxvvtPdi >c5fj8N_ KEAAAELELLNADHQHILRKLKKMNNKPERFMVFQLPTRLPAFERPAVGSIRVHKSGKLSVKIGNVVMDIGKGAETTFLQDVIALSIADDASSAELLGRV DGKIVVTPQI >UniRef50_D1I477(186-283:294) Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1I477_VITVI E=3e-08 s/c=0.61 id=31% cov=77% ------------------------ENQEASMLFLQLPATMPMIKQAAtaetcrleelpsgfMGKMLVYKSGAIKLKLGDTLYDVSPGLDCVFAQDVVAIN --TEDKCCCVLGELKKRAVVTPDV >UniRef50_A4RRD2(79-182:187) Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RRD2_OSTLU E=1e-11 s/c=0.68 id=21% cov=56% -----------------------------------------------LGELKIHADGSAKLYIGNAVFDVMRGTPYQHSEQLARLD--GDRQQCVIMGPT IARMTCVPDV >UniRef50_UPI0000D5703D(227-298:306) PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC4 (RNA polymerase III subunit C4) (DNA-directed RNA polymerase III subunit D) n=1 Tax=Tribolium castaneum RepID=UPI0000D5703D E=6e-11 s/c=0.95 id=23% cov=56% -----------------------------------------------IGKLVIRRSGKMEVHIGRVKYELSPENTFEAREDLATITEgPNGENSIAVLGS VLHNFIMFP-- >UniRef50_C4PZE7(178-274:873) Rab-gap/tbc-related n=1 Tax=Schistosoma mansoni RepID=C4PZE7_SCHMA E=9e-05 s/c=0.49 id=17% cov=75% ----------------------------GRLFTLQLPDKLlppdnEQIKEGLFGKIQLLDNQEVRLVVGDARFNLSCPRPLPIASDVVLVNQDNPELICl ECIGHVEQTMAAVPDL >UniRef50_UPI00019A5D5E(284-362:368) hypothetical protein TTHERM_00142390 n=1 Tax=Tetrahymena thermophila RepID=UPI00019A5D5E E=4e-10 s/c=0.83 id=21% cov=57% ------------------------------------------------GKLRIYSDGSVQFICGQNIFDVTEGVQNNCKQQFVAIDQAKhlfENPTIFNV DNINKKFVIQPNI >UniRef50_Q4N619(132-203:212) Putative uncharacterized protein n=2 Tax=Theileria RepID=Q4N619_THEPA E=6e-16 s/c=1.18 id=26% cov=66% ------------------------------------PSKLEFLPSGQLGKLRIHKSGKIMLHIDGHEFNFLRGNGSTCNQQVAC--HLEQNNEFLFLGNF HNRFVVSPNL >UniRef50_A3GGF0(260-411:412) RNA polymerase III (C) subunit n=3 Tax=Saccharomycetaceae RepID=A3GGF0_PICST E=6e-13 s/c=0.50 id=30% cov=94% --------SLTTESVDVDENTEEIDKPQPKYITMQLPKVLPEYTskstvksesepeeinnddstqsrthiashastlRGQIGHLNIHQSGKFTINIGsNI NLGVSKGVATNFLQELVVIDLDEQEqsedvemmdeegkkvrGRIIRLGEVDGKIIGTPLI >UniRef50_A8B675(231-314:323) Putative uncharacterized protein n=2 Tax=Giardia intestinalis RepID=A8B675_GIALA E=7e-12 s/c=0.85 id=18% cov=76% ------------------GSTDTVSSQQSDVPTVQNKSPITTFGEGKIGRLLRYRSGKVVLVLnGGITMNLTQGNKADFAELLYSLDA--QKQTAHALGP ILGR------- >UniRef50_B6HJ83(468-574:579) Pc21g01870 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6HJ83_PENCW E=6e-23 s/c=1.01 id=31% cov=92% -----EIKREAGDDVEILDNTKPVESKDNSVITAGQPWTLPT---GRVGKLNVHESGRVTLDWGGISMELDRGAPVGFVQEAVILSkappepEEDTAKHV WSMGQLSGKFTVTP-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 0 * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 E 2 * * * 0 * * * * * * * * * * * * * * * * 2 0 * * * * * * 1853 0 0 A 3 550 * * * 2682 * * * * * * * * * * * * 2636 * * 3 0 * * * * * * 2249 0 0 A 4 2764 * * * * * * 2061 * 2747 1698 * * * * * * 2682 * * 4 0 * * * * * * 2249 0 0 A 5 1371 * * * * * * * * * * * 2223 3041 2984 2724 * * * * 5 0 * * * * * * 2382 0 0 E 6 * * * 167 * * * * * * * * * * * 3196 * * * * 6 0 * * * * * * 3229 0 0 L 7 * * * * * * * 2236 3519 4031 * 3631 * * 2266 2806 3754 2904 * * 7 0 * * * * * * 3229 0 0 E 8 4070 * * 1725 * * * * 1321 * * 2662 * * * 3650 * * * * 8 0 * * * * * * 3380 0 0 L 9 * * * 3534 * * * * 1542 2584 * * * * 3543 2858 3875 3163 * * 9 0 * * * * * * 3504 0 0 L 10 * * * 2557 * * * 3135 * 737 3102 * * * * * * * * * 10 0 * * * * * * 3510 0 0 N 11 2365 * 3532 * 2876 * * * * * * 2627 * 4250 3196 4029 2334 * * * 11 0 * * * * * * 3510 0 0 A 12 2864 * 4186 2521 * 3839 * * 4062 * * 4427 * 2602 3304 * 2385 * * * 12 0 * * * * * * 3665 0 0 D 13 * * 536 3912 * * * * * * * * * * * 2035 * * * * 13 0 * * * * * * 3665 0 0 H 14 3451 * 3041 2961 * * 1832 * * * * 4075 * * * 3068 * * * 2328 14 0 * * * * * * 3688 0 0 Q 15 * * 2891 1916 * * * 3318 4446 3029 * * * 4590 3421 * * 2346 * * 15 0 * * * * * * 3688 0 0 H 16 2658 * 3962 3041 * * 2041 * 2308 * * * * * 4526 * 3985 * * 3260 16 0 * * * * * * 3688 0 0 I 17 * * * * * * * 479 * 4204 4446 * 4183 * * * * 2973 * * 17 97 * 3937 * * * * 3688 0 0 L 18 4064 * 2598 * * * * * 3104 2142 4095 * 3890 4452 * 2603 * * 4422 4340 18 0 * * * * 0 * 3590 0 1000 R 19 3698 3566 4248 3427 * 2645 * * 1513 * * 3336 * 4373 4824 * * * * * 19 0 * * * * * * 3962 0 0 K 20 * * 4387 3121 * * * * 2176 4441 3661 2205 2637 * 4598 3796 * * * * 20 0 * * * * * * 4156 0 0 L 21 * * * 4000 * * * 2845 * 1135 4506 * * * * * 1969 4519 * * 21 56 4711 * 0 * * * 4198 1000 0 K 22 4000 * 3187 2563 4436 * * 4924 2642 * * 3323 * * 4711 2694 * 2983 * * 22 55 4752 * 0 * * * 4198 1000 0 K 23 * * 4817 3600 * * * 4462 1525 4790 3800 * 4402 4506 4628 2893 3850 4454 * * 23 54 * 4754 * * * * 4198 0 0 M 24 * * * * * 3832 * 1671 * 2463 2390 * * * * 3490 * 2693 * * 24 0 * * * * 0 * 4221 0 1000 N 25 4490 3931 2614 1919 * 4633 * * 4099 4880 * 2105 * 4923 * 3965 * * * * 25 122 3624 * 2494 282 * * 4250 1625 0 N 26 * * 3976 * * 4923 * * 2606 4099 4652 1627 * 3916 * 1993 * * * * 26 47 4953 * 0 * * * 4250 1000 0 K 27 4597 * 2547 2860 * * * * 2525 3823 * 4595 4555 2526 * 3708 * 5008 * 4633 27 51 4851 * 1000 1000 * * 4250 1000 0 P 28 3616 * 4665 2515 * * * * 3329 * * 4555 1876 3230 4633 4795 3229 * * * 28 53 4795 * 1000 1000 * * 4250 1000 0 E 29 3696 * * 2545 * 1796 * * 4968 * * 2705 4708 4031 4369 3422 * * * 4755 29 0 * * * * * * 4262 0 0 R 30 * * 3454 4097 * 2964 * * 2201 * * * 3972 * 1728 2847 * * * * 30 0 * * * * * * 4262 0 0 F 31 * * * * 1680 * * * 4608 2528 2551 * 4742 * * * * 2982 * 2846 31 46 5001 * 1585 585 * * 4262 1000 0 M 32 * * * * 1902 * * 3785 * 1760 3202 * 4159 * * 3521 * 3149 * * 32 0 * * * * * * 4262 0 0 V 33 * * 3626 * 1757 * * 4770 * 2363 * * * 4815 * * 2280 3425 4121 * 33 0 * * * * * * 4301 0 0 F 34 4960 * * * 888 * * 4017 * 3106 4754 * 4324 * * 5009 3702 4190 * * 34 52 4815 * 1000 1000 * * 4301 1000 0 Q 35 3154 * * * * 3984 * * * * * * * 369 * * 4324 * * * 35 0 * * * * * * 4301 0 0 L 36 4367 * * * 3255 * * 4304 * 854 * 3706 * 4992 * * 3746 4048 * * 36 0 * * * * * * 4331 0 0 P 37 5676 * * * * 5647 5497 * 3742 * * 3850 386 5095 * * * * * * 37 66 4485 * 1000 1000 * * 4597 1000 0 T 38 4508 4739 3504 5680 * * * * 3538 * * 4699 2451 3586 5449 1554 4736 * 5696 * 38 0 * * * * * * 4715 0 0 R 39 3410 * * 4466 4455 5364 * 4725 2395 * * 4993 4438 4724 4538 2755 2790 3162 * * 39 0 * * * * * * 4766 0 0 L 40 * * 4760 * * * * 3468 * 281 5501 * * * * 5188 * * * * 40 86 4111 * 2322 322 * * 4821 1000 0 P 41 4081 * 4447 3516 * * * * 3664 * * * 775 * 5430 3840 5284 5283 * * 41 101 3888 * 4728 55 * * 4707 1469 0 A 42 4119 * 2658 1792 4993 * * 5015 * * 4638 6441 3686 2616 4538 5756 4122 5548 * * 42 147 4823 4023 4095 87 * * 4722 1466 0 F 43 5995 * * * 1744 2925 * 3638 5847 1613 3799 * * * * * * * * 4115 43 117 4066 5761 4773 54 * 0 4806 1606 1715 E 44 * * * 2900 * 4130 5233 * 3086 * * * 1806 4103 2937 3307 3492 * * * 44 287 3457 3488 4524 64 * 0 4823 2390 1974 R 45 4535 4642 4484 1519 * 6056 * * 6112 * * 3736 3800 3390 3420 2885 5466 * * * 45 121 3641 * 4920 48 1448 659 4602 1880 2522 P 46 4411 * * * * 184 * * * * * * 3786 * * * * * * * 46 0 * * * * 2183 359 4648 0 2308 A 47 3630 * * 5893 4477 * 5780 5753 2362 3184 * 4628 * 2367 3577 4697 * * * 2647 47 111 3757 * 4908 49 0 * 4803 2112 2074 V 48 * * * * 4405 * * 1004 * 2647 3839 * * * * * * 2154 * * 48 0 * * * * * * 5120 0 0 G 49 * * * * * 0 * * * * * * * * * * * * * * 49 0 * * * * * * 5172 0 0 S 50 * * * 4011 6331 * 5439 * 777 * * 4603 * 4388 4591 3459 3597 6065 * * 50 0 * * * * * * 5172 0 0 I 51 * * * * * * * 2267 * 760 2860 * * * * * * 3969 * * 51 0 * * * * * * 5183 0 0 R 52 * 5890 6536 6350 * * 5815 5243 3628 2588 * 3007 * 2643 2110 * 4784 3302 * 6060 52 0 * * * * * * 5183 0 0 V 53 * * * * 5236 * * 1289 * 3783 6403 * * * 4900 * * 1164 * * 53 0 * * * * * * 5183 0 0 H 54 * * * * 6426 * 1483 * 5357 3364 6417 * * * 2193 * * * * 1844 54 0 * * * * * * 5183 0 0 K 55 4424 * 4497 4966 * * * * 692 * * * * 3505 2779 5362 * * * * 55 0 * * * * * * 5183 0 0 S 56 * * 3692 5473 * * * * * * * 4497 * * * 225 * * * * 56 0 * * * * * * 5183 0 0 G 57 * * * * * 65 * * * * * * * 4497 * * * * * * 57 0 * * * * * * 5183 0 0 K 58 3621 * * 4497 * * * 5985 1056 * 6413 * * * 1733 3943 * * * * 58 18 * 6368 * * * * 5183 0 0 L 59 3341 6419 * * 6357 * * 2872 * 4499 3093 * * * * 6119 3080 1162 * * 59 0 * * * * 0 * 5172 0 1000 S 60 * * * 2717 6193 * * 6123 2242 5420 4609 * * 4245 3194 2962 2256 4491 * * 60 0 * * * * * * 5183 0 0 V 61 5807 * * * 4437 * * 2940 * 877 2487 * * * * * * 3594 * * 61 0 * * * * * * 5183 0 0 K 62 * * 2426 4234 * * 4454 4076 2247 4165 5258 4952 * 6494 3588 4129 * 2728 * 5127 62 0 * * * * * * 5183 0 0 I 63 * 5362 * * 4788 * * 1686 * 1848 3846 * * * * * * 3516 2366 * 63 18 6309 * 0 * * * 5183 1000 0 G 64 6060 4446 5053 * * 198 * * * * * 5357 * * * * 6277 * * * 64 152 3321 * 1495 632 * * 5183 2901 0 N 65 * * 1674 4280 * 1496 * * 5487 * * 2393 * 4854 5705 * 6123 * * * 65 46 4984 * 1450 657 * * 5185 1981 0 V 66 3276 5393 * * 6342 * 5831 2186 5901 5329 5473 4177 * 6395 * 5898 3094 1539 * 6155 66 0 * * * * * * 5185 0 0 V 67 6972 * 6875 4269 * * * 3475 5009 2885 5264 4724 3584 5901 3396 2940 2906 2951 * 5423 67 0 * * * * * * 5185 0 0 M 68 * * * * 1313 * * * * 2118 2167 * * * * * * * * 2791 68 0 * * * * * * 5185 0 0 D 69 5406 * 988 2165 * 6372 * 6491 4652 5391 * 3469 * 5363 * 6254 5633 6093 * * 69 0 * * * * * * 5185 0 0 I 70 4618 6254 * * 5831 * * 3244 * 1824 4846 * * * * 6155 * 1024 * * 70 0 * * * * * * 5185 0 0 G 71 3291 * 3764 * 6772 3624 5677 * 4961 5198 3815 3963 * 5078 5423 1932 2465 6416 6370 * 71 34 5423 * 0 * * * 5185 1000 0 K 72 4848 3905 6187 3311 * 6199 6175 * 2862 4501 3793 * 2342 4175 3086 3386 5291 6491 * * 72 20 6187 * 0 * * * 5185 1000 0 G 73 4445 * * 5705 * 269 * * * * * 5405 4498 * 6187 5404 * * * * 73 34 5423 * 1000 1000 * * 5185 1000 0 A 74 2277 * 6123 5943 * 6339 * 4788 * 4209 5645 3629 5376 5067 4498 2697 2455 3001 * * 74 0 * * * * * * 5185 0 0 E 75 3274 * 3549 2609 * 3922 5712 * 3587 5405 * 4345 2270 3598 5477 5257 3883 * * * 75 0 * * * * * * 5185 0 0 T 76 3003 2617 * * 4201 5423 * * * 3842 5514 4557 3409 * * 2647 2873 3598 * 5179 76 0 * * * * * * 5185 0 0 T 77 4697 * 3525 4897 * 3443 5160 6612 3421 6093 6130 3161 4143 4672 4445 2435 2816 6931 * * 77 0 * * * * * * 5185 0 0 F 78 5705 3518 * * 563 * 3975 4132 * * 5331 * * * * 6188 * 4845 * 5473 78 0 * * * * * * 5185 0 0 L 79 2435 5902 6360 5419 6443 * 6972 5049 5382 1126 * 4652 5512 * 3955 5594 * 3570 * * 79 21 6081 * 0 * * * 5185 1000 0 Q 80 * 5424 * 2744 * * * * * * * 6289 * 560 * 3460 4460 * * * 80 0 * * * * * * 5185 0 0 D 81 * * 1767 1548 * * 5300 6172 * 6335 * 4094 * 2712 6908 5787 3741 * * * 81 0 * * * * * * 5408 0 0 V 82 2231 * * * 5239 * * 3406 * 1963 * * * * * * * 1287 * * 82 0 * * * * * * 5403 0 0 I 83 2655 * * * * * * 3613 * 4777 3361 * * * * * 6005 782 * 5135 83 0 * * * * * * 5362 0 0 A 84 1630 3836 * * 6373 * 5796 3301 6787 3003 5936 * 7456 * 4983 2791 4591 3296 * * 84 39 * 5236 * * * * 5362 0 0 L 85 3698 6500 * 6204 * * * 1356 * 2077 4939 * * * * * * 2070 * * 85 85 4576 6062 2529 274 * 0 5160 1875 1530 S 86 * 6296 1783 2887 * 6617 4925 * 5321 * * 1892 * 5478 5515 3219 3792 * * * 86 257 5080 2905 2846 216 630 1499 5142 1521 1945 I 87 3041 * 4042 2787 * * 4564 3868 * 3416 4144 * 5885 2880 5983 3628 2934 5620 * 6468 87 211 4710 3355 818 1208 3256 160 5079 1615 3248 A 88 3296 * 2930 4023 6321 3860 5196 4324 4656 4616 5442 3337 2830 * 4902 3707 3828 6557 * 6293 88 85 * 4122 * * 705 1372 5015 0 3616 D 89 5018 * 2140 2133 * 3945 5766 * 3816 * 6479 2728 3236 * 6119 5350 4784 * * 5912 89 278 3715 3338 2843 217 723 1343 5139 2549 3233 D 90 4585 * 3113 1222 * 3684 * * 4335 * * 6103 3369 3914 6249 5220 4662 5076 * * 90 137 4139 4884 2496 282 1457 654 5132 2061 2827 A 91 4121 * 5355 2484 * 3768 * * 2074 * 6044 3594 6641 3435 4084 3887 3302 * * * 91 188 3443 5038 3352 149 259 2608 5084 2737 2778 S 92 5264 * * 6482 * 2235 * * 1925 4136 * 4590 2726 3812 3546 4908 4750 6623 * * 92 39 5243 * 2807 222 * 0 5099 1224 2151 S 93 4397 6688 3728 2468 * 5013 3694 4477 4847 5794 * 5131 6342 3918 3533 2515 3687 6641 * 5336 93 136 3472 * 2985 195 0 * 5101 3001 2151 A 94 2205 2046 6201 * 4631 5053 * 2859 * 3701 3219 * * * * 5339 * 3184 * * 94 65 4514 * 0 * * * 5174 1000 0 E 95 4917 3579 * 3263 4206 6530 5451 3609 * 4988 6858 5179 * 6379 6375 3517 4211 3386 3383 2438 95 0 * * * * * * 5174 0 0 L 96 3614 3731 * * 3966 3482 * 3505 * 3184 * 2513 6282 5376 4106 4012 5533 2862 * * 96 44 5053 * 1000 1000 * * 5174 1611 0 L 97 * * * * * * * 3655 * 626 2190 * * * * * * 4228 * * 97 0 * * * * * * 5174 0 0 G 98 5141 * 5098 * * 145 * * * * * * * * * 4716 * * * * 98 0 * * * * * * 5174 0 0 R 99 * * 4767 2512 * * 3520 * 3009 5376 * 2818 3887 2690 4172 3711 4152 * * * 99 0 * * * * * * 5174 0 0 V 100 * 4864 * * 4892 * * 1645 * 3140 * * * * * 4976 5827 1154 * * 100 0 * * * * * * 5174 0 0 D 101 3738 * 3360 2389 * 5115 3911 5827 3279 4894 3698 3447 * 4627 6019 3576 4352 6912 * 5544 101 0 * * * * * * 5174 0 0 G 102 3742 * 6170 4518 * 1666 3357 * 2212 * * 4394 * 3865 3863 5100 5307 * * * 102 0 * * * * * * 5174 0 0 K 103 6282 * * * 5952 * 4509 * 1321 6079 * 4853 * 5801 1460 6267 4514 4671 * * 103 38 5248 * 0 * * * 5174 1146 0 I 104 3910 * * * 1485 * * 3602 * 2287 3259 * * * * * * 2547 * 6223 104 0 * * * * * * 5167 0 0 V 105 4220 * * * * 6136 * 2069 6216 5156 * 6015 * * * 5203 3518 1011 * 5252 105 0 * * * * * * 5153 0 0 V 106 2550 2724 * * * 6082 * 5089 * 3142 4301 * * * * * * 1090 * * 106 0 * * * * * * 5153 0 0 T 107 3823 * * * 5488 * * 4263 * * * * * 4643 5940 2422 1094 2801 * * 107 0 * * * * * * 5143 0 0 P 108 * * * * * * * * * * * * 0 * * * * * * * 108 0 * * * * * * 5143 0 0 Q 109 * * 1201 3601 * * 4963 * 2923 5348 * 3053 * 4292 5820 3570 5603 * * * 109 0 * * * * * * 4844 0 0 I 110 * * * * * * * 1635 * 1778 * * * * * * * 1372 * * 110 0 * * 0 * * * 4767 0 0 //