HHsearch 1.5 NAME c5eykD_ FAM FILE c5eykD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5eykD_.a3m DATE Thu Feb 9 13:09:00 2017 LENG 26 match states, 26 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.1 EVD 0.5681 5.2893 SEQ >ss_dssp CHHHHHHHHHHHSCCCHHHHTC---- >sa_dssp EEEEDDEEEEEEEEEDDEEDEE---- >ss_pred CHHHHHHHHHHCCCCCHHHHHCCCCC >ss_conf 96799999961485446676412469 >Consensus nllxqairqqyykpxdvdrmygxxxx >c5eykD_ NLLTQAIRQQYYKPIDVDRMYGXXXX >UniRef50_Q0IHP2(830-851:898) Inner centromere protein n=8 Tax=Xenopus RepID=INCE_XENTR E=0.0004 s/c=2.10 id=87% cov=88% NLLAQAIRQQYYKPMDVDRMYG---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * * * * * * * * * 0 * * * * * * * * 1 0 * * * * * * 1065 0 0 L 2 * * * * * * * * * 0 * * * * * * * * * * 2 0 * * * * * * 1065 0 0 L 3 * * * * * * * * * 0 * * * * * * * * * * 3 0 * * * * * * 1065 0 0 T 4 1000 * * * * * * * * * * * * * * * 1000 * * * 4 0 * * * * * * 1065 0 0 Q 5 * * * * * * * * * * * * * 0 * * * * * * 5 0 * * * * * * 1065 0 0 A 6 0 * * * * * * * * * * * * * * * * * * * 6 0 * * * * * * 1065 0 0 I 7 * * * * * * * 0 * * * * * * * * * * * * 7 0 * * * * * * 1065 0 0 R 8 * * * * * * * * * * * * * * 0 * * * * * 8 0 * * * * * * 1065 0 0 Q 9 * * * * * * * * * * * * * 0 * * * * * * 9 0 * * * * * * 1065 0 0 Q 10 * * * * * * * * * * * * * 0 * * * * * * 10 0 * * * * * * 1065 0 0 Y 11 * * * * * * * * * * * * * * * * * * * 0 11 0 * * * * * * 1065 0 0 Y 12 * * * * * * * * * * * * * * * * * * * 0 12 0 * * * * * * 1065 0 0 K 13 * * * * * * * * 0 * * * * * * * * * * * 13 0 * * * * * * 1065 0 0 P 14 * * * * * * * * * * * * 0 * * * * * * * 14 0 * * * * * * 1065 0 0 I 15 * * * * * * * 1000 * * 1000 * * * * * * * * * 15 0 * * * * * * 1065 0 0 D 16 * * 0 * * * * * * * * * * * * * * * * * 16 0 * * * * * * 1065 0 0 V 17 * * * * * * * * * * * * * * * * * 0 * * 17 0 * * * * * * 1065 0 0 D 18 * * 0 * * * * * * * * * * * * * * * * * 18 0 * * * * * * 1065 0 0 R 19 * * * * * * * * * * * * * * 0 * * * * * 19 0 * * * * * * 1065 0 0 M 20 * * * * * * * * * * 0 * * * * * * * * * 20 0 * * * * * * 1065 0 0 Y 21 * * * * * * * * * * * * * * * * * * * 0 21 0 * * * * * * 1065 0 0 G 22 * * * * * 0 * * * * * * * * * * * * * * 22 0 * * * * * * 1065 0 0 X 23 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 23 * * * * * * * 1000 0 0 X 24 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 24 * * * * * * * 1000 0 0 X 25 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 25 * * * * * * * 1000 0 0 X 26 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 26 0 * * 0 * * * 1000 0 0 //