HHsearch 1.5 NAME c5epwB_ FAM FILE c5epwB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5epwB_.a3m DATE Tue Feb 28 11:13:51 2017 LENG 110 match states, 110 columns in multiple alignment FILT 18 out of 22 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.5 EVD 0.4617 2.3782 SEQ >ss_dssp CCGGGSCGGGCCCCSSSCHHHHTCCCBTTBCBCCHHHHHHGGGSTTHHHHHTTSCCHHHHHHSSEEEEEEETTEEEEEEECCCCCCTTCTTHHHHHHHBT GGGSCCCCCC >sa_dssp EDCDDDDDEDCDBCEECCBEDADBECDEEDCDBCEDBCDBBCDAECCEDBDEBDCEEDCCEEECEDDEDEEEEEEDECDDCEDECDEECECCECCDEBDC BCDDEEDEEE >ss_pred CCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHC CCCCHHHHCC >ss_conf 9510042000068999733588506788787785889984104737657988488978853222212444798489999988984777889899999600 2258777329 >Consensus xxxxxKprxKRtxxkxxxVxqxFGxRxxxxNFGdxxxvkxGvxdxxxpqlAelvPxxxAxlFgSxixxkexxdxvxltyxxxxxvxkxdpnxexxxexln Ayxxpsxxxx >c5epwB_ PSQLKKPRWKRVPTREENVIQCFGPRDFNHNMGDSDLVQNGVDAKGFPQLAELIPNQAALFFDSEVSTDEVGDNVQITYTYKMLVAKDNKNLPKFIEQIS AFTKPSSIKE >UniRef50_P59713(268-379:457) Nucleoprotein n=40 Tax=Coronavirinae RepID=NCAP_CVPV E=5e-15 s/c=0.73 id=32% cov=91% ---LNKPRQKRTPNKQCPVQQCFGKRGPNQNFGGPEMLKLGTSDPQFPILAELAPTAGAFFFGSKLElvkknsvgvDEPTKDVYELQYSGAVRFDSTLPG FETIMkvlrENLNAY-------- >UniRef50_B6VDZ1(191-301:352) Nucleocapsid phosphoprotein n=4 Tax=Avian coronavirus RepID=B6VDZ1_9GAMC E=2e-06 s/c=0.49 id=25% cov=93% ---------KRTLLKGKTISQVFGTRSkAGANVGSADSEKAGMADSRIMTLARFVPGVQELLFAGHLDSNfQQDGALTLTFTYSITVKQDSPDYDRLKDA LNtvvnqtyeAPTKPQKVKK >UniRef50_A3EXH0(265-374:468) Nucleoprotein n=5 Tax=Coronavirinae RepID=NCAP_BCHK9 E=5e-29 s/c=1.16 id=27% cov=95% -ANAKKLRHKRTAHKGSGVTVNYGRRGPgdlEGNFGDREMIKLGTDDPRFAAAAQMAPNVSSFLFMSHLSTRDEDDALWLHYKGAIKLPKDDPNYEQWTk ilaENLNAYKD------ >UniRef50_P59595(257-361:422) Nucleoprotein n=71 Tax=Betacoronavirus RepID=NCAP_CVHSA E=1e-25 s/c=1.11 id=33% cov=90% ----KKPRQKRTATKQYNVTQAFGRRGPeqtQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPqfkdNVI LLNKHIDAY-------- >UniRef50_B2BW44(223-309:379) Nucleocapsid protein n=1 Tax=Beluga Whale coronavirus SW1 RepID=B2BW44_9GAMC E=6e-24 s/c=1.28 id=31% cov=77% ---------KRTLPPNKPVDQVFGSRDTEKNFGDAEMIKKGMSDPRFTAALIPTPGPQAALFGSHVTLKEKPDGLEITYKYRTLFPKTDERYE------- ---------- >UniRef50_Q96605(230-323:409) Nucleoprotein n=300 Tax=Avian coronavirus RepID=NCAP_IBVV1 E=1e-19 s/c=1.04 id=20% cov=75% --------HKRAIAPGKRIDEVFGQRrkGQAPNFGDDKMIEEGVKDGRLTAMLNLVPTPHACLLGSMVTAKLQPDGLHVRFSFETVVKREDP-------- ------------ >UniRef50_Q07499(165-374:441) Nucleoprotein n=21 Tax=Porcine epidemic diarrhea virus RepID=NCAP_PEDV7 E=1e-24 s/c=0.44 id=45% cov=94% ERDLKDiPEWRRIPKGENSVAACFGPRGGFKNFGDAEFVEKGVDASGYAQIASLAPNVAALLFGGNVAVRELADSYEITYNYKMTVPKSDPNVELLVSQV DAF-------- >UniRef50_P05991(180-380:382) Nucleoprotein n=87 Tax=Coronavirinae RepID=NCAP_CVPFS E=5e-56 s/c=0.73 id=37% cov=100% PKNENKHTWKRTAGKG-DVTRFYGARSSSANFGDSDLVANGSSAKHYPQLAECVPSVSSILFGSYWTSKEDGDQIEVTFTHKYHLPKDDPKTEQFLQQIN AYARPSEVakeqrkRK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * 2920 * * * * 1290 * * * 1124 * * * * * * * 1 527 3351 2265 1000 1000 * * 2328 1000 0 S 2 1863 * * * * * 3209 * 2004 * * * * * 1972 3150 * * * * 2 144 3397 * 3459 138 974 1027 2516 1000 1383 Q 3 * * 2914 2436 * * * * * * * 1753 * 1374 * * * * * * 3 0 * * * * * 0 2574 0 1000 L 4 3005 * * 3176 * * * * * 1127 2123 * * * * * * 3691 * * 4 0 * * * * 0 * 2782 0 1000 K 5 * * 2007 * * * * * 1690 * * 2131 * 2230 * * * * * * 5 0 * * * * * * 3023 0 0 K 6 * * 3680 * * * * * 117 * * * * * * * * * * * 6 117 3680 * 0 * * * 3023 1000 0 P 7 * * * * * * 3468 * * 3555 3415 * 452 * * * * * * * 7 0 * * * * * * 3023 0 0 R 8 * * * 1889 * * * * * * * * * * 644 * 3468 * * * 8 0 * * * * * * 3023 0 0 W 9 * * * * * * 1928 * * * * * * 2331 * * * * 893 * 9 0 * * * * * * 3295 0 0 K 10 * * * * * * * * 146 * * * * * 3372 * * * * * 10 0 * * * * * * 3613 0 0 R 11 * * * * * * * * * * * * * * 0 * * * * * 11 0 * * * * * * 3613 0 0 V 12 3565 * * * * * * 4258 * * * * * 3483 * 4294 1116 1935 * * 12 0 * * * * * * 3613 0 0 P 13 1986 * * * * * * 3565 * 2404 * * 1077 * * * * * * * 13 0 * * * * * * 3613 0 0 T 14 3565 * * * * 3958 4204 * 4258 3960 * 1604 3004 * * 4497 2455 * * * 14 0 * * * * * * 3613 0 0 R 15 * * 4382 * * 3372 * * 801 * * * 2783 * 4364 3514 * * * * 15 0 * * * * * * 3613 0 0 E 16 * * 2903 2767 * 1305 * * * * * 4039 * 2639 * 3424 * * * * 16 172 4382 3958 1000 1000 * * 3613 1000 0 E 17 * 3244 * 2014 * * * * 1576 * * 4186 * * * 3120 * * * 2821 17 66 4493 * 1000 1000 0 * 3548 1000 1000 N 18 * * 2702 * * 4204 * * * * * 1879 3181 * 3565 2771 2482 * * * 18 0 * * * * * * 3613 0 0 V 19 * * * * * * * 2234 * * * * * * * * * 345 * * 19 0 * * * * * * 3613 0 0 I 20 4258 * 2783 4497 * * * 4364 * * * * * 3317 4440 2965 1468 3762 * * 20 0 * * * * * * 3613 0 0 Q 21 3291 * * 3565 * * * * 4440 * * * * 834 3958 * 4531 3343 * * 21 0 * * * * * * 3613 0 0 C 22 2901 1077 * * 3958 * * * * * * 4204 * * * * * 1871 * * 22 0 * * * * * * 3613 0 0 F 23 * * * * 182 * * * * * * * * * * * * * * 3076 23 110 3762 * 1585 585 * * 3613 1000 0 G 24 * * * * * 0 * * * * * * * * * * * * * * 24 0 * * * * * * 3613 0 0 P 25 3958 * * * * * * * 3317 * * 3970 1307 3565 2665 4039 3960 * * * 25 0 * * * * * * 3613 0 0 R 26 * * * * * 3762 * * * * * * * * 110 * * * * * 26 127 3565 * 1000 1000 * * 3613 1000 0 D 27 * * 1776 * * 1337 * * * * * * 3762 * * 2068 * * * * 27 96 3960 * 0 * * * 3613 1000 0 F 28 2703 * * * 3474 3372 * * * 3039 * * 2219 3565 3970 3958 4039 4324 * * 28 175 3128 * 1585 585 * * 3613 1455 0 N 29 3565 * 4382 2675 4258 3960 * * * * * 2747 * 2901 * 2296 3210 * * * 29 0 * * * * * * 3613 0 0 H 30 2959 * * * * 2488 2858 * 3144 * * * 3565 3317 2446 3762 * * * * 30 95 3970 * 0 * * * 3613 1000 0 N 31 * * * * * * * * * * * 0 * * * * * * * * 31 0 * * * * * * 3613 0 0 M 32 * * * * 280 * * * * * 4364 * * * * * * 2965 * * 32 0 * * * * * * 3613 0 0 G 33 * * * * * 0 * * * * * * * * * * * * * * 33 0 * * * * * * 3613 0 0 D 34 * * 766 * * 3317 * * * * * 4592 * * * 2182 4324 * * * 34 0 * * * * * * 3613 0 0 S 35 1790 * 3565 * * 3407 * * 4324 4592 3762 * 4340 4055 4204 2299 * * * * 35 0 * * * * * * 3613 0 0 D 36 * * 1526 1500 * 3353 * * 3565 * * * * 3762 * * 4531 * * * 36 0 * * * * * * 3613 0 0 L 37 * * * * 3372 * * * * 1679 1737 * * * * 3960 3970 3483 * 3762 37 0 * * * * * * 3613 0 0 V 38 * * * 2965 * * * 1945 * 2818 * 3762 * * * * * 1334 * * 38 0 * * * * * * 3613 0 0 Q 39 2012 * * 2870 * * * * 1261 * * * * 3402 3273 * * * * * 39 0 * * * * * * 3613 0 0 N 40 3960 * * 2493 * * * * 2667 2131 * 2305 * 4055 * * 3970 * * 4440 40 0 * * * * * * 3613 0 0 G 41 * * * * * 0 * * * * * * * * * * * * * * 41 0 * * * * * * 3613 0 0 V 42 * * * * * * * * * * 2404 * * * * 3958 1793 1126 * * 42 0 * * * * * * 3613 0 0 D 43 2965 * 2216 2231 * * * * 2524 * * 4497 * * * 2148 * * * * 43 0 * * * * * * 3613 0 0 A 44 1365 * 995 * * * * * * * * * * * * * * * * 3183 44 0 * * * * * * 3613 0 0 K 45 * * * * * 3565 * * 1507 * * * 1332 * * 2587 * * * * 45 0 * * * * * * 3613 0 0 G 46 * * * * * 2092 2181 * * * * * * 3317 1317 * * * * 4531 46 0 * * * * * * 3613 0 0 F 47 * * * * 1474 * * 2965 * 3565 * * * * * * * * 2901 1768 47 0 * * * * * * 3613 0 0 P 48 2729 * * * * * * * * * 2965 * 796 * * * 2783 * * * 48 0 * * * * * * 3613 0 0 Q 49 1925 * * * * * * 3317 * * * * * 927 * * 3180 * * * 49 0 * * * * * * 3613 0 0 L 50 2649 * * * 3483 * * 1826 * 1379 3565 * * * * * * * * * 50 0 * * * * * * 3613 0 0 A 51 227 * * * * * * * * 2783 * * * * * * * * * * 51 0 * * * * * * 3613 0 0 E 52 * * * 956 * * * 4039 * * * 3565 * 3128 2965 3372 * * * * 52 0 * * * * * * 3613 0 0 L 53 * 3958 * * 3007 * 3970 * * 661 4204 * 4039 * * * * * * * 53 0 * * * * * * 3613 0 0 I 54 1553 * * * * * * 4364 * 3381 * * * * * * 4039 1140 * * 54 0 * * * * * * 3613 0 0 P 55 * * * * * * * * * * * * 0 * * * * * * * 55 0 * * * * * * 3613 0 0 N 56 * * * * * 1855 * * * * * 2689 * * * 1798 1832 * * * 56 0 * * * * * * 3613 0 0 Q 57 1844 * * * * * * * * * * * 2783 2790 * * 2914 1742 * * 57 0 * * * * * * 3613 0 0 A 58 1420 * * * * 3317 3565 * * * * * * 2404 * 1986 * * * * 58 0 * * * * * * 3613 0 0 A 59 409 * * 2965 * * * * * * * * * * * 3076 * * * * 59 0 * * * * * * 3613 0 0 L 60 4039 3565 * * 1793 * * 3958 * 1520 2707 * * * * * * * * * 60 0 * * * * * * 3613 0 0 F 61 3381 * * * 2258 * * * * 687 3762 * * * * * * * * * 61 0 * * * * * * 3613 0 0 F 62 * * * * 355 4055 * * * 3565 * * * * * 3762 * * * * 62 0 * * * * * * 3613 0 0 D 63 2965 * 2464 * * 993 * * * * 3128 * * * * * 3762 * * * 63 0 * * * * * * 3613 0 0 S 64 * * * * * 2154 * * * * * * * * * 367 * * * * 64 0 * * * * * * 3613 0 0 E 65 * * * 2858 * * 1588 * 4340 * 3565 3372 * 3762 2634 * * * * 3958 65 0 * * * * * * 3613 0 0 V 66 * * * * 3762 * * 2066 * 1823 * * * * * * * 1555 3958 * 66 110 3762 * 2322 322 * * 3613 1000 0 S 67 3372 * 3242 2224 * 4055 * * * * * * * * * 2186 1967 4382 * * 67 153 3317 * 3326 152 * * 3613 1082 0 T 68 3565 * 3317 * * * * * * 4039 4055 3762 * * * 2057 1847 3291 * * 68 0 * * * * * * 3613 0 0 D 69 * * 3032 2639 * * * * 1051 * * 2965 * * 3231 * * * * * 69 96 3960 * 0 * * * 3613 1000 0 E 70 * * 3263 936 3970 * * * * 3565 * * 3317 3960 * * * 4055 * * 70 0 * * * * * * 3613 0 0 V 71 3485 * 3958 3385 4324 * * * 4039 4258 4497 3762 * 1924 * 4382 3191 4364 * * 71 0 * * * * * * 3613 0 0 G 72 2641 * 3076 * * 1453 * * 2734 * * * 2283 * * * * * * * 72 0 * * * * * * 3613 0 0 D 73 * * 628 3096 * 2965 * * * * * 4382 * * * 4055 * * * * 73 0 * * * * * * 3613 0 0 N 74 2455 * 4531 4324 4440 2001 * * * * * 4364 3762 3958 * 3415 4382 3317 * * 74 0 * * * * * * 3613 0 0 V 75 * * * * * * * 2964 * 1922 * * * * * * 4055 1339 * 2712 75 0 * * * * * * 3613 0 0 Q 76 * * * 1258 * * 3565 4531 * * * * * 4364 * * 2965 3483 3128 3762 76 110 3762 * 0 * * * 3613 1000 0 I 77 * * * * * * * 1741 * 983 * * * * * * * 2359 * * 77 0 * * * * * * 3613 0 0 T 78 * * * * * * 4204 * 4324 * * * * 4340 2884 3762 650 * * * 78 0 * * * * * * 3613 0 0 Y 79 * * * * 1416 * * * * * * * * * * * * * * 678 79 0 * * * * * * 3613 0 0 T 80 * * * * * * 2326 * 3119 * * 3276 * * * 1882 1686 * * * 80 0 * * * * * * 3613 0 0 Y 81 * * * * 3565 1793 3958 * * * * * * * * * 3483 * * 1079 81 0 * * * * * * 3613 0 0 K 82 1793 * * 3565 * * * * 1947 * * * * * 2369 2965 * 4440 * * 82 0 * * * * * * 3613 0 0 M 83 * * * * * * * 1721 * * 1522 * * * * * 2783 2849 * 3958 83 0 * * * * * * 3613 0 0 L 84 * * * * * * 3958 * 1874 2702 * 4324 * * 2772 * 2131 3565 * * 84 0 * * * * * * 3613 0 0 V 85 * * * * 2633 * * * * 1986 * * * * * * * 770 * * 85 0 * * * * * * 3613 0 0 A 86 4364 * 2094 * * * * * 2234 * * * 1125 * * 4440 * * * * 86 0 * * * * * * 3613 0 0 K 87 * * 4055 3970 * * * * 854 * * * 3762 3960 3565 3317 * * * * 87 0 * * * * * * 3613 0 0 D 88 * * 1453 2896 * 3970 * * 2901 * * * * * * 3388 2270 * * * 88 0 * * * * * * 3613 0 0 N 89 * * 971 * * * 3483 * * 3317 * 2538 * * * 2965 * * * * 89 0 * * * * * * 3613 0 0 K 90 * * * 4039 * * * * 2107 * * * 608 * * 4294 * * * * 90 98 3928 * 2000 415 * * 3613 1000 0 N 91 * * 2855 * * 3176 4287 * 3870 * * 831 * * 3851 * * * * * 91 0 * * * * * * 3485 0 0 L 92 * * * * 3176 * * * * 1518 * * * * * * 3870 2981 * 1534 92 0 * * * * * * 3485 0 0 P 93 * * 3850 1044 * 3398 * 3884 * * * 3680 3276 4191 * 4406 * * * * 93 0 * * * * * * 3485 0 0 K 94 * * * * * * * 4217 2069 2886 * * * 2846 1968 * 3058 4113 * * 94 0 * * * * * * 3403 0 0 F 95 * * * * 1164 * * 3058 * 1802 * * * * * * * * 2767 * 95 0 * * * * * * 3403 0 0 I 96 * * * * * * * 4153 2723 1358 2316 3796 * * * * 3917 3982 * * 96 192 3006 * 2000 415 * * 3403 1476 0 E 97 4217 * 2256 1262 * * * * 2902 * * * * 3025 * 3982 * * * * 97 0 * * * * * * 3403 0 0 Q 98 2723 * * 4195 * * 3796 3631 * * * 3006 * 1136 * * * 4016 * * 98 0 * * * * * * 3403 0 0 I 99 * * * * * * * 2314 * 944 * * * * * * * 1842 * * 99 0 * * * * * * 3403 0 0 S 100 4208 * 1610 * * * * * * * * 966 * * * 3234 * * * * 100 132 3516 * 3000 193 * * 3403 1000 0 A 101 0 * * * * * * * * * * * * * * * * * * * 101 0 * * * * * * 3209 0 0 F 102 * * * * 1927 * * * * * * * 3075 * * * * * * 693 102 0 * * * * * * 3096 0 0 T 103 2327 * * * * * * * 2146 3347 * * * * * 3571 1350 * * * 103 142 3419 * 2000 415 * * 2776 1000 0 K 104 * * 1649 * * * * * 1049 * * * * * 2338 * * * * * 104 152 * 3324 * * * * 2776 0 0 P 105 * * * * * * * * * * * * 161 * * 3246 * * * * 105 0 * * * * * 0 2566 0 1000 S 106 * * * * * * * * * * * * * 1655 * 551 * * * * 106 187 3040 * 0 * 0 * 2566 1000 1000 S 107 * * * 2171 * * * * 1756 * * * * 3438 3174 1842 * * * * 107 0 * * * * * * 2612 0 0 I 108 * * * 3174 * * * 2392 * 3382 3396 * * * * * * 978 * * 108 196 2976 * 2585 263 * * 2612 1000 0 K 109 * * 3382 3174 * * * * 1062 * * * * 3396 2189 * * * * * 109 0 * * * * * * 2612 0 0 E 110 * * * 2450 * 3382 * * 1250 * * * * 3396 2282 * * * * * 110 0 * * 0 * * * 2612 0 0 //