HHsearch 1.5 NAME c5ee2A_ FAM FILE c5ee2A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5ee2A_.a3m DATE Sat Nov 7 08:17:33 2015 LENG 122 match states, 122 columns in multiple alignment FILT 4 out of 8 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.6 EVD 0.4486 0.8697 SEQ >ss_dssp CCSSEEEEEEEEEEEETTEEEECCCCEEEEEETTTTEEEEEECCBTTTBSCEEEEEEEEETTEEEEEEEETTEEEEEEEEECCCEEEEEEECTTCGGGCE EEEEEEEEEETTCCCCCCCCCC >sa_dssp EEDABBAACADADAECEEEECEADEDACAAAABCCDCABBDACCDEEACDDACAEEBDAEDDDBDCEADBEEDEADADCDBEECCBCCDACAEEDEDBCB EBDBCBDCDDEECECEDCEDBE >ss_pred CCCCCEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECEEEEECCCCCCCE EECCCCCCCCCCCCCCCCCCCC >ss_conf 9776146899999970970861424246686413771335985177758602774335315311210145760115521276453050789726653010 0035334332376533210029 >Consensus xxkGKxTYeVWxxRVrngxfVtSsvlSxlTaNFNtnklxGxIxGNaDyGpdvxxxxxtingxxFSGtAxSgGksGxxeGkFfexsIGGKvTFdgdrSLDt VFGGvxxxxxxxxtxtxtxhlt >c5ee2A_ LSKGKITYQVWGIRVRNGQFVTSSVLSFITANFNSNTLAGKILGNSDYGPDVDIQNATITGPTFSGDATSGGKSGKLEGKFFEVSIGGKITFDGDRSLDT VFGGVSYEKKLDDTSQDTNHLT >UniRef50_A1KW50(194-340:341) Haemoglobin-haptoglobin-utilization protein n=19 Tax=Neisseria RepID=A1KW50_NEIMF E=1e-41 s/c=1.16 id=80% cov=99% --KGKITYQVWGIRVRNRQFVTSSytppksgsyygtlantpVLSFITANFNSNKLAGEIRGNSDYGPSVKIENATINSLSFSGTATSGGKTGNLEGKFFg kfngyrdtETSIGGKITFDGDRSLDTVFGGVSYKKELEnNTDTSTTHLT >UniRef50_C0DRU0(184-318:324) Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DRU0_EIKCO E=1e-20 s/c=0.74 id=50% cov=96% ---GKATYEVWAFRVKGGSVVASSyntdtnpakrVNSLLTVNFNTGKVGGTIKGNADFGADIDFNDVTVNGNTFSGTASSGGVSGQVNGGFYGKSgwydp agteIGGKVTFNGNRSLDSVFGGSATDTRRDPDTTATD--- >UniRef50_D0W2E7(185-326:330) Hemoglobin-haptoglobin-utilization protein n=4 Tax=Neisseria RepID=D0W2E7_NEICI E=6e-35 s/c=1.04 id=60% cov=98% VAKGKTTYEVWAVRVRNGNFVTSTYepknpykssektapkLSLLTANFNTNKLGGTILGNADYGPDVVMKDVGINGVDFSGTAESDGKNGKVEGKFFgqf dgdktEVNIGGKVTFDADKSLDTVFGGVKNDDDRNTTDTSLT--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * * * 1000 * * * * * * * 1000 * * 1 0 * * * * * * 1315 0 0 S 2 1000 * * * * * * * * * * * * * * 1000 * * * * 2 0 * * * * * * 1315 0 0 K 3 * * * * * * * * 0 * * * * * * * * * * * 3 0 * * * * * * 1377 0 0 G 4 * * * * * 0 * * * * * * * * * * * * * * 4 0 * * * * * * 1624 0 0 K 5 * * * * * * * * 0 * * * * * * * * * * * 5 0 * * * * * * 1624 0 0 I 6 1774 * * * * * * 1126 * * * * * * * * 2004 * * * 6 0 * * * * * * 1624 0 0 T 7 * * * * * * * * * * * * * * * * 0 * * * 7 0 * * * * * * 1624 0 0 Y 8 * * * * * * * * * * * * * * * * * * * 0 8 0 * * * * * * 1624 0 0 Q 9 * * * 885 * * * * * * * * * 1126 * * * * * * 9 0 * * * * * * 1624 0 0 V 10 * * * * * * * * * * * * * * * * * 0 * * 10 0 * * * * * * 1624 0 0 W 11 * * * * * * * * * * * * * * * * * * 0 * 11 0 * * * * * * 1624 0 0 G 12 885 * * * * 1126 * * * * * * * * * * * * * * 12 0 * * * * * * 1624 0 0 I 13 * * * * 1774 * * 1126 * * * * * * * * * 2004 * * 13 0 * * * * * * 1624 0 0 R 14 * * * * * * * * * * * * * * 0 * * * * * 14 0 * * * * * * 1624 0 0 V 15 * * * * * * * * * * * * * * * * * 0 * * 15 0 * * * * * * 1624 0 0 R 16 * * * * * * * * 1774 * * * * * 499 * * * * * 16 0 * * * * * * 1624 0 0 N 17 * * * * * 1774 * * * * * 499 * * * * * * * * 17 0 * * * * * * 1624 0 0 G 18 * * * * * 378 * * * * * * * * 2117 * * * * * 18 0 * * * * * * 1624 0 0 Q 19 * * * * * * * * * * * 2004 * 1126 * 1774 * * * * 19 0 * * * * * * 1624 0 0 F 20 * * * * 499 * * * * * * * * * * * * 1774 * * 20 0 * * * * * * 1624 0 0 V 21 * * * * * * * * * * * * * * * * * 0 * * 21 0 * * * * * * 1624 0 0 T 22 1774 * * * * * * * * * * * * * * * 499 * * * 22 0 * * * * * * 1624 0 0 S 23 * * * * * * * * * * * * * * * 0 * * * * 23 0 * * * * * * 1624 0 0 S 24 * * * * * * * * * * * * * * * 414 2004 * * * 24 1068 935 * 3716 114 * * 1624 1436 0 V 25 * * * * * * * * * * * * * * * * * 414 * 2004 25 414 2004 * 3907 100 * * 1624 1000 0 L 26 * * * * * * * * * 499 * 1774 * * * * * * * * 26 0 * * * * * * 1624 0 0 S 27 * * * * * * * * * * * * * * * 0 * * * * 27 0 * * * * * * 1624 0 0 F 28 * * * * 1126 * * * * 885 * * * * * * * * * * 28 0 * * * * * * 1624 0 0 I 29 * * * * * * * 1126 * 885 * * * * * * * * * * 29 0 * * * * * * 1624 0 0 T 30 * * * * * * * * * * * * * * * * 0 * * * 30 0 * * * * * * 1624 0 0 A 31 499 * * * * * * * * * * * * * * * * 1774 * * 31 0 * * * * * * 1624 0 0 N 32 * * * * * * * * * * * 0 * * * * * * * * 32 0 * * * * * * 1624 0 0 F 33 * * * * 0 * * * * * * * * * * * * * * * 33 0 * * * * * * 1624 0 0 N 34 * * * * * * * * * * * 0 * * * * * * * * 34 0 * * * * * * 1624 0 0 S 35 * * * * * * * * * * * * * * * 1126 885 * * * 35 0 * * * * * * 1624 0 0 N 36 * * * * * 1774 * * * * * 499 * * * * * * * * 36 0 * * * * * * 1624 0 0 T 37 * * * * * * * * 373 * * * * * * * 2135 * * * 37 0 * * * * * * 1624 0 0 L 38 * * * * * * * * * 499 * * * * * * * 1774 * * 38 0 * * * * * * 1624 0 0 A 39 1126 * * * * 885 * * * * * * * * * * * * * * 39 0 * * * * * * 1624 0 0 G 40 * * * * * 0 * * * * * * * * * * * * * * 40 0 * * * * * * 1624 0 0 K 41 * * * 2117 * * * * 2135 * * * * * * * 885 * * * 41 0 * * * * * * 1624 0 0 I 42 * * * * * * * 0 * * * * * * * * * * * * 42 0 * * * * * * 1624 0 0 L 43 * * * * * * * * 1774 1068 * * * * 2117 * * * * * 43 0 * * * * * * 1624 0 0 G 44 * * * * * 0 * * * * * * * * * * * * * * 44 0 * * * * * * 1624 0 0 N 45 * * * * * * * * * * * 0 * * * * * * * * 45 0 * * * * * * 1624 0 0 S 46 885 * * * * * * * * * * * * * * 1126 * * * * 46 0 * * * * * * 1624 0 0 D 47 * * 0 * * * * * * * * * * * * * * * * * 47 0 * * * * * * 1624 0 0 Y 48 * * * * 1774 * * * * * * * * * * * * * * 499 48 0 * * * * * * 1624 0 0 G 49 * * * * * 0 * * * * * * * * * * * * * * 49 0 * * * * * * 1624 0 0 P 50 1774 * * * * * * * * * * * 499 * * * * * * * 50 0 * * * * * * 1624 0 0 D 51 * * 378 * * * * * * * * * * * * 2117 * * * * 51 0 * * * * * * 1624 0 0 V 52 * * * * * * * 1774 * * * * * * * * * 499 * * 52 0 * * * * * * 1624 0 0 D 53 * * 943 * * * * * 2117 * * * * * * * * 2004 * * 53 0 * * * * * * 1624 0 0 I 54 * * * * 1774 * * 1126 * * 2004 * * * * * * * * * 54 0 * * * * * * 1624 0 0 Q 55 * * * 2117 * * * * 2004 * * 1774 * 2135 * * * * * * 55 0 * * * * * * 1624 0 0 N 56 * * 885 * * * * * * * * 1126 * * * * * * * * 56 0 * * * * * * 1624 0 0 A 57 1126 * * * * * * * * * * * * * * * * 885 * * 57 0 * * * * * * 1624 0 0 T 58 * * * * * 2004 * * * * * * * * * * 414 * * * 58 0 * * * * * * 1624 0 0 I 59 * * * * * * * 499 * * * * * * * * * 1774 * * 59 0 * * * * * * 1624 0 0 T 60 * * * * * * * * * * * 373 * * * * 2135 * * * 60 0 * * * * * * 1624 0 0 G 61 * * * * * 378 * * * * * * * * * 2117 * * * * 61 0 * * * * * * 1624 0 0 P 62 * * * * * * * * * 2117 * 1774 2135 * * * * 2004 * * 62 0 * * * * * * 1624 0 0 T 63 * * 2004 * * * * * * * * * * * * 2117 943 * * * 63 0 * * * * * * 1624 0 0 F 64 * * * * 0 * * * * * * * * * * * * * * * 64 0 * * * * * * 1624 0 0 S 65 * * * * * * * * * * * * * * * 0 * * * * 65 0 * * * * * * 1624 0 0 G 66 * * * * * 0 * * * * * * * * * * * * * * 66 0 * * * * * * 1624 0 0 D 67 * * 2135 * * * * * * * * * * * * * 373 * * * 67 0 * * * * * * 1624 0 0 A 68 0 * * * * * * * * * * * * * * * * * * * 68 0 * * * * * * 1624 0 0 T 69 * * * 2004 * * * * * * * * * * * 1774 1126 * * * 69 0 * * * * * * 1624 0 0 S 70 * * * * * * * * * * * * * * * 0 * * * * 70 0 * * * * * * 1624 0 0 G 71 * * 2004 * * 414 * * * * * * * * * * * * * * 71 0 * * * * * * 1624 0 0 G 72 * * * * * 0 * * * * * * * * * * * * * * 72 0 * * * * * * 1624 0 0 K 73 * * * * * * * * 499 * * * * * * * * 1774 * * 73 0 * * * * * * 1624 0 0 S 74 * * * * * * * * * * * 2004 * * * 943 2117 * * * 74 0 * * * * * * 1624 0 0 G 75 * * * * * 0 * * * * * * * * * * * * * * 75 0 * * * * * * 1624 0 0 K 76 * * * * * * * * 1068 * * 2117 * 1774 * * * * * * 76 0 * * * * * * 1624 0 0 L 77 * * * * * * * * * 1126 * * * * * * * 885 * * 77 0 * * * * * * 1624 0 0 E 78 * * * 499 * * * * * * * 1774 * * * * * * * * 78 0 * * * * * * 1624 0 0 G 79 * * * * * 0 * * * * * * * * * * * * * * 79 0 * * * * * * 1624 0 0 K 80 * * * * * 1774 * * 499 * * * * * * * * * * * 80 0 * * * * * * 1624 0 0 F 81 * * * * 0 * * * * * * * * * * * * * * * 81 0 * * * * * * 1624 0 0 F 82 * * * * 499 * * * * * * * * * * * * * * 1774 82 943 1059 * 3085 181 * * 1624 1298 0 E 83 * * * 499 * 1774 * * * * * * * * * * * * * * 83 0 * * * * * * 1624 0 0 V 84 * * * * * * * * 1774 * * * * * * * 2117 1068 * * 84 0 * * * * * * 1624 0 0 S 85 * * * * * * * * * * * 2004 * * * 414 * * * * 85 499 1774 * 3170 170 * * 1624 1000 0 I 86 * * * * * * * 0 * * * * * * * * * * * * 86 0 * * * * * * 1624 0 0 G 87 * * * * * 0 * * * * * * * * * * * * * * 87 0 * * * * * * 1624 0 0 G 88 * * * * * 0 * * * * * * * * * * * * * * 88 0 * * * * * * 1624 0 0 K 89 * * * * * * * * 0 * * * * * * * * * * * 89 0 * * * * * * 1624 0 0 I 90 * * * * * * * 1126 * * * * * * * * * 885 * * 90 0 * * * * * * 1624 0 0 T 91 * * * * * * * * * * * * * * * * 0 * * * 91 0 * * * * * * 1624 0 0 F 92 * * * * 0 * * * * * * * * * * * * * * * 92 0 * * * * * * 1624 0 0 D 93 * * 499 * * * * * * * * 1774 * * * * * * * * 93 0 * * * * * * 1624 0 0 G 94 2004 * * * * 414 * * * * * * * * * * * * * * 94 0 * * * * * * 1624 0 0 D 95 * * 499 * * * * * * * * 1774 * * * * * * * * 95 0 * * * * * * 1624 0 0 R 96 * * * * * * * * 2004 * * * * * 414 * * * * * 96 0 * * * * * * 1624 0 0 S 97 * * * * * * * * * * * * * * * 0 * * * * 97 0 * * * * * * 1624 0 0 L 98 * * * * * * * * * 0 * * * * * * * * * * 98 0 * * * * * * 1624 0 0 D 99 * * 0 * * * * * * * * * * * * * * * * * 99 0 * * * * * * 1624 0 0 T 100 * * * * * * * * * * * * * * * 1774 499 * * * 100 0 * * * * * * 1624 0 0 V 101 * * * * * * * * * * * * * * * * * 0 * * 101 0 * * * * * * 1624 0 0 F 102 * * * * 0 * * * * * * * * * * * * * * * 102 0 * * * * * * 1624 0 0 G 103 * * * * * 0 * * * * * * * * * * * * * * 103 0 * * * * * * 1624 0 0 G 104 * * * * * 0 * * * * * * * * * * * * * * 104 0 * * * * * * 1624 0 0 V 105 * * * * * * * * * * * * * * * 1774 * 499 * * 105 0 * * * * * * 1624 0 0 S 106 1774 * * * * * * * 2004 * * * * * * 1126 * * * * 106 0 * * * * * * 1624 0 0 Y 107 * * * * * * * * * * * 2004 * * * * 1774 * * 1126 107 0 * * * * * * 1624 0 0 E 108 * * 885 2135 * * * * 2117 * * * * * * * * * * * 108 0 * * * * * * 1624 0 0 K 109 * * 2004 * * * * * 1126 * * * * * * * 1774 * * * 109 0 * * * * * * 1624 0 0 K 110 * * 2004 2117 * * * * 2135 * * * * * 1774 * * * * * 110 0 * * * * * * 1624 0 0 L 111 * * * * * * * * * 1126 * * * * 885 * * * * * 111 0 * * * * * * 1624 0 0 D 112 * * 943 2117 * * * * * * * 2004 * * * * * * * * 112 378 2117 * 0 * * * 1624 1000 0 D 113 * * 2135 * * * * * * * * 2117 1774 * * * 2004 * * * 113 0 * * * * * * 1624 0 0 T 114 * * 1774 * * * * * * * * * * * * * 499 * * * 114 0 * * * * * * 1624 0 0 S 115 * * 1059 * * * * * * * * * * * * 2135 1774 * * * 115 0 * * * * * * 1624 0 0 Q 116 * * * * * * * * * * * * * 2135 * * 373 * * * 116 0 * * * * * * 1624 0 0 D 117 1774 * 2135 * * * * * * * * * * * * 1059 * * * * 117 0 * * * * * * 1624 0 0 T 118 * * * * * * * * * 2004 * * * * * * 414 * * * 118 0 * * * * * * 1624 0 0 N 119 * * 1774 * * * * * * * * 2135 * * * * 1059 * * * 119 0 * * * * * * 1624 0 0 H 120 * * * * * * 0 * * * * * * * * * * * * * 120 0 * * * * * * 1142 0 0 L 121 * * * * * * * * * 0 * * * * * * * * * * 121 0 * * * * * * 1142 0 0 T 122 * * * * * * * * * * * * * * * * 0 * * * 122 0 * * 0 * * * 1142 0 0 //