HHsearch 1.5 NAME c5d4pA_ FAM FILE c5d4pA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5d4pA_.a3m DATE Thu Feb 9 11:02:44 2017 LENG 102 match states, 102 columns in multiple alignment FILT 114 out of 212 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.6 EVD 0.4279 0.6602 SEQ >ss_dssp CCCCEEEEEEEEEEEGGGHHHHHHHHHHHTCCCCEEECSCCEECSSCEECCCCCCCSEEEEEEEECHHHHHHHHHHHHHHHHHSCCEEEEEEEEESCGGG CC >sa_dssp EDEDDEBCCACACACCECDCDABECADDDEBDDDEDDCECECEDEDDECDDCEEEDEBACACACABEECCDDADECAEDBCEEDDDDCDDDECECEECEE CE >ss_pred CCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCC CC >ss_conf 9742220599999669999999999984897716767472686204640133245784899998388999999999999975489199999858971242 09 >Consensus xxxlxxmKxixiiixxxxxxxixxxLxxxGvxGxTVxxxvxGxGxxgxxxxxxxxxxxvxievVxxxExxxxilxxixxxxxxxxGxixvsDVxViRxxx Fx >c5d4pA_ AIKLYPLKKLEIILEGAHKEFATDLLDRAGVKGYTIVGNLSGKGSHGMYEGHLMDDALIMIIAAVPEELVGPLLEGFQPFFEAHSGVVFVHDIQVGRPIK FR >UniRef50_P73954(4-104:110) Membrane-associated protein slr1513 n=21 Tax=Cyanobacteria RepID=Y1513_SYNY3 E=1e-05 s/c=0.51 id=24% cov=94% -----PANKLVIVTEKILLKKIAKIIDESGAKGYTVM-NTGGKGSRnvrssGQPNTSDIEANIKFEILTETREMAEEIADRVAvKYFNDYAGIIYICSAE VLYGHTF- >UniRef50_C6MFL5(11-100:105) Nitrogen regulatory protein P-II n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MFL5_9PROT E=7e-16 s/c=0.94 id=22% cov=87% ------MKRIEIVIHEERLDDLIQLFHEAEVYGYTLIKKAGGFGSTGERDQDdfILEQYNAVLVLVCDKNQADKLLAVLQPKIKDFGGMCLISDCQ---- ---- >UniRef50_A3ZX08(6-106:109) Putative uncharacterized protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZX08_9PLAN E=9e-13 s/c=0.74 id=21% cov=93% -------RRVTIVMDAALKGFMLEKLSELGVRSYSFM-NCHGQGHHAVTGDLYNGDDLLRLEIVTTTEIGAKILDWIHAAqfaqLSQYALFAYADHVEVd ERDQSFR >UniRef50_C3J9X9(1-97:100) Putative uncharacterized protein n=3 Tax=Bacteria RepID=C3J9X9_9PORP E=2e-06 s/c=0.55 id=25% cov=87% ---MNPDKIIFISFNQALHGLVIRLLERHNLRGYTQWDEIRGVGsrggepHQGSHAWPTLNGA---LLVACPGAVVPTILEELHALDESqplQGLRAFVW NVE-------- >UniRef50_B2IV65(1-98:103) Nitrogen regulatory protein P-II n=2 Tax=Cyanobacteria RepID=B2IV65_NOSP7 E=2e-19 s/c=0.99 id=24% cov=96% ---MHVVKKIEIIANSFELAKILESLDKSGVHSHAVIRNVVGKGLRGTTEDlDMTMLDNVYILAFCMPEELKRVVENIRPVLNKFGGTCYVSDVMEIRSV R-- >UniRef50_A6SV01(1-97:107) Nitrogen regulatory protein PII n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SV01_JANMA E=8e-10 s/c=0.67 id=17% cov=74% ------MKEIKAIIRPVRLDDVREALGQVaGFPGMTIthVEGCSSPARHQPHdfkEELLDYSPKVRIDIVIDDQYAKAVYDTIKRV-------------- -------- >UniRef50_B0MAI1(3-109:120) Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MAI1_9FIRM E=4e-09 s/c=0.59 id=22% cov=95% GMSMKAMKRLDIIIRPEKLEKLKEILEKKDYSGMTVF-TAMGCGYQEGFipefeemNFEINLLPKVVVMVVVWEEDVEDLLGAIHEELATgqvGDGRVFI SPVdDVMR----- >UniRef50_C7LV45(2-105:417) CBS domain containing protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LV45_DESBD E=0.0003 s/c=0.45 id=21% cov=92% -VKLIDVKILKIFVSEAvrhkgapLYDVIVNEARRRGMAGASVSRGVMGFGAsnllHTAKILRLAEDLPVIVEIVDTPSRIADFLPVVDALVEE--GSIV VQDGQAI------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 1626 * * * * 565 * * * * * * * * * * * * * * 1 0 * * * * * * 2082 0 0 I 2 * * * * * * * 1932 * * 708 * * * * * * 2990 * * 2 0 * * * * * * 3874 0 0 K 3 * * * 3872 * * * * 1309 * * 2887 * 3607 3935 2026 * * * * 3 0 * * * * * * 4283 0 0 L 4 * * * * * * * * * 670 1919 * * * * * 3226 * * * 4 0 * * * * * * 4993 0 0 Y 5 * * * 4387 2509 * 1984 3985 4266 * * 4138 * 3550 * * 2460 * * 3563 5 0 * * * * * * 5336 0 0 P 6 3516 * 3405 4847 * 4169 * * 3644 * * 4659 1427 * 3715 * 3165 4359 * * 6 0 * * * * * * 5525 0 0 L 7 4189 6087 5122 * * * * 5764 4236 3613 715 * * * 6131 * * 3002 * * 7 0 * * * * * * 5896 0 0 K 8 5632 * * * 6533 5258 * * 229 * * 6450 * * 4716 * 5209 6216 * * 8 0 * * * * * * 6039 0 0 K 9 * * * 2846 * * * 4806 1416 3112 3488 6061 * 4545 2534 6047 * * * * 9 0 * * * * * * 6019 0 0 L 10 * 5779 * * 6044 * * 1227 * 2325 5734 * * * * * * 1639 * * 10 0 * * * * * * 6019 0 0 E 11 5287 * 4111 1534 4855 * * 4711 3327 6057 * 6047 * 6246 4207 4506 2806 3130 * * 11 0 * * * * * * 6019 0 0 I 12 1586 5917 5536 * * * * 1060 * 4455 * * * * * * 6145 3482 * * 12 0 * * * * * * 6226 0 0 I 13 * * * * 3418 * * 894 * 4777 * * * * * 5685 3995 2282 * 4506 13 0 * * * * * * 6231 0 0 L 14 3968 4833 * * 4159 5744 * 1443 * 5365 6104 * * * * 5972 2975 1930 * 6130 14 21 6089 * 2807 222 * * 6231 1000 0 E 15 6380 * 3448 1966 * 4770 5308 * 3161 * * 3851 * 6353 1786 3394 * * * * 15 0 * * * * * * 6252 0 0 G 16 2297 * 6701 3805 * 4034 5439 5069 4246 5986 6519 * 1679 4132 4076 4322 4779 7176 * * 16 0 * * * * * * 6252 0 0 A 17 2420 * 4361 2558 3364 * 5928 4713 5824 4487 5808 4412 3863 5697 6304 3587 4833 3899 6014 6110 17 22 6044 * 2807 222 * * 6252 1000 0 H 18 4344 * 6724 4586 5219 * 4188 5146 1776 2276 4699 5814 * 6045 3099 5009 * 6273 * 4081 18 0 * * * * * * 6252 0 0 K 19 3703 * 5539 3023 4372 * 4900 4706 5440 1492 * * * 3645 5871 6646 * 3317 * 3784 19 0 * * * * * * 6252 0 0 E 20 5933 * 2293 1628 * 3756 4780 * 3650 * * 4911 3613 3864 5520 4389 6283 * * * 20 0 * * * * * * 6438 0 0 F 21 2964 * 3496 2969 4648 * 6574 5389 2937 4268 6558 4666 5006 4827 2434 4671 5857 4961 * 6860 21 0 * * * * * * 6438 0 0 A 22 4839 * * * * * * 1989 * 1817 4060 * * * * * 4910 1573 * * 22 0 * * * * * * 6312 0 0 T 23 4884 7068 * 5570 6398 * 5543 2201 2961 2578 6282 6742 * 5035 3320 4976 3667 2971 * * 23 0 * * * * * * 6312 0 0 D 24 4128 * 2567 1938 * 6920 6674 * 3245 5710 * 5387 * 3411 3367 3657 4699 5427 * 6103 24 0 * * * * * * 6312 0 0 L 25 1769 * 5716 3893 6022 4671 6787 3263 4612 2637 5737 * * 6103 3328 4072 4923 5296 * * 25 0 * * * * * * 6312 0 0 L 26 3956 * * * 3910 * * 3550 * 511 4332 * * * * * * 4954 * * 26 0 * * * * * * 6308 0 0 D 27 3390 * 3162 2846 * 5010 3902 5153 3263 4220 5236 4639 * 5984 2195 4448 6843 6100 * * 27 0 * * * * * * 6308 0 0 R 28 3506 * 4097 2310 * 6115 6018 * 2209 5283 * 5908 * 3392 2697 3743 5269 6224 * * 28 0 * * * * * * 6833 0 0 A 29 2807 4319 * 4429 6683 6564 5391 2699 6121 2458 3879 4224 * 5740 4897 3753 * 3492 * 5093 29 91 4036 * 0 * * * 6833 1983 0 G 30 * * 5146 3883 * 548 * * 4945 * * 3400 4999 5503 5476 5899 * * * * 30 42 5123 * 0 * * * 6693 1729 0 V 31 2649 5613 * * 3076 5802 * 2301 * 3284 5408 * * * * * * 1546 * 6383 31 0 * * * * * * 7103 0 0 K 32 3219 * 5366 6160 * 6475 3919 * 3413 5298 * 5525 2404 5869 3087 2831 2733 6650 * 6468 32 0 * * * * * * 7103 0 0 G 33 5668 6362 5792 * 6208 227 * * * * * * * * 7886 3682 * * * * 33 0 * * * * * * 7126 0 0 Y 34 2742 5749 * * 3075 5212 6331 4620 * 3963 2763 * * * * * * 3609 5197 1678 34 31 * 5555 * * * * 7126 0 0 T 35 5018 * * * * * * * * * * 5347 * * * 3741 201 * * * 35 4 * 8415 * * 0 * 7079 0 1454 I 36 5656 6292 * * 5416 * * 2425 5546 3409 5326 * * 6342 * 5240 6638 907 * 4828 36 286 5967 2611 1000 1000 0 * 7126 1000 1000 V 37 5074 * * * 2618 * 6237 2793 * 2640 3597 * * 5652 * 4233 3599 3140 4506 3415 37 263 5589 2775 2585 263 0 * 6983 1000 4642 G 38 6588 * 5244 2773 * 4091 4779 * 3782 * * 5434 2909 4387 2035 2408 6298 * * * 38 223 * 2803 * * 0 * 6979 0 3970 N 39 4031 6704 2795 4055 * 1869 4954 6274 4431 * * 2271 * * 5448 6063 3526 5163 * * 39 24 5895 * 2322 322 0 * 7115 1000 4320 L 40 2921 4335 * * 5021 * * 2522 * 4515 5328 * 6671 * 5195 5733 3781 1265 * * 40 0 * * * * * * 7126 0 0 S 41 4550 6954 6638 3543 5709 3825 5858 4990 3472 * 3247 6792 * 3971 3042 2439 3688 5544 6291 5096 41 11 7056 * 1585 585 * * 7126 1000 0 G 42 6016 * * * * 82 * * * * * * * 5928 * 5428 * * * * 42 25 5841 * 2000 415 * * 7126 1512 0 K 43 4750 3468 * 4212 2509 * 5631 * 2712 7045 7036 6638 5992 3833 3198 4449 * 4674 6533 2696 43 15 6614 * 3000 193 * * 7126 1000 0 G 44 5270 * * * * 78 * * * * * * * * * 6221 6263 * * * 44 101 3886 * 2187 358 * * 7126 3039 0 S 45 2448 * 4357 4757 * 6562 2314 5743 3658 4468 * 5401 6270 6980 3127 2794 5246 5342 6640 6380 45 155 3291 * 2070 392 * * 7140 3324 0 H 46 5603 * 6446 4171 6596 4768 1848 * 6611 6497 * 4607 * 2548 2273 3703 4486 * * 5275 46 216 3040 5864 2254 339 * * 7133 4247 0 G 47 5996 * * 5077 * 1020 4827 * 2949 * * 5711 6006 3420 4147 3849 4540 * * * 47 101 3888 * 2150 368 0 * 7191 3463 1432 M 48 5093 * 4340 4108 5283 3507 6917 3519 4211 3856 3911 6053 5292 4458 4930 3342 4413 2320 * * 48 37 5285 * 2433 296 * * 7196 2299 0 Y 49 4150 * 4851 7145 4819 * 2646 * 2950 4145 5759 * 5473 * 2340 5279 4621 4426 3633 3493 49 89 4057 * 1878 458 * * 7196 3175 0 E 50 4040 5279 3309 2237 6160 4095 5012 3994 6648 4562 6553 3713 4691 * 3727 4623 3289 5450 * 6053 50 16 6474 * 2000 415 * * 7196 1000 0 G 51 4802 * 3362 3167 3831 2329 6505 5781 6309 3407 * 7141 5769 4793 3859 3294 3970 * 4904 5603 51 74 4325 * 1664 547 * * 7196 2921 0 H 52 6819 6503 2151 3036 * 3849 5339 * 4685 3287 * 4995 4343 5124 3444 3284 * 3742 * 5712 52 154 3459 6637 1853 468 * * 7190 3926 0 L 53 6726 6489 3772 5736 4272 3837 * 2806 * 2258 4786 * * * * 4987 3045 2757 4032 6001 53 69 4770 6650 1638 559 0 * 7183 2684 1000 M 54 5720 * 2157 3405 4630 5977 6734 5440 4678 2681 4312 4329 * 6401 4246 3349 4179 4310 6602 * 54 74 4331 * 2069 393 0 * 7179 2960 1000 D 55 3894 5369 3776 2974 2184 4078 6864 5656 7196 3217 4714 5437 5893 5651 4963 4797 3899 6903 * 4479 55 42 5130 * 2479 285 * * 7190 2145 0 D 56 6198 * 2635 4511 6807 3123 4185 4169 5018 2759 * 3342 * 6466 * 2736 3959 4492 * * 56 118 3669 * 1280 766 * * 7190 3664 0 A 57 3191 * 3975 3798 * 3530 * 5883 4283 3184 * 4631 2553 4187 6864 2734 4202 * * 6466 57 133 4448 4557 2163 365 * * 7190 2900 0 L 58 * * * * * * 5709 6181 1929 3986 3846 2480 2448 5065 3810 5416 6488 4527 * 5044 58 96 4122 7114 1504 627 1670 544 7137 3051 2096 I 59 4368 * * 6478 * 6841 * 2465 5430 3352 6452 * * * 4715 5086 4323 1078 * 5223 59 0 * * * * 1601 577 7145 0 2185 M 60 5886 * * 6873 5310 * 6247 3158 2494 4424 2509 * * 5654 2431 5509 7040 2936 * 4086 60 29 5651 * 1557 599 0 * 7142 1683 1690 I 61 * * * 5465 5114 * * 1556 * 1979 4381 * * * * 6819 6472 1803 * * 61 0 * * * * * * 7190 0 0 I 62 * 6271 4267 1197 5615 * * 3244 6549 3506 4289 * * 5454 6431 * 3297 3524 * * 62 10 7172 * 0 * * * 7190 1000 0 A 63 3519 3456 * * 5573 * * 2261 * 3732 4882 * * * * 3819 3226 1760 6658 * 63 0 * * * * * * 7190 0 0 A 64 4802 5278 * * 4629 * * 1730 * 4015 * * * * * * 4889 1025 * 6681 64 0 * * * * * * 7190 0 0 V 65 3071 2497 2415 5064 * 5447 7007 4484 * 4584 5076 6172 * * * 5971 3983 2020 * * 65 13 6760 * 0 * * * 7190 1000 0 P 66 3585 * 2767 2942 * 5898 6782 6799 4197 * 5486 5578 3431 5516 4720 2378 2881 6154 6345 * 66 0 * * * * * * 7190 0 0 E 67 3636 * 1785 1852 * 6367 * 6746 4631 5718 * 5280 3345 4112 4810 5174 5254 * * * 67 16 * 6472 * * * * 7190 0 0 E 68 3770 * 2879 710 * 6674 * 5560 6598 * * 5497 6798 5200 6389 4709 6639 5667 * * 68 0 * * * * * 0 7181 0 1000 L 69 4399 7156 5083 4710 6151 * 5321 4305 2524 3807 4607 3998 5560 3039 2915 7006 4537 3394 * 5811 69 0 * * * * 0 * 7181 0 1000 V 70 1748 6329 * 5222 * 6007 * 2485 * 2278 6515 * * * * 5450 * 2197 * 6536 70 13 * 6821 * * * * 7190 0 0 G 71 3265 * 2354 1669 * 5049 * * 4112 5509 6022 3811 6362 4008 4304 5060 4863 * * * 71 0 * * * * * 0 7195 0 1000 P 72 2922 * 3333 3491 7132 6422 6691 * 2115 6072 * 5581 4096 4748 2849 4169 3719 5733 * * 72 0 * * * * 0 * 7195 0 1000 L 73 4324 6307 * * 4064 * * 1732 * 2034 6280 * * * * * 4907 1804 * * 73 0 * * * * * * 7190 0 0 L 74 3470 * * * 4091 * * 2606 * 1362 5217 * * * 5278 * 6356 2217 * 5816 74 0 * * * * * * 7190 0 0 E 75 3622 * 2341 1805 * 5145 6755 * 5913 4451 * 4737 2854 5078 4343 5026 4588 6876 * * 75 24 5941 * 0 * * * 7209 1000 0 G 76 2300 5905 4392 2854 5591 4243 4393 4134 3747 5620 * 4481 * 4518 4099 5775 3676 4649 5969 5492 76 0 * * * * * * 7238 0 0 F 77 4086 * * * 5530 * * 1363 * 1649 5257 * * * 5905 * * 2565 * * 77 96 3952 * 0 * * * 7238 2584 0 Q 78 4868 * 4065 2874 4799 6743 3382 4853 2754 4333 * 6370 * 3128 2633 5843 4542 5206 6408 6782 78 52 4817 * 0 * * * 7116 1995 0 P 79 2904 * 3994 1768 * 5144 * * 3239 6409 * 5125 2682 4729 3555 6730 4399 * * * 79 34 6260 6639 0 * * * 7075 1000 0 F 80 2966 * 6209 4760 4163 8105 * 4388 6225 2562 3232 4878 * 5301 4623 * 5253 2510 * 3018 80 92 4965 5077 1849 469 * 0 7066 1626 1000 F 81 3031 6094 5950 * 2714 * * 3949 * 1580 3993 6315 * * 6303 * 6149 2677 * 4769 81 142 3414 * 1338 726 * 0 7026 3621 2061 E 82 3306 * 5062 2204 * 6453 4028 * 2965 * * 3651 3510 3618 5376 3266 4957 * * 4572 82 126 4697 4464 1122 887 0 * 7027 2303 2061 A 83 6594 * 3524 3842 * 5482 3041 6304 2836 * * 3691 5572 3737 3837 4503 2433 * * 3973 83 443 2550 3416 1528 614 * 0 6925 4161 2314 H 84 5863 * 5751 * 2949 1885 3484 5825 * 5054 * 3215 * 4417 6313 * * 6071 * 2029 84 61 5150 6275 1585 585 1667 546 6848 1530 3374 S 85 2502 * 1821 * * 2022 * 3827 * * 6190 6265 4384 6125 * 3156 5464 * * * 85 17 6393 * 0 * 0 * 6905 1000 3059 G 86 * * * * 6354 380 * 4577 * 3192 4862 * * * * * 6244 5626 * * 86 0 * * * * * * 6924 0 0 V 87 5397 * * * 4172 * * 2417 2638 2505 4834 * * 6717 4553 5404 4993 1974 * * 87 0 * * * * * * 6924 0 0 V 88 2871 3187 * * 5985 * * 1492 * 3474 4508 * * * * * 5205 2268 * 6199 88 0 * * * * * * 6924 0 0 F 89 4583 * * * 1647 * 6509 4668 * 4790 6830 * * * * 5320 3239 3334 4132 1963 89 0 * * * * * * 6924 0 0 V 90 3823 * * * 6241 * * 2096 * 2911 4222 * * * * * 5031 1104 * * 90 17 * 6420 * * * * 6909 0 0 H 91 4355 4585 4612 3570 * 6247 4927 * 6215 5760 6410 6406 * 4133 * 1357 2798 5369 5092 4712 91 0 * * * * 0 * 6891 0 1000 D 92 * * 642 4027 * * 5768 * 4841 * * 4021 3379 6209 5232 4909 6218 * * * 92 19 6294 * 0 * * * 6878 1000 0 I 93 4244 4055 * * * 6284 * 2998 * 6278 * * * * * * 6267 468 * * 93 102 3867 * 0 * * * 6850 2170 0 Q 94 4486 * 2691 1540 * 4975 6158 * 6324 6717 5549 4660 * 2656 3839 4215 * * 5088 5960 94 0 * * * * * * 6754 0 0 V 95 4691 * * 5026 * * * 3580 * * 4949 * * * * * * 296 * * 95 45 5022 * 0 * * * 6235 1000 0 G 96 4867 * * 5038 * 5652 * 1851 * 2076 5422 * * * 5122 4730 * 1782 * 5617 96 0 * * * * * * 6220 0 0 R 97 5467 * 4178 * * * * * 3254 * * 4517 * * 426 * * * * 5094 97 0 * * * * * * 6053 0 0 P 98 4284 * 3353 * * 2436 * 4592 5086 * 5221 * 1734 5196 * 4599 3517 3575 * 5171 98 51 4845 * 2000 415 * * 5700 1000 0 I 99 3644 * 2325 1251 * 4800 3415 5107 * * * * * 4532 * * 4203 4502 * * 99 0 * * * * * * 5593 0 0 K 100 * * * * * * 3572 * 1506 * * * * * 1459 4532 3867 * * 3500 100 0 * * * * * * 5593 0 0 F 101 * * * * 113 * * * * * * * * * * * * * * 3733 101 0 * * * * * * 5242 0 0 R 102 * * * 1333 * * * * 2432 * * * * * 1260 * * * * * 102 0 * * 0 * * * 3060 0 0 //