HHsearch 1.5 NAME c5b88A_ FAM FILE c5b88A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5b88A_.a3m DATE Sat Jun 3 08:19:14 2017 LENG 85 match states, 85 columns in multiple alignment FILT 103 out of 160 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.8 EVD 0.4612 2.0478 SEQ >ss_dssp CCSSCCCCCEEESCCTTTTCCHHHHHHHHHHHSSCCTTTSCCCCCCSSCEEECCCCSCCCSHHHHTTSCCCTTTTSSCEECSCCC >sa_dssp EDEEDCDCCCDBDBAEEEDAEEEDABDCBCEEDEBCEEDBCECDCEDDCABBCCBDBEDCDDEEEDEEECECCBBDDCEEECEDE >ss_pred CCCCCCEEEEEEECCHHCCCCHHHHHHHHHHCCCCCHHHEEEEEEECCEEEEEECCHHHHHHHHHHHCCEECCCEEEEEECCCCC >ss_conf 9977763799994501079989999999973129998770015861880389813020799999973073357068999715789 >Consensus xadxgdmxrxxixxGkxdxixpxxivxxixxxxgixxxxIGxIxIxxxxSxveVpxxxaxxvlxxlxxxxixGkxlxiexaxxax >c5b88A_ MADVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQ >UniRef50_A1JLM2(384-460:460) ATP-dependent RNA helicase n=32 Tax=Enterobacteriaceae RepID=A1JLM2_YERE8 E=2e-09 s/c=0.83 id=24% cov=92% -----EMVTLCIDGGRKAKIRPSDILGALTGEAGLTAADVGKIDMFPVHAYVAIRKASAKRALQQLQQGKIKGKNCKARLLK--- >UniRef50_Q0ST49(445-525:528) ATP-dependent RNA helicase, DEAD/DEAH box family n=23 Tax=cellular organisms RepID=Q0ST49_CLOPS E=1e-14 s/c=1.00 id=17% cov=96% -APVMDETRLFMSVGRRDGITPKSLVNFLKETARISPKQVGDIDIKENFCFANVDADAVNNIMKKSMGKKLNKRTVNIEVAK--- >UniRef50_C8PT03(97-175:199) DbpA RNA binding domain protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PT03_9SPIO E=1e-11 s/c=0.90 id=17% cov=81% -----------MSIGRSRRVFPRDIITLLIQNADVSRERIGDIRILDNYSFVQVMNEDADKIIEKLNDFPYRGKNLSVS------ >UniRef50_A9NFC3(471-544:547) DEAD box ATP-dependent RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFC3_ACHLI E=9e-05 s/c=0.65 id=23% cov=62% ----GQYVDFTLNIGKADGLTPPTLFKFMEKEYGIFSKNIGDIRHHKNETVFGLRK----------------------------- >UniRef50_Q4PNH7(443-525:659) Putative cold-shock dead-box protein A n=1 Tax=uncultured marine bacterium 66A03 RepID=Q4PNH7_9BACT E=3e-11 s/c=0.84 id=20% cov=99% -ADFSNSSWFELSVGYRDNAEPRWLVAMLCRVGNMDKSLIGDIQIHNSLTFVEIASNGVQQLLAEIGPDFMLEEKIQIKQMQAA- >UniRef50_A8TFK3(510-583:584) DEAD/DEAH box helicase domain protein n=1 Tax=Methanococcus voltae A3 RepID=A8TFK3_METVO E=2e-07 s/c=0.77 id=18% cov=78% -----------VALGSMDNMDTRRLLRKVLEKSDVSKDNISEVNVYRNFSFISADEKTAKQIVDSFRSERRNGKPL--------- >UniRef50_UPI00016C557C(15-77:766) DNA-binding protein SMUBP-2 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C557C E=2e-07 s/c=0.90 id=25% cov=62% --------------------------------GKIDSKHVGKIAFVGRGATVEVPDGKAAAIVNALDGATLQAKPVRVRFAGKA- >UniRef50_C2ME86(472-552:553) ATP-dependent RNA helicase, dead/deah box family n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2ME86_9PORP E=8e-15 s/c=1.00 id=22% cov=96% -TDLPPMTSLRINLGKRDKLYPNRLLELI-NRTLPYKITIGKIDLSPSYSYFEVASEWAETVAAALSEEEYNGRPIRVTIQKD-- >UniRef50_A6DL95(397-475:482) Probable ATP-dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DL95_9BACT E=1e-10 s/c=0.85 id=18% cov=94% -ANIRDCSRIIVYGGKKQGLNNGLLKKILAKNCGLDDSDIGYIEVNEKHTLLGVLREKSSRVLTTLQKTKISGHILKLEL----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 A 2 314 * * * * * * * * * * * * * * * 2353 * * * 2 0 * * * * * * 3325 0 0 D 3 * * 376 * * * * * * * * 3062 3191 * * * * * * * 3 0 * * * * * * 4243 0 0 V 4 2682 * 4009 * 1935 * * 3232 * 3462 * 3761 * * * 3760 * 2508 * * 4 0 * * * * * * 4414 0 0 G 5 3976 * * * * 402 * * * * 4519 * 4587 * 4349 4461 * * * * 5 40 * 5181 * * * * 5215 0 0 D 6 5144 * 1380 2009 * * * * * * * 2559 3329 4473 * 5347 * * * * 6 59 4653 * 2585 263 0 * 5945 1337 1000 M 7 5266 5455 * 5518 3851 * * 3567 5473 3894 1316 * * 5540 5527 4647 3820 4480 4008 5420 7 28 5679 * 0 * * * 6100 1000 0 Q 8 3260 6133 4733 5234 * * * 6574 5017 6106 5903 * * 3272 5265 3236 1970 1979 * * 8 0 * * * * * * 6097 0 0 L 9 * * 5615 5014 * * 5822 * 3707 5202 * 6649 5785 * 1223 4070 2164 5166 4053 * 9 0 * * * * * * 6206 0 0 Y 10 * 6057 * * 2276 * * 2656 * 1728 5924 * * * * * * 4368 * 1982 10 0 * * * * * * 5974 0 0 R 11 6283 5917 * 4458 1841 6531 4465 4987 3619 * 6898 * * 5183 2317 5423 3824 6121 * 2920 11 0 * * * * * * 5972 0 0 I 12 4710 * * * 4047 * * 1321 * 2454 3723 * * * * * 6495 2109 * * 12 0 * * * * * * 5899 0 0 E 13 2779 * 3626 4006 * 4099 6248 * * * * 1539 5607 6701 6327 2075 * * * 6012 13 0 * * * * * * 5926 0 0 V 14 2822 * * * 6579 3097 * 2577 * 2489 5031 * * * 5097 6091 * 1685 * * 14 0 * * * * * * 5939 0 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 5998 0 0 R 16 6625 * 6983 6753 * * 4605 6813 1281 5495 * 5855 * * 1535 3207 * * 6901 6644 16 0 * * * * * * 5998 0 0 D 17 3454 * 5242 5024 6634 6359 * 5896 1526 4516 5274 3775 * 4275 2550 4498 4560 6198 * * 17 0 * * * * * * 5998 0 0 D 18 5053 * 941 5471 * 6736 3530 5466 4291 * * 5318 * 2907 5564 4536 4876 * * * 18 0 * * * * * * 5998 0 0 G 19 * * 4945 5627 7389 1241 4974 * 2013 6554 * 2846 * 5027 4104 * * * * * 19 0 * * * * * * 5998 0 0 V 20 3398 * * * 4133 * * 2116 * 2123 2943 * * * * * 6218 2194 6149 6414 20 0 * * * * * * 5998 0 0 E 21 4454 * 3614 3533 6433 4923 6460 * 4090 6157 6124 2945 * 5728 2365 3430 2507 * * 4970 21 0 * * * * * * 5998 0 0 V 22 2800 * * 6781 * * * 5906 2976 * * 6040 1004 6936 * 5517 4627 3346 5572 * 22 22 6075 * 1585 585 * * 5998 1000 0 R 23 3832 6568 6611 5676 5659 1843 * 6699 2589 5832 4636 4576 5801 6928 2203 5304 6161 4928 * * 23 0 * * * * * * 5998 0 0 H 24 4103 * 1428 5397 * 5917 4207 6546 3054 6040 * 3806 6149 4984 3867 4337 5801 5096 4412 * 24 0 * * * * * * 5998 0 0 I 25 * * * * 4239 * * 1118 * 1261 5280 * * * * * * 4524 * * 25 0 * * * * * * 5998 0 0 V 26 3895 5676 * * 5801 * * 3091 4787 1924 5599 * * 6487 * * * 1164 * * 26 0 * * * * * * 5998 0 0 G 27 4184 * 3472 3400 * 1192 6626 * 4245 * * 4923 4484 4800 3587 4288 6433 * * * 27 22 * 6075 * * * * 5998 0 0 A 28 1400 6859 6314 6285 2757 * 6875 4358 4777 2668 4415 * * * * 4681 4798 6954 * 4102 28 0 * * * * * 0 5971 0 1000 I 29 * * * * 3576 * * 1244 * 1529 5018 * * * * * * 3102 * * 29 17 * 6412 * * 0 * 5971 0 1000 A 30 2050 2438 * 4547 6460 * * 4297 4274 4520 6658 3960 * 5667 6143 2742 3589 * 6061 5788 30 0 * * * * 0 * 5990 0 1000 N 31 * * 4221 2665 * 3041 6368 6887 2743 * * 2167 * 3673 3259 4370 4526 * * * 31 29 6926 6382 1000 1000 * * 5998 1000 0 E 32 3238 * 4594 1751 6358 6140 6442 4659 3188 3776 5825 4138 * 5514 3589 4520 4276 5587 * * 32 9 7366 * 0 * 0 * 5986 1000 1000 G 33 2099 5150 5479 5024 * 2123 * 4707 * 4123 6534 5457 5800 * * 3447 2619 5471 * 4996 33 0 * * * * * * 6009 0 0 D 34 6533 * 3218 4550 * 1081 6365 6632 3478 6449 * 3672 * 6190 3568 4214 * 6302 * * 34 0 * * * * * * 6009 0 0 I 35 * * 6178 * * 6632 * 1376 5069 1862 4034 5430 6449 * * * 6418 2585 * 6392 35 0 * * * * * * 6009 0 0 S 36 4478 6612 2927 3573 5825 5575 6773 6163 3675 * * 3363 2849 5774 5520 2300 3554 * * 5314 36 0 * * * * * * 6009 0 0 S 37 3260 * 4410 6226 6612 2082 * 6707 2400 * * 5077 3884 6163 3178 2687 6299 * * * 37 0 * * * * * * 6009 0 0 R 38 4395 * 2877 3195 * 5060 5548 5596 2684 5677 * 3955 * 5123 2571 3417 4555 4857 6220 6122 38 43 5087 * 710 1364 * * 6009 1794 0 Y 39 3999 * 1611 3564 6339 6128 4477 * 4293 5807 7076 4009 * 3994 3506 3413 5491 6572 * 4711 39 0 * * * * * * 6009 0 0 I 40 * * * * 5909 * * 444 * 4347 * * * * * * * 2328 * * 40 0 * * * * * * 6009 0 0 G 41 * 6704 4798 * 5575 295 * * 5555 * * 6072 * 5294 4623 5971 * * * * 41 0 * * * * * * 6009 0 0 N 42 3650 * 2787 5971 * * 4848 5297 2371 6479 * 3260 6908 4211 2602 3859 4643 4667 * 6043 42 0 * * * * * * 6009 0 0 I 43 5677 * * * * * * 227 * 6128 * * * * * * * 3159 * * 43 0 * * * * * * 6009 0 0 K 44 5460 * 1980 2348 * 6973 * 6345 2782 * * 4317 * 4115 2332 4529 * 6391 * * 44 0 * * * * * * 6009 0 0 L 45 * 6122 * * 6810 * 4996 1039 * 2609 4771 * * * * * * 1953 * * 45 0 * * * * * * 6009 0 0 F 46 7402 * 5113 6302 2269 4952 4162 * 3486 3246 4453 3742 * 3126 3643 5500 6345 5207 * 3543 46 0 * * * * * * 6009 0 0 A 47 5912 * 1627 2232 6336 4349 * * 3927 * * 4054 3715 3585 4784 4327 6190 * * * 47 0 * * * * * * 6009 0 0 S 48 * * 3422 4415 5824 3942 3630 * 2763 * 6386 2428 * 5596 3380 3822 2702 6631 * * 48 0 * * * * * * 6009 0 0 H 49 5432 4983 * 3845 1427 6810 2636 6583 5140 5787 6718 5786 * 5546 6220 4390 5657 5120 * 3079 49 0 * * * * * * 6009 0 0 S 50 3412 5066 * * * 6302 * * * * * * * * * 789 1874 6386 * * 50 0 * * * * * * 6009 0 0 T 51 * * * * 1305 * 5562 4524 * 2483 * * * * 6365 6373 3174 4647 * 2500 51 0 * * * * * * 6009 0 0 I 52 4086 * * * 2631 * * 2585 * 4128 5352 * * * * * * 912 * * 52 0 * * * * * * 6250 0 0 E 53 3269 * 2143 1391 * 4744 * * * * * 4273 * 4306 6161 4680 3381 * * * 53 0 * * * * * * 6250 0 0 L 54 5129 * * * * * * 2292 * 2036 * * * * * * 5548 994 * * 54 0 * * * * * * 6250 0 0 P 55 3499 * 3370 3876 * * 5615 6363 5184 3707 6479 5503 1172 * 4358 4526 6821 6528 * 5563 55 0 * * * * * * 6219 0 0 K 56 2660 * 4389 2864 4956 5170 5523 * 2482 7031 5513 4066 5550 4446 3289 2976 6640 * * * 56 0 * * * * * * 6255 0 0 G 57 2828 * 2922 2403 * 2883 * * 4017 * * 3470 4670 4247 4242 3508 5808 * * * 57 0 * * * * * * 6362 0 0 M 58 4355 * 3848 4818 3841 5277 4321 3960 2752 2889 3910 5531 * 4156 6593 5414 5756 3618 6132 4043 58 0 * * * * * * 6352 0 0 P 59 1195 * 5088 6345 * 4200 6250 5027 5339 4557 * 6447 3136 * 6265 3611 5529 3129 * * 59 0 * * * * * * 6352 0 0 G 60 4572 * 2365 2781 * 4897 4985 * 3347 5458 6870 3513 3603 3638 4338 3277 5584 * * * 60 0 * * * * * * 6352 0 0 E 61 3359 * 3350 2505 5425 6486 5223 6567 2221 3465 * 4075 5559 4494 3925 6634 4913 5830 * * 61 0 * * * * * * 6352 0 0 V 62 3042 * * * 4046 * * 2523 * 3121 6016 * * 5917 * * 4099 1188 * * 62 0 * * * * * * 6290 0 0 L 63 4249 * * * 3611 * * 2712 6252 1266 3735 * * * * * 5791 3031 6289 4163 63 20 * 6219 * * * * 6290 0 0 Q 64 3431 * 2800 2534 * 4771 * 6221 2551 * * 3153 * 3888 3841 3510 4929 * * * 64 0 * * * * * 0 6243 0 1000 H 65 2060 * 6257 5124 6354 3991 4168 3334 3055 6132 * 4694 * 4409 3862 4146 3633 4003 * * 65 19 * 6279 * * * 0 6243 0 1000 F 66 * 6390 * * 3172 * * 4044 * 775 3002 5982 * * * 4872 * 4508 * 6242 66 14 6687 * 0 * 910 1096 6205 1000 1727 T 67 5399 6652 4355 4248 * 3509 6516 * 2187 * 6311 2888 4833 3225 3448 2783 5662 * * * 67 17 * 6430 * * * 0 6198 0 1000 R 68 5829 * 3640 3821 * 2657 6723 * 2699 * * 2863 5868 4320 3135 2959 4946 6266 * 5873 68 0 * * * * * 0 6161 0 1659 T 69 2912 5765 5868 3592 6268 4851 * 3977 4326 4267 4604 4094 * 6107 6253 3900 2298 3207 * 5065 69 0 * * * * 0 * 6161 0 1659 R 70 5685 * 6203 6082 4443 * 5207 5455 2164 6732 6348 5243 4807 4293 2070 4364 2664 * 4869 5674 70 19 6233 * 1000 1000 * * 6191 1000 0 I 71 * * * * 4314 5678 * 1280 5660 2966 4178 5953 * * 5586 * * 2149 * 4236 71 0 * * * * * * 6168 0 0 L 72 3404 4848 4650 4104 5947 6301 * * 1740 4610 * 2726 * 6103 2725 3528 * * * * 72 19 6246 * 0 * * * 6185 1000 0 N 73 6103 * * 4072 * 543 * * 3164 * * 3396 * 5540 * 6412 * * * * 73 0 * * * * * * 6185 0 0 K 74 5891 6370 5499 4628 * * 4334 * 1247 6281 5436 5803 * 4151 1792 * 6284 6262 * 6268 74 0 * * * * * * 6174 0 0 P 75 4296 * 5346 3452 6536 5430 6435 5838 2268 5382 * 5289 2682 4044 2400 3987 5174 * * 5945 75 0 * * * * * * 6117 0 0 M 76 4008 5906 * * 4477 * * 2718 * 1527 4486 * * * * * 5903 1716 * 6454 76 0 * * * * * * 6052 0 0 N 77 5545 * 5967 5276 * * 5166 * 2628 5812 * 1614 * 3711 2276 3711 * 4524 * * 77 0 * * * * * * 5876 0 0 M 78 3878 * * * 5993 * * 1471 * 2340 3585 * 5739 * * * * 1966 * * 78 0 * * * * * * 5876 0 0 Q 79 * * * 1105 * * * * 3742 * 5683 * * 5227 2157 4491 3350 6033 6081 5850 79 0 * * * * * * 5835 0 0 L 80 * * * 4186 5578 * * 2058 5600 3168 * * 1894 5042 4669 * * 2229 * * 80 0 * * * * * * 5775 0 0 L 81 931 * 5197 5463 * * * * * 2310 3465 * * 4980 * 4315 5126 * 5440 * 81 39 * 5213 * * * * 5514 0 0 G 82 4017 * 5062 * * 1749 * * 1192 * * * * 4285 4432 4706 4752 * * * 82 0 * * * * 0 * 5268 0 1000 D 83 3108 * 890 4546 * 3770 * * 4318 * * 3373 * * * 3618 * * * * 83 0 * * * * * * 4722 0 0 A 84 318 * * * * 3363 * * * * * * * * * 3317 * * * * 84 0 * * * * * * 3966 0 0 Q 85 * * * 610 * * * * * * * * * 1536 * * * * * * 85 0 * * 0 * * * 1740 0 0 //