HHsearch 1.5 NAME c5b42A_ FAM FILE c5b42A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5b42A_.a3m DATE Sat Jul 16 08:15:51 2016 LENG 101 match states, 101 columns in multiple alignment FILT 112 out of 504 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.5 EVD 0.4137 0.4070 SEQ >ss_dssp CCSCEEEEEETTTEEEEECSSEEEEEEHHHHHHHHHHHHHCCHHHHHHHSCCTTCCCCHHHHHHHHHHHTTCSCSSBCTTSCBSEEEEEHHHHHHHTTCC C >sa_dssp EEECDDECCDEDCCACBCBCDDBCCACACBABABCCCCEDEDDEDACEDBCDDDDEBDEDCBDDBAEDBDEBECCDDACDEEEACEDCDBEDDDDEEEEE E >ss_pred CCCEEEEEEEECEEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHCCC C >ss_conf 9860798996071899983894999972465168889999986405511212698788899999999998379986587797189995889999852788 9 >Consensus kpxxxxlGqxxxxyiixexxxxlxliDQHaAhERilyexlxxxxxACkxAIkxgxxLsxxExxxLixxLxxxxxPxxCPHGRPxxxxlsxxelxkxFxRx x >c5b42A_ KPTYEILGQMDETFILVKDSEYLYFVDQHLLEERINYEKLKDENLACRISVKAGQKLSEEKIRELIKTWRNLENPHVCPHGRPIYYKIPLREIYEKVGRN Y >UniRef50_UPI0001C36EE5(488-676:677) DNA mismatch repair protein MutL n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36EE5 E=7e-06 s/c=0.27 id=27% cov=99% KPKIRVIGEAFGLYVIAEvGDNTVIMIDKHAAHERIIFERLKSRNcrqysqklltgikvlmtgdevsalqentelladlgfefdfsespcviatavptfv meldvediiseiasnlrmyahnpqshmlddmlhtVACKSAIKANDKNDMAELQSLAEQVYYDERIRHCPHGRPVMFTMTKNNIAHQFKR-- >UniRef50_D1R516(377-468:469) Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R516_9CHLA E=3e-05 s/c=0.54 id=19% cov=92% -----LFGNSDITYFVDELIKTLAEMNQSSALKKEKDKCL--AQIASKAAIRKEHILSLLEAQNLVRQLWECQSPLYCPFGKPIAIHLSREEIARQFQK- - >UniRef50_C7LKJ7(386-542:544) Putative DNA mismatch repair protein MutL n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKJ7_SULMS E=0.0001 s/c=0.30 id=27% cov=89% --------QIYNSYLLGVIKSGLLLVDQNRAHQRILYDFFYKkksknlkidkksflkkilsklnylgfkifvlkkkilvqsfslgikktniskilekife nekmkknilyKYICKYFSLKKGKKISNLEIKGLIKKLFVSNNPYYSPFGEKILLNVSKEKIKKLF---- >UniRef50_A0L6G5(441-631:632) DNA mismatch repair protein MutL n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G5_MAGSM E=1e-14 s/c=0.42 id=27% cov=98% -PLGQAVAQLHNLYIVAQSEQGMVLIDQHAAHERIVYERMKGawarkekvetqmllmpevlqlseveaermshwrstlqqlgiavepfgqnafvirevpa llargqiaplvrdvveqleqvgqesalseaqdavlASMACHGSVRSGRALTREEMNALLREMERTPHTGQCNHGRPTHVRLSLADLERLFER-- >UniRef50_C7PJX8(516-630:630) DNA mismatch repair protein MutL n=2 Tax=Sphingobacteriales RepID=C7PJX8_CHIPD E=7e-11 s/c=0.59 id=22% cov=97% -PDLQILGYdlepfGNNTFVVRGTPADIQsgneqasiegLLEQfkHFSHELKLPRREQLIRSMARnNSIQAGKSLSTREMQNIIDELFACTMPNSSPGGK YTYISFKLTDLAKMFG--- >UniRef50_A8F560(460-548:549) DNA mismatch repair protein mutL n=1 Tax=Thermotoga lettingae TMO RepID=MUTL_THELT E=4e-09 s/c=0.70 id=23% cov=89% ------LDQSDVKRFIIDSIDEIKLIDIYGLEEVM---KKIIADISCKSALRTRDRLDLSQAKYLVREIFA-NKISTCPHGRPVMYSINFKELDSFFER- - # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * 2473 * * * * 433 * * * * * 3658 * * * * * 1 0 * * * * * * 3416 0 0 P 2 * * * * * * 4430 * 4127 * * * 253 * * * 4124 * * * 2 39 5240 * 0 * * * 4305 1000 0 T 3 2203 * 3012 4228 * 4305 4308 * 3584 * * * 3539 3454 * 2862 3665 5188 * * 3 0 * * * * * * 4530 0 0 Y 4 * * * * 2695 * 6251 4007 * 1323 2610 * * * * * * 3258 * 3290 4 69 6468 4827 1585 585 * * 4959 1000 0 E 5 5483 * 5959 2575 5350 * 4758 * 2613 6114 * * * 3237 1748 3427 5888 6450 6080 6109 5 0 * * * * * 0 4929 0 1000 I 6 5224 * * * 3942 * 6248 1985 * 3013 * * 3239 * * * * 2085 6528 2588 6 0 * * * * 0 * 5134 0 1000 L 7 * * * * 4224 * * 1957 4997 1046 6326 * * * 5728 * * 2818 * * 7 0 * * * * * * 5207 0 0 G 8 3477 5733 4607 6440 * 396 * * * * * * * 5002 * * 5076 * 5782 * 8 34 5407 * 1333 730 * * 5207 1518 0 Q 9 * * 6110 4535 6428 * * 5609 5541 5748 * 5381 * 575 * 4452 5258 4316 * 4245 9 38 5271 * 2322 322 * * 5274 1000 0 M 10 3846 * * * 2985 5281 * 3240 * 1805 4942 * * * * 4541 6355 2219 4182 5118 10 0 * * * * * * 5360 0 0 D 11 3398 * 2424 4955 2732 4578 2732 * 4151 5839 6468 3489 6425 6248 4927 4810 * 6225 6877 4203 11 0 * * * * * * 5360 0 0 E 12 6370 * 2616 3984 * 2770 * 4450 2979 4500 * 2605 5446 3485 4187 4393 * 5707 * * 12 0 * * * * * * 5360 0 0 T 13 4588 * * 3790 * 4006 * * 2872 4162 5658 5109 * * 3330 2995 1483 * * * 13 0 * * * * * * 5360 0 0 F 14 4821 6555 * * 1948 * * * * 6278 * * * 5606 5758 * * 6325 * 665 14 0 * * * * * * 5375 0 0 I 15 5091 * * * 4285 * * 824 * 1994 * * * * * * * 3391 6926 * 15 0 * * * * * * 5408 0 0 L 16 4828 * * * 6571 * * 1881 * 1644 5048 * * * 6048 * * 1655 * * 16 38 5269 * 1494 633 * * 5408 1586 0 V 17 2070 3131 5464 * 3685 4101 * 4370 * 3758 6723 5546 * * 4489 5894 3269 2761 * 5431 17 16 6532 * 2000 415 * * 5408 1000 0 K 18 5744 * 3637 1199 5333 4792 * * 4183 6808 * 6630 5894 2699 4756 3818 6181 5305 * 6325 18 14 6708 * 0 * * * 5408 1000 0 D 19 4034 6175 2716 * 5420 3528 5105 4553 4458 3980 * 3636 * * 3682 3192 3536 3576 * 4490 19 0 * * * * * * 5408 0 0 S 20 3356 * 2523 2638 * 2707 * 4257 2684 * * 4644 3510 5363 6724 4473 * * * * 20 0 * * * * * * 5408 0 0 E 21 4586 6113 2227 2363 * 2910 5301 * 4498 6145 * 3409 * 3991 4700 3240 5819 * * * 21 17 6439 * 2585 263 * * 5408 1000 0 Y 22 4117 * 3146 2674 * 1506 * 6341 3984 * * 6557 * 4298 5310 5109 3990 5495 * 4494 22 36 5359 * 394 2065 * * 5408 1906 0 L 23 6351 * * * 4158 * * 2864 * 718 3736 * * * * * 6565 3522 * 6167 23 0 * * * * * * 5440 0 0 Y 24 4996 6392 * 4242 3375 * 6023 4629 5817 2187 4339 * * 5360 * * 6767 2680 3992 2234 24 86 4117 * 2322 322 * * 5440 2280 0 F 25 5413 * * 5503 3983 * * 1803 * 1182 5390 * * * * 4933 5563 3535 * * 25 35 6565 6205 0 * * * 5440 1000 0 V 26 * * * * * * * 1136 * 3212 3695 * * * * 5661 5510 1813 6143 5679 26 0 * * * * * 0 5421 0 1000 D 27 5752 * 206 4553 * * * * * * * 4268 * * * 5661 * * * * 27 0 * * * * * 0 5421 0 1000 Q 28 6290 * 5510 6056 4981 * * 5813 4561 4892 * * 5496 397 * * 5032 * 6301 * 28 59 4641 * 636 1488 * 0 5421 1651 1000 H 29 * * * 5661 * * 232 * 6056 5752 * 5273 * 5104 * 5490 * * * 5813 29 23 6000 * 1000 1000 * 0 5421 1000 1000 L 30 735 * * * 5318 4406 * 4333 * 5535 * * * * 3438 3861 4640 4196 * * 30 0 * * * * 0 * 5421 0 1000 L 31 434 7479 * * * 6744 * 6443 * 3358 * * * * * 3879 * 3879 * * 31 0 * * * * * * 5440 0 0 E 32 5688 * 4256 5066 * 5361 541 * * 4533 6163 4545 * 4811 6152 5295 * * * 6426 32 0 * * * * * * 5440 0 0 E 33 5566 * * 258 * * * 5213 4951 * * * * 4941 5685 * 4981 * * * 33 26 5796 * 0 * * * 5451 1000 0 R 34 6166 * 4625 6081 * 6028 * 6563 3817 5438 * * * * 334 * * 5823 * * 34 13 6755 * 6443 17 * * 5451 1000 0 I 35 5381 * * 5567 * * * 1270 4893 3857 4689 * * 6166 6591 * * 1518 * 5292 35 26 * 5823 * * * * 5451 0 0 N 36 5375 * * * 6754 6708 6728 3432 3535 1196 5953 2544 * * 3995 * 5001 4306 * * 36 0 * * * * * 0 5415 0 1000 Y 37 6411 6048 4510 5431 1635 * * * * 3778 * * 4704 * * 5983 * 7399 * 1148 37 28 5685 * 5680 28 * 0 5484 1587 1000 E 38 5842 * 2949 629 * * 5391 * 4431 5983 * 6735 * 4835 5368 5118 6877 * 6126 * 38 82 4175 * 6282 19 0 * 5484 2659 1000 K 39 5035 5568 6654 4292 5515 * * 4133 2084 5071 5907 5722 * 3828 1536 6464 4691 6210 * 5127 39 55 4750 * 6003 23 * * 5452 1998 0 L 40 5559 * * 4787 2871 * 5902 3281 5840 983 4882 * * * 7361 * * 6613 6421 3306 40 182 3679 4636 6087 21 * * 5465 3042 0 K 41 * 6480 * 3975 * 5137 * 3561 2350 3112 3072 * * 3242 2400 5029 * 6355 6084 5126 41 49 4914 * 6288 19 * 0 5452 1966 1595 D 42 2903 * 3830 3198 6206 4762 6290 4477 2874 3660 6084 4308 * 4056 3067 3615 5195 * 6669 * 42 327 2496 5304 6073 22 0 * 5452 3948 1595 E 43 2271 * 5641 2850 * 6471 3529 4950 3153 * 4689 3824 * 3424 3814 3812 4425 * * * 43 314 2438 6481 6355 18 * 0 5409 3799 1000 N 44 4418 5328 3683 4698 4685 6783 6721 5216 5801 3836 3586 5509 * 4881 3537 2888 2371 5174 * 4100 44 133 3509 * 6291 19 0 * 5399 3086 1760 L 45 5047 * * 4557 4302 6482 * 2596 5279 2250 2248 * * 4727 4319 4945 4909 3882 * 4962 45 177 3117 * 6035 22 * * 5409 3514 0 A 46 542 6004 * 6108 * * * 4625 * * 4919 5584 * 5471 * 2842 * 5227 * * 46 101 3884 * 6169 20 * * 5855 2828 0 C 47 5051 416 * * * * * 6676 4341 * * 5079 * 5252 4199 4290 * * * * 47 15 6617 * 5858 25 * * 5866 1000 0 R 48 * * * * * * 2576 * 1307 6630 * * * 6318 1515 5687 * * * 4786 48 39 6109 6373 0 * * * 5866 1000 0 I 49 2437 * * * 6004 2740 4240 6908 5375 5438 4609 4154 5653 4815 5099 1945 3509 * * 6333 49 52 4810 * 3316 153 0 * 5855 1945 1000 S 50 582 * * * * * * 5502 * * * * * * * 1755 * 6213 * * 50 29 5650 * 5815 26 * * 5828 1570 0 V 51 * 6488 7060 * 5206 * * 1165 5924 3677 5499 * 6332 * * * 5419 1544 6298 * 51 32 5502 * 5215 39 * * 5828 1565 0 K 52 * * 6439 * * * * * 976 * 3758 6128 5772 5082 1780 5257 6719 5854 * * 52 50 5543 6324 5412 34 * * 5841 1583 0 A 53 1472 6150 6466 * 3401 3871 * 4211 3985 4389 7181 6193 5909 * 4615 3327 4462 5325 * 4705 53 0 * * * * * 0 5827 0 1000 G 54 * * * 6670 * 580 4115 * 6144 * * 2451 7021 * 6141 * 5696 5296 * * 54 0 * * * * 0 * 5827 0 1000 Q 55 5013 * 1698 3051 * * 4402 4227 4077 6576 5689 4081 * 3263 4371 5024 3520 * 6430 6776 55 55 5967 5553 0 * * * 5841 1000 0 K 56 4852 * 4384 5698 5386 * 5178 4647 2094 5644 * 6636 3028 5001 2879 3197 3996 4090 * 5496 56 0 * * * * 0 * 5825 0 1571 L 57 * * * * 4429 * * 2937 * 520 4384 5940 6695 * * * 5043 5534 * * 57 0 * * * * * * 5841 0 0 S 58 4559 * 3107 4153 * 5362 * 7008 5190 5131 * 3205 6580 * 6715 1367 2463 * * * 58 0 * * * * * * 5841 0 0 E 59 5656 * 3404 2612 5705 5499 5298 4483 4643 3679 4262 3980 2884 4926 3335 4564 4666 5496 * 7416 59 0 * * * * * * 5848 0 0 E 60 2749 * 2961 1952 6907 5364 5110 6796 4425 4525 5173 5289 4610 4661 4461 3295 5460 * * * 60 0 * * * * * * 5848 0 0 K 61 5634 * 5156 623 6183 5891 5641 6972 5956 * * * * 3384 4463 5136 4100 * * * 61 0 * * * * * * 5857 0 0 I 62 1994 5532 * * 6011 4690 * 2819 5572 3784 1678 * * 4659 5511 4874 * 5069 * * 62 0 * * * * * * 5857 0 0 R 63 4052 5931 4342 3350 * 5204 5332 4584 2818 4337 7107 4615 6384 2655 2994 4658 4446 4331 * 6438 63 0 * * * * * * 5857 0 0 E 64 2228 * 5371 3089 5592 4850 5712 6384 3541 4246 6520 3779 * 4422 3614 3077 4350 6602 5903 6239 64 0 * * * * * * 5857 0 0 L 65 * * * * 6641 * * 2410 * 392 * * * * * * * 4652 * * 65 10 7115 * 0 * * * 5857 1000 0 I 66 4280 6221 * 7125 6626 * * 2140 6749 1719 5236 * * * * * * 1640 6441 5714 66 16 * 6488 * * * * 5857 0 0 K 67 4111 * 2795 2498 * 4773 5111 * 3002 4887 7197 3199 * 4341 2812 4955 4372 * * 6811 67 0 * * * * 0 * 5827 0 1000 T 68 3855 * 2472 2843 * 4384 6513 * 3891 5008 6706 3706 * 2395 3077 4520 6960 7075 * * 68 0 * * * * * * 5841 0 0 W 69 6508 * * * 6169 * * 4340 6713 438 4307 * * * 7092 * * 4502 3716 * 69 0 * * * * * * 5841 0 0 R 70 3513 * 3529 4030 2006 4826 5408 5852 3695 3499 4147 6968 6375 6116 4027 4169 5843 * 6646 4696 70 0 * * * * * * 5841 0 0 N 71 2269 * 4683 3168 6496 4985 4466 5379 3764 4374 6209 4289 * 4269 2927 3770 5299 4631 * 5535 71 24 * 5951 * * * * 5841 0 0 L 72 4758 1473 4771 4666 * 6575 * 4633 * 3143 * * * 6463 * 3376 2303 4546 * 6708 72 42 6351 5916 5492 32 0 * 5833 1000 1476 E 73 4129 * 2413 2130 * 5616 * * 2966 * * 4364 3665 4068 3901 3496 5216 6841 * * 73 0 * * * * 0 * 5848 0 1281 N 74 6588 5813 3165 3882 3658 4862 6018 4770 3839 3821 4313 2660 * 4103 5007 3770 4040 4685 * 6019 74 0 * * * * * * 5841 0 0 P 75 4457 6195 * 7335 7068 6203 6011 4567 5017 5188 6029 * 538 * 5284 4771 6713 * * 5533 75 0 * * * * * * 5841 0 0 H 76 3730 * 5830 4491 3347 5277 4704 * 6172 4721 5350 2994 5276 6624 4353 4376 4374 * 3886 2003 76 74 6375 4711 3907 100 * * 5841 1000 0 V 77 3568 6330 * * 4767 * 2943 5267 5963 4281 * 3670 * 3868 5486 3554 2353 4272 * 2825 77 0 * * * * 0 * 5820 0 2382 C 78 6242 427 4562 * * 5813 * * * * * 6513 * * * 3460 3628 * * * 78 0 * * * * * * 5841 0 0 P 79 4465 * * * 6616 * * * * * * 5764 242 * * 5263 * 4929 * 5508 79 0 * * * * * * 5841 0 0 H 80 6513 * 3498 5986 3869 5337 438 * * * * * * 6406 * 6209 5146 * * * 80 0 * * * * * * 5841 0 0 G 81 * * * * * 72 * * * * * 5711 * 6037 * 6151 * * * * 81 0 * * * * * * 5841 0 0 R 82 5813 * * 5257 * * * * 2996 * * 6242 * * 418 4546 5255 * * * 82 0 * * * * * * 5841 0 0 P 83 6437 * * * * * * 6616 5126 5206 * * 339 * * 4775 4158 5217 * 6292 83 0 * * * * * * 5841 0 0 I 84 5726 5598 * * 6343 * * 2153 * 5684 * * * * * 4499 1420 1806 * * 84 0 * * * * * * 5841 0 0 Y 85 4260 5162 * * 3139 * * 2459 * 2782 3197 * * * 6904 4381 4924 2563 5372 3517 85 14 6746 * 0 * * * 5841 1000 0 Y 86 4303 7059 * * 4015 * 4702 1848 5984 2502 4051 * * * 4523 6151 4302 2718 * 4298 86 0 * * * * * * 5841 0 0 K 87 5846 * 5488 3632 4881 * 4278 5205 3245 5141 5206 4162 4148 4570 2449 3826 3555 3586 * 5068 87 0 * * * * * * 5841 0 0 I 88 * * * * 3375 * * 1767 * 1329 3536 * * 6548 * * * 4289 5065 4892 88 24 5896 * 0 * * * 5841 1386 0 P 89 7053 * 4103 5693 6515 4009 * * 3581 * 6387 3921 3663 4969 4717 1408 2773 * * 6908 89 0 * * * * * * 5719 0 0 L 90 5481 7014 4330 2559 4607 6020 5569 4701 3224 2411 4960 7146 4992 * 3629 4397 5354 4289 4672 5275 90 0 * * * * * * 5719 0 0 R 91 4481 * 2656 2481 6052 4823 6754 * 2748 4373 * 4208 5064 4065 3839 4348 4250 5502 * 5424 91 0 * * * * * * 5719 0 0 E 92 5722 * 2129 1011 6534 * 6427 * 3657 5849 * 5863 * 5301 6687 5369 5297 6709 * 5279 92 0 * * * * * * 5722 0 0 I 93 * * 6334 * 5344 * * 1492 6492 850 5654 * * * * * * 5514 * * 93 0 * * * * * * 5710 0 0 Y 94 2709 * 2366 1568 6137 4893 * 6995 3602 5087 * 4947 * 4886 * 6350 6113 7078 5359 5405 94 0 * * * * * * 5652 0 0 E 95 * * 4404 5344 * * 4467 * 984 * * * * * 1816 3836 6518 6358 * * 95 0 * * * * * * 5652 0 0 K 96 4811 6260 6312 6017 4430 6652 4792 5989 2503 2695 3089 * * 3662 2658 4416 * * 4663 4541 96 0 * * * * * * 5633 0 0 V 97 * * * * 139 * * 5258 * 6022 6318 * * * * * * 4726 * * 97 25 * 5867 * * * * 5651 0 0 G 98 * * 6189 3069 5445 1524 6310 * 2098 4992 * 4610 * 3110 4930 6628 * * * 5713 98 0 * * * * 0 * 5309 0 1000 R 99 * * 4859 * * * * * 4400 * * 5604 * * 156 * * * * * 99 0 * * * * * * 5205 0 0 N 100 * * 2136 3330 * * 4494 * 3727 * * 2544 * * 4344 1870 * * * 4086 100 0 * * * * * * 4281 0 0 Y 101 * * * * * * * * * * * * * * * * * * 2132 374 101 0 * * 0 * * * 3099 0 0 //