HHsearch 1.5 NAME c5abrB_ FAM FILE c5abrB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5abrB_.a3m DATE Thu Feb 9 15:50:05 2017 LENG 104 match states, 104 columns in multiple alignment FILT 105 out of 567 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.7 EVD 0.4098 0.0773 SEQ >ss_dssp CCEEEEEECCCCCTTCTTCCTTTTTHHHHHHHHHHHHHHTTCTTTEEEEEESCCSCGGGCSCEEEETTTEEECSCCTTHHHHHHHHTTTTSCCCGGGBCC TTTC >sa_dssp EDCCACABCDECEEEDEDCABCEDDBEDADDBACEBBEEDEBDEDBCCDECDDCDBBDABBAABADEECCBAAEBEDEBACDAADDBBDEEECCEECDBC EEDE >ss_pred CCEEEEEECCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEECCCEEECCCCHHHHHHHHHHHHHCCEECCEEECC CCCC >ss_conf 9759999278998877546435468799999999974217899718999840125457872799927864762689999999999996568460123057 2439 >Consensus PxxxixVCxxxrxxxxxxxsCxxxGsxxixxxlxxxlxexxlxxxvxixxtxClGxCxxgPxvxVxpxxxxYxxvxxxxvxxIiexhixxgxxvxxlxxp xxxx >c5abrB_ PEFHIFICAQNRPAGHPRGSCGAKGAEGVYNAFAQVLIQKNLTNRIALTTTGCLGPCQAGANVLIYPGAVMYSWVEPADAAIIVEQHLLGGEPYADKLTP AEIW >UniRef50_A5N6F8(4-94:320) NADH dehydrogenase-related protein n=2 Tax=Clostridium kluyveri RepID=A5N6F8_CLOK5 E=6e-11 s/c=0.75 id=23% cov=87% -KKKIYVCCGT--------GCIAKNSMSIFEEFRDKIHEMEIDAEVsaKLTSSVCSGICDKGPVVKIYP-NITYYGVKIKDVEEIIQRTVVNDEIVSRLI K----- >UniRef50_A3PDY1(7-103:116) Ferredoxin n=6 Tax=Prochlorococcus marinus RepID=A3PDY1_PROM0 E=7e-16 s/c=0.88 id=23% cov=90% --KHLLLCATPTKQKCFKGNEGQKAWECMKKTLKKFENDPSTKNvHILRSKADCLRVCKNGPILLIWPDGIWYEKISPEKISEIFTSHIINGKPIE---- ----- >UniRef50_A0LEQ9(44-138:483) Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEQ9_SYNFM E=1e-05 s/c=0.54 id=23% cov=72% ------------------SVCVPRGecschCNAVRDALMEEIARRRVGVVVGGAKFGCRGNCRNGPFLGFPQRDFFYCKVNPRDIPGIVNETLINGR--- --------- >UniRef50_C0A2T6(4-102:102) Ferredoxin, 2Fe-2S n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2T6_9BACT E=2e-17 s/c=0.91 id=23% cov=95% PTHHLFVCGSFRANGERQGVCHKKDSMSLLSYLQSEVQDRMLDG-VEIAVTGCMNFCVKGPVMVDYPAGNFYRVPDNAAIDAILDA-IEEDAVAEDYLIP ---- >UniRef50_C1XXS0(75-167:183) NADH dehydrogenase subunit E n=2 Tax=Meiothermus RepID=C1XXS0_9DEIN E=8e-12 s/c=0.77 id=23% cov=87% -KHHIQVCATL--------SCAIGGADELWDELVQTLgilpGEVTADGLFSIQKVECLGSCHTAPVVQINDEPYV-ECVTKARLQALLQG-LREGKRLEE IQLP---- >UniRef50_A9S4X0(534-626:629) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S4X0_PHYPA E=3e-07 s/c=0.60 id=23% cov=76% ------------------GKCRRGGSQEILAAFQESIPESS---NLSATSCKCMGKCKSAPNVRVKNSDgisQLHSHVSAEDVDTLLELHFGmqpSGNPM PVLMA----- >UniRef50_C1E4A0(238-342:466) Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4A0_9CHLO E=3e-08 s/c=0.57 id=19% cov=87% ---HLFVCTHMK----RDARCGVCG-PALIESIRDELKRLDIaDDAVAVRGCSHTGGHKYAGNLLLFVPEKglaakvedagetkgvWYGYVTAAEIPAVL ERTVMRGEVIPRL------- >UniRef50_B1M5R5(2-99:133) Putative uncharacterized protein n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1M5R5_METRJ E=0.0001 s/c=0.48 id=20% cov=77% PETILYVCTTCRRSDDDPD--GPRAGARLLEALRAR---SGGTPDLRVEAVECLSVCKRPCTVAVAAPDRWtyvYGDMDPAASAEII------------- ------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 4670 0 0 E 2 4276 * 3654 2791 5304 5000 * * 1398 * * 5288 4248 5253 * * 2442 * * * 2 0 * * * * * * 5833 0 0 F 3 5584 * * * 3853 * 1688 4549 2587 * * 5746 * * 2529 * 4317 * * 2753 3 29 5675 * 1000 1000 * * 6123 1000 0 H 4 * 5765 4312 5610 * * 1156 5173 4287 4945 * 6038 * 3242 3781 5916 4076 4824 * 4452 4 20 6207 * 3459 138 * * 6228 1000 0 I 5 * * * * * * * 1226 * 2045 * * * * * * * 1599 * * 5 0 * * * * * * 6371 0 0 F 6 5132 * * 6149 1793 * * * 5123 1573 3674 6207 * 6059 * 6058 * 3731 * 3224 6 51 4844 * 0 * * * 6390 1543 0 I 7 5898 5914 * * 4880 * * 2498 5405 3123 * * * * * * * 734 5972 * 7 0 * * * * * * 6431 0 0 C 8 * 0 * * * * * * * * * * * * * * * * * * 8 51 * 4853 * * * * 6431 0 0 A 9 3402 4073 4450 4693 * 4381 4587 5033 6230 5166 5258 4186 * 3805 4982 * 1377 5013 * * 9 23 * 6001 * * * 0 6431 0 1626 Q 10 5741 * 5970 * * 1323 2820 * 4262 * * 2492 * 4723 * 3584 3779 * * * 10 356 * 2191 * * * 0 6415 0 2217 N 11 * 4455 5430 5751 5297 4587 4438 5855 4430 3430 5093 4137 2518 3811 3649 3478 2819 * * * 11 502 * 1766 * * * 0 6078 0 4739 R 12 4730 * * 5027 * * 4068 * 3405 * * * 4736 4553 711 * 3528 * * * 12 931 * 1073 * * * 0 5689 0 5579 P 13 3919 * * 4060 * * * 3702 3160 4555 * 3978 1385 * 2711 * * 4516 * * 13 100 * 3898 * * * 0 4594 0 6070 A 14 3022 * 1875 3436 * * * * * 3637 * 2603 2957 * * 2857 * * * * 14 334 * 2276 * * 2944 201 4486 0 5997 G 15 * * 2441 4327 * 709 * * * * * * * * * * 3578 3823 * * 15 0 * * * * 3169 170 4667 0 5971 H 16 * 3364 3005 3218 4103 4336 3010 * 3811 * * 3504 * 4131 * 2837 * 3597 * * 16 62 * 4560 * * 3296 155 5061 0 5787 P 17 3989 * 4307 4380 * * 4289 * 2932 * * * 3014 3302 2377 3000 * 3743 * 4684 17 0 * * * * 4738 55 5333 0 5446 R 18 4456 3549 2035 * * * * * 2310 * * 4530 4352 3190 2895 4636 * * * 4417 18 0 * * * * 1521 618 5375 0 5521 G 19 3643 * 5485 5286 * 1726 * * 3303 * * * 4422 * * 1564 * 3582 * * 19 33 * 5485 * * 901 1106 6687 0 5534 S 20 2720 2558 5335 * 5738 4662 * * 4104 * 6167 5822 6632 * 5942 1539 3641 4716 * 5869 20 0 * * * * 266 2571 7018 0 3856 C 21 5351 80 * * * * 6058 * * * * * * * * * * * * 6096 21 0 * * * * 0 * 7192 0 1000 G 22 3051 * 5487 6689 4587 2163 3164 4980 4453 6788 5414 3864 4870 4675 3838 5155 5060 3949 * 5249 22 104 3842 * 0 * * * 7191 3126 0 A 23 2392 6473 5809 5579 * 6820 * 3890 2833 3712 * 5380 4262 5469 2606 3036 * 3615 * * 23 31 5535 * 0 * * * 7222 1681 0 K 24 2866 6223 6540 5504 4717 4125 5455 * 2273 5107 5139 5339 * 4128 2291 4306 4700 4796 * 5443 24 64 6834 4857 0 * * * 7222 1000 0 G 25 4694 * 4714 4992 * 340 * 6464 6455 6632 * 4776 * 6628 * * * 5493 * * 25 109 4765 4804 1633 562 * 0 7196 2292 2326 A 26 1512 5867 * 6568 * 2655 * * * * * 5738 * 6718 * 1420 5466 5095 * 6775 26 33 * 5466 * * 233 2746 7147 0 3364 E 27 3371 * 3025 2926 * * 4901 * 4445 3326 4063 4716 4305 3019 3244 5797 7278 5381 * 4507 27 15 * 6638 * * 1031 969 7175 0 1587 G 28 2726 * 3854 2163 * 3682 5304 * 4135 5019 5930 4217 4343 3442 4485 4045 4699 6615 * * 28 29 * 5676 * * 0 * 7217 0 1595 V 29 5512 * * * 4866 * 6621 2211 * 1746 * 4623 * * * 6481 3903 1732 * * 29 15 6622 * 0 * 0 * 7238 1000 1603 Y 30 4056 * * 4293 4757 * 6824 3745 6783 1484 5754 * * 5130 4478 5813 5439 4047 3872 2833 30 10 * 7195 * * * * 7261 0 0 N 31 3238 * 2767 2164 5427 5108 6605 * 3559 4691 * 3831 6405 3719 3695 3819 6780 5465 * * 31 0 * * * * * 0 7263 0 1000 A 32 1538 * 6605 2702 6725 * 4409 4800 5137 5265 5704 * * 4914 4650 4412 3709 5011 6606 3506 32 16 * 6508 * * * 0 7263 0 1000 F 33 4967 * * * 2348 * * 3177 * 990 4127 * * * * * * 3315 * * 33 0 * * * * 894 1114 7247 0 1674 A 34 4418 5838 6884 2456 * 6808 * 4932 2699 5162 5179 4325 * 3438 2070 5173 4316 4817 * * 34 0 * * * * 0 * 7263 0 1000 Q 35 3748 * 2903 2259 * 5467 * 6649 3325 5579 * 4938 * 2619 3313 3972 4229 5903 * * 35 40 5541 7353 1590 582 * * 7261 1682 0 V 36 2768 * * 2139 4773 6568 4329 4730 3791 3457 5573 4950 * 5703 3130 6855 3810 5097 5730 6220 36 73 6225 4788 2000 415 * 0 7266 1596 1000 L 37 3638 5226 * 5456 6306 * * 2096 * 1296 5567 * 6521 * * 6431 5156 3009 * 5605 37 172 3300 6525 1881 457 2029 405 7245 3510 2487 I 38 3070 6330 4654 3878 * 2652 6912 4702 2272 4666 6599 4875 5783 3821 3752 3874 6155 5739 * * 38 92 4289 6519 1787 494 * 0 7242 2596 2519 Q 39 4005 6512 3607 1487 * 4363 7162 * 3485 * * 4952 6356 3124 3329 4134 5187 * * * 39 41 * 5144 * * 1458 653 7230 0 3113 K 40 3885 5548 6526 4555 * 7429 3647 6302 4032 2830 5046 4930 6641 4296 2733 3430 3267 4402 * 4676 40 27 6335 7348 0 * 1310 745 7209 1000 3466 N 41 6317 * 2762 4032 * 1624 5671 * 4914 * 6446 3060 * 3947 5005 4078 3119 * * * 41 100 4723 5093 1275 769 707 1368 7242 2763 3013 L 42 3505 6858 4992 5840 5697 5155 5643 3242 4640 1105 6415 * 5052 5772 5579 5650 * 3732 * * 42 133 4035 5218 1753 508 1190 832 7214 3185 2746 T 43 4658 6350 1596 3238 6446 3529 6377 5519 4268 6317 * 5455 3917 3939 6576 4015 4351 5663 5661 * 43 150 4379 4301 2312 324 2094 385 7202 2975 2868 N 44 3583 6890 2423 4149 6694 1791 * 6429 3656 6657 * 3224 4155 7038 * 4754 * 4413 * 6512 44 130 5046 4168 1431 668 886 1123 7206 1998 3764 R 45 3927 * 3417 2788 6553 4284 6541 5637 3517 4538 * 3965 6515 4317 2622 3734 3650 5052 * * 45 20 6182 * 1000 1000 0 * 7211 1000 3887 I 46 4555 4681 * * 2963 * * 2322 * 3929 6033 * * * * * 6650 1030 * 6672 46 45 5556 6773 3846 104 * * 7261 1620 0 A 47 5032 * 4213 2416 6645 4510 3972 7150 4243 3314 5244 5989 * 4263 3218 3295 3533 4675 * 5566 47 22 7540 6681 1000 1000 * 0 7257 1000 1000 L 48 3648 5411 * * 6629 5336 * 2530 * 1719 5865 * 5491 * 4911 * 4406 1915 * * 48 0 * * * * 1000 1000 7242 0 1696 T 49 4379 6816 4780 3433 6628 5505 * 4164 3766 4516 5630 3882 * 3910 3481 4108 2859 3131 4507 6516 49 0 * * * * 0 * 7246 0 1000 T 50 3459 * * 3771 * 3738 4142 7263 2810 6680 * 6259 3874 3494 2678 3785 3121 6476 * 5618 50 0 * * * * * * 7261 0 0 T 51 4344 3544 6526 * 5513 5014 * 6393 * 5502 5106 * * 5726 5560 2431 1541 2664 6468 * 51 14 6653 * 2000 415 * * 7261 1000 0 G 52 4383 6869 5574 3954 3931 1330 6619 * 3877 6409 * 4277 6573 5808 3587 3316 5498 6989 * 6505 52 0 * * * * * * 7261 0 0 C 53 6192 196 * * * * 3487 * * * * * * * * 5385 * * * * 53 0 * * * * * * 7261 0 0 L 54 5622 * * 5863 3231 * 5702 4156 * 1495 2762 5540 * 3357 4895 5157 5619 3907 * 6522 54 0 * * * * * * 7261 0 0 G 55 6756 * 4734 5621 5988 491 * * 4053 * * 4618 * * 4526 4333 * * * 6407 55 0 * * * * * * 7261 0 0 P 56 3523 4872 * 4913 3848 3487 6071 3921 3799 3981 5358 3685 4284 3976 2689 5735 5390 4463 * 6512 56 0 * * * * * * 7261 0 0 C 57 * 163 * * * * 3659 * * * * * * * * * 6192 * * 6161 57 0 * * * * * * 7261 0 0 Q 58 3495 * 3181 4573 * 3328 4627 6344 3157 5705 6468 4327 6161 3644 3805 3121 3968 5564 5474 5246 58 27 5735 * 0 * * * 7261 1300 0 A 59 3650 5723 3855 3984 4174 5643 5514 5376 3272 3219 5116 3319 * 3971 3552 4135 5102 * 6230 4074 59 46 4988 * 849 1168 * * 7261 2075 0 G 60 1829 * 6742 3259 * 912 * * 5540 6661 * * 6550 * 6619 5568 * * * * 60 25 * 5862 * * * * 7261 0 0 A 61 4365 4493 * * * 5476 * * * * * 6341 347 * * * 6668 3717 * * 61 0 * * * * * 0 7250 0 1593 N 62 4304 5367 6642 * 6110 6805 * 4149 * 3299 4080 2129 * * 6508 4411 2993 1930 * * 62 0 * * * * 0 * 7250 0 1593 V 63 3133 6361 * * 5892 * * 2931 * 2242 3149 * * * * * 6782 1349 * * 63 0 * * * * * * 7261 0 0 L 64 3928 6631 5082 5636 5218 5354 6468 3392 3718 3026 4031 * * 5257 3376 3733 4214 2433 * 5643 64 0 * * * * * * 7261 0 0 I 65 6573 * 4477 * 5414 * 6683 1741 * 3411 6230 * * * * 6409 * 1126 6732 5297 65 256 4962 2939 3315 153 * * 7261 2066 0 Y 66 4808 * 4719 4304 4504 6205 3780 5057 4570 3304 4778 3587 5922 3673 5385 5328 * 4892 5292 2004 66 163 4148 4317 2256 339 * 0 7156 2771 4376 P 67 5300 * 4024 6434 * 3665 * 6403 6201 5019 * 4950 704 4506 6250 * 5179 5422 * 6351 67 101 4113 6664 2192 356 178 3109 7061 3175 4774 G 68 5040 * 1521 2220 * 2689 6409 * 6566 6436 * 6313 4528 5212 3674 6818 4847 6299 * * 68 42 * 5115 * * 0 * 7215 0 2268 A 69 4561 * 2942 3437 6350 1379 6572 * 3824 * 6576 3505 4594 7113 3844 5759 6469 * * 6565 69 97 3938 * 1605 575 * 0 7210 3477 1969 V 70 5703 5688 4472 3595 5302 6305 5776 3099 3641 5570 * 5493 * 5473 3648 6714 3699 1849 * 3821 70 90 4052 * 2910 206 0 * 7210 2901 1969 M 71 * * * * 3510 * * 3702 5469 2387 4784 * * 6453 5780 * 4194 3152 1603 4070 71 67 5822 5163 1362 711 * * 7238 1622 0 Y 72 * * * * 3499 * 3827 5667 * 6358 * 6744 * * * * * 5265 5355 416 72 30 6839 6429 1000 1000 1408 682 7205 1000 2168 S 73 4583 5267 5040 5066 * 1716 3248 6929 3630 6302 5867 6783 * 4914 4110 3401 3709 4858 * 4726 73 0 * * * * 0 * 7190 0 1938 W 74 6511 5709 3927 4930 5444 2622 2934 5851 3684 5699 * 3342 5129 4026 3048 4919 * 4339 7070 4598 74 0 * * * * * * 7238 0 0 V 75 4762 5538 * * * 6239 * 3967 * 2444 3534 * 6463 * 4668 6798 6507 933 * * 75 13 6774 * 0 * * * 7238 1000 0 E 76 6769 * 2511 4285 6365 6453 6348 * 2897 * * 3103 * 4932 4357 3692 1711 6239 * * 76 15 6640 * 0 * * * 7238 1000 0 P 77 3292 * 6068 3465 * * * 5353 4305 4214 6210 5538 1311 4138 4667 4292 4049 5802 * * 77 16 6494 * 0 * * * 7238 1000 0 A 78 2307 * 2340 1583 * 4924 * * 3840 6145 * 6478 6328 4292 5310 5039 5698 * * * 78 0 * * * * * * 7224 0 0 D 79 3981 * 1464 3765 * * 6902 5279 2856 5138 4856 3868 * 6521 3479 4604 4917 5488 * * 79 12 6916 * 0 * * * 7211 1000 0 A 80 2286 5615 * * 6427 * * 2458 * 3002 5503 * * * * 6485 5370 1327 * * 80 0 * * * * * * 7211 0 0 A 81 2919 * 2524 2913 * 6405 6115 5018 3388 3837 * 5615 2805 5595 3901 4604 5919 5666 * 6629 81 0 * * * * * * 7201 0 0 I 82 4213 * 4123 1815 * 4270 6733 5845 4376 4093 6461 6347 5003 4292 2345 3722 4619 * * * 82 12 6949 * 0 * * * 7201 1000 0 I 83 5609 * * * 5090 * * 955 * 1689 6397 * * * * * 6336 3325 * * 83 0 * * * * * * 7193 0 0 V 84 6613 * * * 3424 * * 1944 * 1647 5633 * * * 6528 * * 1861 * 6497 84 0 * * * * * * 7193 0 0 E 85 3554 * 3205 1549 * 6353 4944 * 3450 6445 5660 5147 * 2835 4461 5556 4349 * * 6263 85 15 6561 * 3585 126 * * 7164 1000 0 Q 86 4449 6635 5032 1639 * 5579 6452 * 3259 5681 * 6282 * 2868 3074 2763 6457 * * 6809 86 113 * 3733 * * * * 7104 0 0 H 87 6412 * * 6350 * * 741 5298 6258 4204 * 6366 * * 6334 6419 2963 5334 * 3384 87 27 * 5731 * * 204 2921 6918 0 3455 L 88 * * * * 2997 * * 1958 * 1508 5979 * * * 4592 * * 2369 * 6078 88 0 * * * * 1037 963 6907 0 1659 L 89 3703 6193 4857 4057 * 4978 6185 2800 3130 2067 5075 6001 6145 * 4365 6170 4825 3291 * 6178 89 23 5977 * 1585 585 * 0 6809 1000 1000 G 90 4617 * 4492 2900 5701 1915 6185 6076 2830 * * 3189 * 3626 3707 4506 5967 * * * 90 0 * * * * * 0 6785 0 1000 G 91 4832 * 2685 4840 * 693 * * 5825 5144 * 3772 * * 5962 * 5609 * * * 91 0 * * * * 0 * 6660 0 1000 E 92 3636 * * 2051 * 6186 4720 6243 2546 * * 5077 * 3774 2030 5017 4972 4974 * * 92 30 5582 * 0 * * * 6673 1000 0 P 93 3836 * * 4457 * * 5635 3329 * 4379 5917 * 1163 * 3417 5100 * 2933 * * 93 15 6626 * 3000 193 * * 6602 1000 0 Y 94 4820 * * * 5902 * * 2763 * 4109 4265 5693 * 5568 5608 5769 * 802 * 4721 94 27 * 5769 * * * * 6530 0 0 A 95 3212 * 3782 1885 5636 * * * 3072 * * 5588 2855 4641 4762 4450 3697 4299 * * 95 0 * * * * 0 * 6376 0 1000 D 96 4512 * 2224 1380 * 5689 * * * * * * * 6014 2026 4491 * 4918 * * 96 0 * * * * * * 6234 0 0 K 97 * * 6016 * 5419 5520 4398 5518 3405 952 5466 * 6199 * 5584 * * 5313 4824 2824 97 0 * * * * * * 6164 0 0 L 98 * * * 5059 * * * 3930 * 1393 3693 * * 3732 2250 * * 2638 * * 98 0 * * * * * * 5895 0 0 T 99 4727 4813 * * * * 4933 2144 4265 1254 * * * * * * 5213 2920 * 4741 99 0 * * * * * * 5530 0 0 P 100 4444 * * * * * * * 4543 * * * 524 4234 * 4454 4220 3987 * * 100 0 * * * * * * 5076 0 0 A 101 2117 * * 3443 * * * 3888 2359 4172 * * 4177 4093 3013 * 3036 * * * 101 0 * * * * * * 4672 0 0 E 102 * * 2130 904 * * * * * * * * 3748 * * 2619 * * * * 102 0 * * * * * * 4258 0 0 I 103 * * 2965 * * * * 2159 * 2931 * * * * * * * * 3105 1320 103 0 * * * * * * 3536 0 0 W 104 * * * * * * * * * * * * * * * * * * 0 * 104 0 * * 0 * * * 2739 0 0 //