HHsearch 1.5 NAME c4zv5B_ FAM FILE c4zv5B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4zv5B_.a3m DATE Sat Jan 30 08:42:38 2016 LENG 91 match states, 91 columns in multiple alignment FILT 34 out of 38 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.5 EVD 0.4072 0.1668 SEQ >ss_dssp CCCTTTTHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHCTHHHHHCCSSHHHHHHHHHHHHHHHHHHCGGGSCTTHHHHHHHHHHHHC >sa_dssp EEDEDEDCEECBDDBDECBDEDEDECEEDCACDABDBACECAEBBDEECCEDCECADDABECBEECCEEEDEEDCBECADDBBDCBCDCCE >ss_pred CCCCCCHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC >ss_conf 9875310348999999999662826029999999999999689721177635999999999999999730776467356669999999839 >Consensus gxxxsxxxxxfixxLkxlLkxrGvkVxxxxLxxfxxxIxxxcPWFpxxGtLxlxxWekvGxxLxxxxxxxgxxxipxxxxxxWxlIrdxLt >c4zv5B_ GVSGSKGQKLFVSVLQRLLSERGLHVKESSAIEFYQFLIKVSPWFPEEGGLNLQDWKRVGREMKRYAAEHGTDSIPKQAYPIWLQLREILT >UniRef50_UPI00017972D8(3-90:879) PREDICTED: similar to Gag-Pro-Pol-Env protein n=1 Tax=Equus caballus RepID=UPI00017972D8 E=4e-10 s/c=0.75 id=31% cov=91% ------QQKLYFKTLQRLLKVISVSVSLSELQKLLLAISTHCPWFPEDGTLDIELWERARKALKSRF-EHGLLKY-VHILTTWGTVRTEL- >UniRef50_Q7M6W5(3-77:576) Gag protein n=4 Tax=Mus musculus RepID=Q7M6W5_MOUSE E=8e-09 s/c=0.82 id=23% cov=76% ---------------QELFQARGVRLEVQLVKNFLGKIDSCCPWFKEEETLDCETWEKVGEALKITQTD-------NFTLGLWALVNDAI- >UniRef50_UPI0000F2B8BF(721-797:850) PREDICTED: similar to chromosome 20 open reading frame 12, n=1 Tax=Monodelphis domestica RepID=UPI0000F2B8BF E=1e-06 s/c=0.70 id=28% cov=82% -----------IRLLKSLTEKKGIKVSEAKIKALIKIIIRAYPDFPAAGVLNMQDWELIGDKMRQY--QKEGQKISQVSWNTWEIIR---- >UniRef50_Q8AGY0(36-95:1637) Gag polyprotein n=4 Tax=root RepID=Q8AGY0_9RETR E=6e-06 s/c=0.86 id=25% cov=67% ------------------------RLKNKELIGLLSYIWQQCPSYPEKGSLKISTWTKLGEYF------HAAPRAPVQILTSWRVVMECL- >UniRef50_Q9N174(2-91:708) Gag polyprotein n=1 Tax=Trichosurus vulpecula RepID=Q9N174_TRIVU E=1e-23 s/c=1.22 id=30% cov=99% GSPLSKE-QVFLKDLKQSFKERGIRIKKKDLLKFFIFIDKVCPWFIVNGpDIHPGKWQKVGRDLNERLKQEGPESVPINAFSLWTLINDII- >UniRef50_P62690(2-88:623) Nucleocapsid protein n=1 Tax=Homo sapiens RepID=GAK18_HUMAN E=2e-23 s/c=1.25 id=31% cov=97% GQTESKYAS-YLSFIKILLRRGGVRASTENLITLFQTIEQFCPWFPEQGTLDLKDWEKIGKELKQ--ANREGKIIPLTVWNDWAIIKATL- >UniRef50_A8BDN3(4-83:507) Gag protein n=1 Tax=Bos taurus RepID=A8BDN3_BOVIN E=3e-16 s/c=1.07 id=32% cov=82% ----------FISIMHHFLKQNAVNVSRDQLNDCYHILLEHNPWFPEEGTLDLDIWKRVKNNVLRAY--QQGVRIPPQWWLTWSLI----- >UniRef50_Q8BL68(2-86:159) Putative uncharacterized protein n=1 Tax=Mus musculus RepID=Q8BL68_MOUSE E=9e-15 s/c=0.96 id=28% cov=95% GNSTSG--QTVRQALKDLLKVKGIELKKEKLENFLKVVDQVAPWFSVSGHLTGLRWEKLGKDLK-FAEEQG--VLAKGVLPVWKLIQDCI- >UniRef50_UPI0000F2C7C6(328-399:436) PREDICTED: similar to MOG alpha-7Cj n=2 Tax=Monodelphis domestica RepID=UPI0000F2C7C6 E=5e-06 s/c=0.73 id=21% cov=77% --------------LRTVLGLHGVKVKRRQLKDFIRYVRRLAPWLPDKNRVTIEDWEWIGSKFK-------GNEEPQPLFALiYNVVKLCL- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2907 0 0 V 2 * * * * * * * * 3300 2860 * 1625 * 3021 * 3453 3365 3001 * * 2 0 * * * * * * 3059 0 0 S 3 * * * * * * * * 2716 * * * 3614 * * 974 1959 * * * 3 0 * * * * * * 3148 0 0 G 4 3241 * * 1992 * 1893 * * * 2202 * * * * * 3709 3648 * * * 4 0 * * * * * * 3446 0 0 S 5 * * * * * * 3780 * * * * * * * * 109 * * * * 5 0 * * * * * * 3486 0 0 K 6 * * * * * 3815 * * 854 * * 2786 * * * 2116 * * * * 6 106 * 3815 * * * * 3501 0 0 G 7 * * * 1196 * 3622 3589 * * * * 3484 * 2538 * 4183 * * * 3602 7 281 * 2499 * * * 0 3615 0 1000 Q 8 2437 * * * * * * * * * * 3657 * 2117 1689 2356 * * * * 8 0 * * * * 0 * 3485 0 1960 K 9 2656 * 4178 * * * 3969 * 2783 * * * * 1174 * 2900 * * * * 9 199 * 2956 * * * * 3791 0 0 L 10 * * * * * * * * * 951 3557 * 2814 * * 3710 3948 3126 * * 10 0 * * * * 0 * 3567 0 1571 F 11 * * * * 922 * * 4343 * 4351 * * * * * * * 3347 * 1860 11 0 * * * * * * 4218 0 0 V 12 * * * * 3360 * * 1023 * 2155 * * * * 4653 * * 2775 * * 12 0 * * * * * * 4385 0 0 S 13 * 3363 * 4232 * 3684 4167 * 2574 * * 4697 * 3837 4164 1900 3109 * * * 13 0 * * * * * * 4425 0 0 V 14 2162 * 4849 3816 3388 4624 4726 3153 * 3236 4167 * * * * * 4206 3039 * 4416 14 0 * * * * * * 4425 0 0 L 15 * * * * 4408 * * 2301 * 588 3565 * * * * * * * * * 15 0 * * * * * * 4561 0 0 Q 16 * * 5010 * 5247 4486 4241 * 1323 3471 * * * 2178 3209 5269 * * * * 16 0 * * * * * * 4645 0 0 R 17 * * 4992 2308 * 5067 3298 4280 * 4606 * * * 2809 3524 3129 2881 3989 * * 17 0 * * * * * * 4645 0 0 L 18 4755 * * * 4241 * * * * 889 3339 * * * 4837 3396 * 2824 * * 18 0 * * * * * * 4645 0 0 L 19 * * * * 3836 * * 4837 * 244 * * * * * * 4303 * * * 19 0 * * * * * * 4645 0 0 S 20 4358 * * 4303 * 3957 * * 784 * * 4229 * 4653 3387 3907 * * * * 20 0 * * * * * * 4645 0 0 E 21 4653 * * 2276 * 5373 3743 * 2616 4489 * * * 2391 3587 5081 * 2797 * * 21 0 * * * * * * 4645 0 0 R 22 * 4913 * * * 2546 4489 4424 3144 * * 4241 * * 965 * 5247 * * * 22 0 * * * * * * 4645 0 0 G 23 4241 * 4918 5038 * 506 * * 4978 * * 4837 * * 4842 3687 * * * * 23 0 * * * * * * 4645 0 0 L 24 3724 * * * * * * 1519 * 2575 * * * * * * * 1295 * * 24 0 * * * * * * 4645 0 0 H 25 * * * 3955 * * 4019 * 1117 * * 4250 * * 1979 4518 5349 * 4697 * 25 0 * * * * * * 4636 0 0 V 26 5221 * * * 5278 * * 2727 * 2849 * * * * * * 4521 704 * * 26 38 * 5278 * * * * 4636 0 0 K 27 3936 * * 3798 * * * * 1478 * * 5409 4673 5073 4875 1406 * * * * 27 0 * * * * * 0 4636 0 1000 E 28 * * * 2906 * * * 5462 1647 4490 4673 4701 4934 * 2655 * 2554 4612 * * 28 0 * * * * * 0 4636 0 1000 S 29 3838 * 4211 2940 * 4398 4997 * 1811 5409 * * * 4612 2832 2719 5297 * * * 29 0 * * * * * 0 4636 0 1000 S 30 5520 * 2607 3592 * * * 5012 2461 4612 * 3147 * 3040 4398 4631 2687 * * * 30 0 * * * * * 0 4636 0 1000 A 31 4631 * * * * * * 3309 * 460 4673 * * * * * 5073 3988 * * 31 0 * * * * * 0 4636 0 1000 I 32 * * * 2779 * * * 1978 2913 3189 * 4211 * 2714 * 3672 * 3770 * * 32 0 * * * * * 0 4636 0 1000 E 33 3660 * 3350 3781 * 3815 * * 1872 * * 2590 * * 4851 3198 3380 * * * 33 0 * * * * 0 * 4636 0 1000 F 34 * 4250 * * 662 * * * * 1664 * * * * * * * * * * 34 0 * * * * * * 4636 0 0 Y 35 * * * * 1355 * * 3083 * 1576 4960 * * * * * * 4964 * 3450 35 0 * * * * * * 4636 0 0 Q 36 * 5115 4061 4000 * 4654 4250 3177 3189 3913 * * * 2918 2822 2512 5582 * * * 36 0 * * * * * * 4636 0 0 F 37 4518 * * 2448 1477 * * 3025 4654 * * * * * * * 3829 3312 * 3638 37 0 * * * * * * 4636 0 0 L 38 * 3481 * * * * * 970 * 2959 * * * * * * * 1883 * * 38 0 * * * * * * 4648 0 0 I 39 * * 1545 2071 5085 * * 3549 5613 4261 * * * 3193 4580 4540 * * 4731 * 39 0 * * * * * * 4648 0 0 K 40 5113 * 5616 1813 * * * * 3000 5026 * * * 2475 2010 4671 4543 * * * 40 0 * * * * * * 4698 0 0 V 41 3695 3904 * * 4358 * 2203 4129 * 3790 * * * 2965 4308 * 4285 2115 * * 41 0 * * * * * * 4729 0 0 S 42 2198 765 * * * 4896 * * * * * 4363 * * * 3880 * * * 4519 42 0 * * * * * * 4729 0 0 P 43 * * 4636 * * * * * * * * * 94 * * 5463 * * * * 43 0 * * * * * * 4729 0 0 W 44 * * 4519 * * * * * * * * * * * * 4540 * * 131 * 44 0 * * * * * * 4729 0 0 F 45 * * * * 487 * * * * 2713 * * * * * * * * * 2903 45 0 * * * * * * 4729 0 0 P 46 3062 * * 5167 4636 * * 2853 4737 * * * 780 * * 5090 * 5346 * * 46 0 * * * * * * 4729 0 0 E 47 4519 3462 4124 1278 * * * 4896 * 3779 * * * 4285 5481 * 3775 2809 * * 47 0 * * * * * * 4729 0 0 E 48 4519 * 3578 1580 * * 4374 * 3055 * * 4271 * 3807 * 2020 * * * * 48 0 * * * * * * 4729 0 0 G 49 * * 5476 3686 * 217 * * * * * 4662 * * * * * * * * 49 113 3728 * 0 * * * 4729 1669 0 G 50 4896 * 5200 * * 3501 4136 * 4724 * 5476 5091 * * 4662 2096 1368 4519 * * 50 86 4103 * 0 * * * 4729 1385 0 L 51 * * * * * * * 2268 * 669 * * * * * * * 2612 * * 51 0 * * * * * * 4729 0 0 N 52 * * 1867 4929 * * 2904 * 4540 * * 2258 * * * 5550 2025 * * 4636 52 0 * * * * * * 4729 0 0 L 53 * 3814 * * * 5090 * 2685 * 1271 4519 * 2971 * * 5139 * 2943 * * 53 0 * * * * * * 4729 0 0 Q 54 3062 * 3815 1789 * 5200 * * 2488 3291 * * * 3579 4115 3820 * * * * 54 0 * * * * * * 4729 0 0 D 55 5092 * 2288 * * * * 3493 4040 3507 * * * * 4258 2760 1825 4435 * * 55 0 * * * * * * 4729 0 0 W 56 * * * * * * * * * * * * * * * * * * 0 * 56 0 * * * * * * 4729 0 0 K 57 * * 3343 1287 * 4161 * 4896 2691 * * 3673 * 5200 5448 * 3540 4929 * * 57 0 * * * * * * 4729 0 0 R 58 * * * 4929 * * * * 972 4519 4636 * * * 1582 * * * 4662 * 58 0 * * * * * * 4729 0 0 V 59 4317 * * * * * * 2602 * 2004 * * * * * * * 900 * * 59 0 * * * * * * 4729 0 0 G 60 * * * * * 264 * * 3644 * * * * * 3520 * * * * * 60 0 * * * * * * 4729 0 0 R 61 4724 * 2858 2936 * 4993 * * 1640 * 4636 4363 * * 2231 4662 * * * * 61 0 * * * * * * 4729 0 0 E 62 3512 4285 2134 2053 * * * * 3048 * * 4363 * 2477 * * * * * 4540 62 0 * * * * * * 4729 0 0 M 63 * * * * 2707 * * 4412 * 583 3579 * * * * * * 4363 * * 63 200 * 2946 * * * * 4729 0 0 K 64 * * 3053 * * * 4373 * 1379 4133 * 2794 * 3547 3021 4762 * * * * 64 323 4761 2609 1585 585 1866 463 4523 1000 2026 R 65 * * 2745 2579 5901 * * 4543 4532 4153 * * * 2979 2704 3074 2997 * * * 65 92 * 4017 * * 2686 244 4212 0 3017 Y 66 4095 * * 4606 2536 * 5158 4368 4380 3012 * * * 4737 3317 * 4539 * * 1743 66 112 * 3748 * * 974 1026 4220 0 2981 A 67 2414 * * * 4024 5021 3542 2208 * 3660 * * * 4755 * 5068 * 4823 * 2081 67 226 * 2784 * * 1641 558 4226 0 2440 A 68 1724 * * 4813 * * * 4037 3212 4183 * 5271 4301 * 3046 5126 2529 * 4709 * 68 75 * 4301 * * 1352 717 4133 0 3059 E 69 * * 4466 1398 * 5127 4612 * 4654 2850 * 4973 * 2561 * 4646 5408 3998 * * 69 172 * 3151 * * 684 1405 4296 0 2741 H 70 * * 4239 4819 3924 3869 1653 * 2531 * * * * 2105 4214 * * * * * 70 29 * 5647 * * 2234 345 4425 0 2804 G 71 4259 * 3714 2919 * 1040 * * 5268 * * * * 2723 * 3724 * * * * 71 155 * 3294 * * 1307 747 4500 0 2684 T 72 4302 * * * * 1281 * * 4446 4315 * 4650 1701 * * 4373 4435 * * * 72 52 * 4821 * * 1468 647 4490 0 2698 D 73 * * 3520 1860 * 3076 4735 4427 5074 4340 4695 2856 4345 3688 * * * 4264 * * 73 0 * * * * 1516 620 4525 0 2488 S 74 4689 * 5041 3893 4924 * * 4241 1537 * * * * * 2183 3742 4977 3898 * 4672 74 47 * 4953 * * 524 1714 4523 0 2202 I 75 4683 * * 4573 5464 * * 1290 * 2317 * * * * * * * 2053 * 4447 75 68 * 4447 * * * 0 4551 0 1533 P 76 4947 4794 * * * * * * 3258 * * * 472 * 4758 3853 * * * * 76 0 * * * * 578 1600 4472 0 2002 K 77 3342 * 5633 2952 4727 * * 4113 3849 3596 * 3562 3107 3519 * * 5556 2358 * * 77 0 * * * * * 0 4672 0 1000 Q 78 * * 2600 4502 4627 2369 4516 * * * * 3983 3917 2951 * 4629 2573 4443 * * 78 0 * * * * * 0 4672 0 1000 A 79 2495 * * * 4155 * * 2168 * 4599 * * * * * 3659 2087 3101 4281 5633 79 0 * * * * * 0 4672 0 1000 Y 80 * * * * 1456 * * 4887 3900 2502 5053 * * * 4934 * * * 1966 4663 80 0 * * * * 0 * 4672 0 1000 P 81 2508 * * * * 3724 * * * 4297 * 3033 2661 * * 1880 2779 * * * 81 0 * * * * * * 4698 0 0 I 82 * * 3563 * 4202 * * 3309 * 1609 * * * * * 4719 2482 3507 * 2973 82 60 4626 * 0 * * * 4698 1000 0 W 83 * * * * * * * * * * * * * * * * * * 184 3062 83 0 * * * * * * 4698 0 0 L 84 2694 * * 4464 * 3082 * * 2472 4701 * 2076 * * 3870 3559 3776 * * * 84 0 * * * * * * 4698 0 0 Q 85 * * * * * * * 2382 * 931 3423 * * 4701 * 5026 4543 3671 * * 85 0 * * * * * * 4698 0 0 L 86 * * * * * * * 857 * 4701 * * * * * * * 1288 * * 86 0 * * * * * * 4698 0 0 R 87 * 4684 * * * * 4966 * 2287 * 4664 3317 * 5070 850 * * * * * 87 0 * * * * * * 4576 0 0 E 88 2964 * 1163 3494 * * * * * 4432 * 4880 * * * 2250 4442 * * * 88 0 * * * * * * 4474 0 0 I 89 3474 1437 5177 4442 * * * 2529 * 3520 * * * * * * 5114 2492 * * 89 0 * * * * * * 4474 0 0 L 90 * * * * * * * 2610 * 258 * * * * * * * * * * 90 0 * * * * * * 4474 0 0 T 91 * * * * * * * * * * * * * * * * 0 * * * 91 0 * * 0 * * * 2562 0 0 //