HHsearch 1.5 NAME c4zjmA_ FAM FILE c4zjmA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4zjmA_.a3m DATE Sat May 16 08:15:07 2015 LENG 107 match states, 107 columns in multiple alignment FILT 28 out of 32 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.7 EVD 0.4307 -0.7573 SEQ >ss_dssp CCEETTEECCCCSCEEEEEETTEEEEEECSTTTCEEEEEESSSSCCCCEEEEEETTEEEEECTTSSSCEEEECCTTEEEEEEECBBCCSSCTTSCBCCEE EEEECCC >sa_dssp EBCBEEEEDECECECECEEDEDDBDBDBDDEECDBDBDACEDEEBEBDBCACECEEBEBCBEDEDEDDECEBEEEDECDADBCBBBECEEEEEEDCEDBC BDBDCDE >ss_pred CEEECCEECCCCCCEEEEEECCEEEEEECCCCCCEEEEECCCCCCEEEEEEEECCCEEEEEECCCCCCCEEEEECCEEEEEEEEEEECCCCCCCCCEEEE EEEEECC >ss_conf 9788876325666479996488899986788871799980787533788854217515788527777630575388499999889602587767501489 9998259 >Consensus xVxvxGxxxxxxxxVxCxqxxxxxxIxigxxxxGxxaxitxgxxpxxsVxixxxxGxtxxyxxgxxgxaxxxxdgxtytItGtAxGxdxxxPxxxtxxFe IxvtCxx >c4zjmA_ PVVIDGKDQNVTGSVVCTTAAGNVNIAIGGAATGIAAVLTDGNPPEVSVGLGNVNGVTLGYTSGTGQGNASATDGSHYKITGTATGVDMANPMSPVNSFE IEVTCST >UniRef50_C0VQD6(139-233:235) Putative uncharacterized protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VQD6_9CORY E=0.0006 s/c=0.48 id=27% cov=89% --------EKTSNGVTCYAENGYVFISRNNGKNGFSAQVTEGDSPELESLGATTDGGSLAYDASVGNGDVKVIkDGSTYRFVGNAY---LDSDNDGDSSF DFSATC-- >UniRef50_A1U9Y6(37-141:141) Putative uncharacterized protein n=3 Tax=Mycobacterium RepID=A1U9Y6_MYCSK E=0.0005 s/c=0.43 id=30% cov=97% -ITLDGQTRE-TRSVECSQIEWSLMIDAGAEPGRAHAYLRlGGQEPVVETVSIDDIGPVNGVAGGDLGKAEATLDDTIYTITGTVVGPDPANPGQsQTMP FEIKAPC-- >UniRef50_A0QGH0(35-140:140) LppE protein n=19 Tax=Mycobacterium RepID=A0QGH0_MYCA1 E=5e-18 s/c=0.87 id=29% cov=97% -LTIDGATH-TTRPTSCRQDQMYRTINIPDHDGGVEAVVLLSGYRVMPqwVKIRNVDGFTGSYWQGGVGDAHVDLTNDAYTITGSAYGINSANPNKVVTT dFKIVAEC-- >UniRef50_B1MJ22(53-159:160) Putative uncharacterized protein n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MJ22_MYCA9 E=5e-15 s/c=0.77 id=28% cov=87% -------------PVRCDAYEQRTFISVAKDPDARGLTLTGEPPAIETVNLGEVNGLKFMYYEllkKDGESATLTKDGKHYTVKGTVRGSDSQGADGMIK PFRVDVTC-- >UniRef50_C2AU19(37-143:143) Putative uncharacterized protein n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AU19_TSUPA E=1e-11 s/c=0.66 id=35% cov=94% -VEVDGKRQDAAEYVNagCSRTGDSITIGSGSVQTarGVGAMITDGNPPRVNTLFIATGSNVMTVTStpvGQIGSATASRAGNRYTITGEARAADLS--- --TKKFRVEVTCS- >UniRef50_A0QFM8(3-93:93) Putative uncharacterized protein n=2 Tax=Mycobacterium avium complex (MAC) RepID=A0QFM8_MYCA1 E=2e-05 s/c=0.55 id=29% cov=84% ----------------CIPMGSLTAVTIGDTAVGTKAFISnESALTAKSVNISDLGGFTGGYAEDLQGAADVALHGYTYTIRGRAEGFDTDNPSlKATDT FIIKVAC-- >UniRef50_A4TBS6(46-159:159) Putative uncharacterized protein n=1 Tax=Mycobacterium gilvum PYR-GCK RepID=A4TBS6_MYCGI E=0.0001 s/c=0.42 id=26% cov=98% -VLVNGIEVADQPRVRCDQVEWVWFIESVQDNPGFSAQIrTGDDVAALLVRIENLGGFTGSSWNAAETAPASAAAVEAdaevadgdFVITGTATGFYRDD PAEtATATFEIRTDC-- >UniRef50_Q1BEV6(84-191:191) Putative uncharacterized protein n=3 Tax=Mycobacterium RepID=Q1BEV6_MYCSS E=3e-13 s/c=0.71 id=26% cov=84% ----------------CERQQKYLSVRAGNSRGEITGVLDVGGARPVAkwVKIRDLGGFSGDFWEGGVGSIKTVRnDGDTTELGGTAYGVYTARPHElaQ TARFSFEVQC-- >UniRef50_A0R5U4(55-162:163) Lipoprotein LpqH n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R5U4_MYCS2 E=9e-10 s/c=0.60 id=32% cov=98% -VVLGGNELGPVTAIGCETSDGLTTITIESDVRTTVKVTEGEAPNVESVNIGDVwsDGPSVVYMSGLSEVPVVATrDGDTYTVAGIGMGADPADPSVPaD TPFDIAVTC-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 1000 0 0 V 2 * * * * * * * 4116 * 4013 4402 * * * * * * 263 * * 2 0 * * * * * * 4473 0 0 V 3 * * * 3683 * * * * 4334 2521 * * * * * 3430 1263 2405 * * 3 0 * * * * * * 4473 0 0 I 4 * * * * * * * 1336 * 2985 * * * * * * * 1067 * * 4 0 * * * * * * 4473 0 0 D 5 * * 1215 * * 2308 * * * * * 1444 * * * * * * * * 5 0 * * * * * * 4473 0 0 G 6 * * * * * 0 * * * * * * * * * * * * * * 6 0 * * * * * * 4473 0 0 K 7 2238 * * 4270 * * * 3717 2199 * * 3146 * 2414 * 3374 * 4461 * * 7 72 * 4367 * * * * 4473 0 0 D 8 4208 * 1469 2070 * * * * * * * * 3551 * 3620 * 3000 4188 * * 8 82 * 4178 * * 0 * 4428 0 1000 Q 9 * * * 3214 * * 4006 4402 4775 3134 * * * 1928 2702 * 4451 2556 * * 9 93 * 4006 * * 0 * 4526 0 1000 N 10 3024 * 2973 4038 * 2654 * * 2503 * * 3247 * 4365 4485 * 2690 * * * 10 241 * 2698 * * 0 * 4483 0 1000 V 11 2845 * 3557 4364 4152 2646 * * * 4190 * * 3764 * * * 2891 2011 * * 11 256 3232 4152 511 1746 0 * 4416 1593 1932 T 12 3065 * 4334 3499 * * 4274 * 4383 4443 * * 3409 3728 4465 2601 2725 3925 * * 12 0 * * * * 0 * 4568 0 1000 G 13 * * * 3748 * 2590 2517 4434 4376 * * 2728 3109 * 2646 * 3971 * * * 13 0 * * * * * * 4604 0 0 S 14 2966 * * * * 4180 * 4628 * 3536 * * 2154 * 2706 2629 4508 4642 * 3907 14 0 * * * * * * 4905 0 0 V 15 * * * * * * * 2936 * * * * * * * * 4184 296 * * 15 0 * * * * * * 4905 0 0 V 16 5035 * 4376 2860 * 4103 * * * * * 3907 * * 1823 4184 2656 3077 * 4508 16 100 3907 * 1000 1000 * * 4905 1101 0 C 17 * 0 * * * * * * * * * * * * * * * * * * 17 0 * * * * * * 4909 0 0 T 18 * * 3096 2913 * * * 4620 * * * * * * 3084 2058 2593 2884 * 4311 18 0 * * * * * * 4909 0 0 T 19 3237 * * 4664 * * * * 4079 * * 5480 4620 1271 3197 * 2260 * * * 19 0 * * * * * * 4909 0 0 A 20 2690 * 4413 4311 * * * 3620 * 3825 4620 4835 * 2778 * 4308 2969 2832 * 4166 20 0 * * * * * * 4909 0 0 A 21 4300 * 4308 1718 * 1733 * * * * * 2683 * 3409 4504 * * * * * 21 0 * * * * * * 4909 0 0 G 22 * * 4016 4585 * 1563 * * 4405 * 4413 * * 4166 * 4620 * * 1444 * 22 0 * * * * * * 4909 0 0 N 23 * * * * * * * 4664 3000 2886 4585 5430 * 5181 3448 2820 3999 3376 * 2213 23 0 * * * * * * 4909 0 0 V 24 * * * * 3925 * * 2802 * 3443 * * * * 2698 * 2407 2830 2214 * 24 0 * * * * * * 4909 0 0 N 25 4620 * * * 2258 * * * * 4638 3632 2541 * * * 3145 1865 * * 3835 25 0 * * * * * * 4909 0 0 I 26 * * * * * * * 450 * 4504 * * * * * * * 2160 * * 26 59 4638 * 0 * * * 4909 1000 0 A 27 2251 * 2682 2933 * 3484 * * 4504 * * 3496 * 4771 4405 3237 3456 * * * 27 0 * * * * * * 4909 0 0 I 28 3443 * * * 4638 * * 1310 * * 5181 * * * 4311 2456 3131 3469 * * 28 0 * * * * * * 4909 0 0 G 29 4166 * * 4308 * 687 * * * 3660 * 4311 4413 * * * 4835 4028 * * 29 88 4079 * 1000 1000 * * 4909 1085 0 G 30 3208 * 2395 3733 * 3255 * * 4166 * * 2919 * 4028 4835 2370 4504 * * * 30 0 * * * * * * 4909 0 0 A 31 4455 * 1790 3060 * 2244 4413 * 4835 * 3925 * * 4771 * 4405 4620 4016 * * 31 48 4946 * 1000 1000 * * 4909 1000 0 A 32 2687 * 2638 * 4798 * * 3925 4311 * 5181 4028 3316 3497 4405 4585 3125 4308 * * 32 0 * * * * * * 4909 0 0 T 33 * * 3360 * * 2487 * * * * * 3549 2470 3527 3592 3222 2828 4620 * * 33 43 5089 * 1000 1000 * * 4909 1000 0 G 34 3586 * * 4405 * 369 * * * * * * * * 4483 * 4308 * * * 34 58 4664 * 1000 1000 * * 4909 1000 0 I 35 3117 * * * 2172 * * 2311 * 3276 * * * * 4166 * 3456 2243 * * 35 0 * * * * * * 4909 0 0 A 36 3122 * * 4413 * 1993 4483 3925 3707 * * * * * 4771 2720 2636 4308 * * 36 0 * * * * * * 4909 0 0 A 37 769 * * * * 4405 * 3384 4308 4166 * * * * * * * 2609 * * 37 43 * 5091 * * * * 4909 0 0 V 38 4780 * * * 4601 4417 * * * 4755 3981 * * 2365 3595 4619 4131 1497 * 4434 38 0 * * * * * 0 4905 0 1000 L 39 * * * * * * * 2066 * 1502 4055 * * * * * 4291 1752 * * 39 291 2452 * 0 * * 0 4905 2141 1000 T 40 * * 2674 3353 * * * * 4820 4391 * * * * 4434 3419 936 * * * 40 132 3515 * 0 * * 0 4905 1669 1000 D 41 3595 * 2320 2948 * 1568 * * * 4391 * * 4417 3791 * * 4820 4378 * * 41 0 * * * * 0 * 4905 0 1000 G 42 * * 3354 2283 * 893 * * * * * 4798 * * * 3513 * * 4853 * 42 0 * * * * * * 4909 0 0 N 43 1604 * 1956 4585 * 3409 * * * 5091 * 2760 4166 4483 * * * * * * 43 0 * * * * * * 4909 0 0 P 44 4405 * * 3755 * * * 4504 * 4620 * * 2227 4798 4771 2354 3408 2547 * 4413 44 0 * * * * * * 4909 0 0 P 45 2670 * * * * * * * * * * 4308 980 * 3409 * 3724 3112 * * 45 107 3803 * 546 1667 * * 4909 1601 0 E 46 1956 * 5091 3765 * * * 3469 5181 * * * 3081 4015 4016 4585 * 2072 * * 46 0 * * * * * * 4909 0 0 V 47 5091 * * 2824 * * 3705 * 3043 2705 4413 * * * 4835 * 4853 1468 * * 47 381 2106 * 361 2175 * * 4909 2859 0 S 48 3604 * * 3016 * * * * * 3247 * 3346 4413 4664 * 1157 4166 * * * 48 143 3409 * 1000 1000 * * 4909 1608 0 V 49 4775 * * * * * * * * 3788 * * * * * 3665 3230 503 * * 49 43 5091 * 2000 415 * * 4909 1000 0 G 50 * * 4835 4638 * 2257 4798 * 3409 2829 * 2768 * 4504 2577 * 4585 4483 * * 50 0 * * * * * * 4909 0 0 L 51 * * * * 3368 3665 * 964 * 2081 5026 * * * * 4483 * * * * 51 45 * 5026 * * * * 4909 0 0 G 52 3448 * 4817 3990 * 1761 * 3175 * * 4720 4481 * 4784 2277 4605 4728 * * * 52 0 * * * * 0 * 4894 0 1000 N 53 3304 * 1953 4166 * 4835 * * * * * 1588 * * * * 3105 3310 * * 53 0 * * * * * * 4909 0 0 V 54 * * 4483 * * * * 2481 * 1593 * * * * * * 2721 1771 * * 54 75 4308 * 1000 1000 * * 4909 1000 0 N 55 4853 * 1548 4638 * 1467 * 4483 * * * 2829 * * * 4798 * * * * 55 0 * * * * * * 4909 0 0 G 56 * * * * * 147 * * * * * 4835 * * * 4016 * * * * 56 0 * * * * * * 4909 0 0 V 57 * * * * 1128 4311 * 4664 * 4166 * 3047 3392 4585 * * * 2847 * * 57 0 * * * * * * 4909 0 0 T 58 4079 * * * * * * * 4166 * * * 4585 * * 2442 1038 2536 * * 58 0 * * * * * * 4909 0 0 L 59 * * * * 4166 1128 * 3925 * 2452 4016 4483 * * * * * 3439 * 4664 59 0 * * * * * * 4909 0 0 G 60 2214 * 4405 * * 2336 * 4585 * 4853 2963 * * * * 2488 3239 4308 * * 60 0 * * * * * * 4909 0 0 Y 61 * * * * 1973 * * * * * * * * * * 4028 * 2593 4664 1063 61 0 * * * * * * 4909 0 0 T 62 2010 * 4311 * * 4504 * * * * 4308 * * * * 3156 2529 * 1912 4166 62 48 4946 * 0 * * * 4909 1000 0 S 63 3549 * 5181 1647 * 4483 * * 4664 * * 3053 4585 2970 4798 2994 4946 * * * 63 176 3122 * 2097 384 * * 4909 2159 0 G 64 3053 * 3062 * * 787 * * 4166 * * * 4946 * * 3441 * * * * 64 0 * * * * * * 4909 0 0 T 65 3493 * 2542 * * 2942 * 4504 * 3456 4079 3705 * 5089 * * 2642 2750 * * 65 40 5181 * 0 * * * 4909 1000 0 G 66 5070 * * 4988 * 1241 * 3330 * 4483 * * 3925 4620 * 3532 4504 2896 * * 66 42 5134 * 1585 585 * * 4909 1000 0 Q 67 5026 * * 3235 * 719 * * * * * 4311 * 3680 * 3925 4988 5070 * * 67 48 4946 * 0 * * * 4909 1000 0 G 68 2374 * 2655 3387 * 2961 * * 3279 * * 4664 * * * 2112 * 4308 * * 68 61 4585 * 0 * * * 4909 1000 0 N 69 931 * 4311 * * 4638 * 4405 * * * 3165 3015 * * 3986 * 4664 * * 69 0 * * * * * * 4909 0 0 A 70 2511 * 3233 2738 * 3893 4413 * 3036 * * * * 4504 * 4835 2717 3309 * * 70 0 * * * * * * 4909 0 0 S 71 1623 * * * * * * * 4311 3437 4798 3925 * * * 3549 3293 2039 * * 71 0 * * * * * * 4909 0 0 A 72 1750 * 4413 5070 * 4853 4771 * 5134 * * * * * * 2791 1814 3357 * * 72 45 5026 * 1585 585 * * 4909 1000 0 T 73 4988 * * * 3117 4835 * 2993 2605 2918 4798 * * * 3707 4189 2841 3491 * * 73 389 2081 * 0 * * * 4909 2898 0 D 74 3463 * 1119 * * 4853 4620 * * * * 3925 * * 3164 3675 3593 4835 * * 74 48 4946 * 0 * * * 4909 1000 0 G 75 * * 2467 4876 * 671 * * 4629 * * 3556 * * * * * 4991 * * 75 0 * * * * * * 4915 0 0 S 76 * * 2104 4991 * 2400 * * 3603 * * 2416 * * 4572 2759 4463 * * 4586 76 0 * * * * * * 4915 0 0 H 77 3760 * 5079 * * 4853 3646 4463 4061 * * * * * 3362 3330 1185 4629 * * 77 46 4991 * 3000 193 * * 4915 1000 0 Y 78 * * * * 2259 * * 4629 * 4876 * * * * * * 4395 * * 580 78 0 * * * * * * 4915 0 0 K 79 * * * 4395 * * * 4876 2942 6397 * * * 3916 4332 * 738 4035 * * 79 0 * * * * * * 4915 0 0 I 80 * * * * 4332 * * 712 * 3066 6397 * * * * * * 2262 * * 80 0 * * * * * * 4915 0 0 T 81 3459 * * * * 4395 * * 4138 * * * * * 4586 2953 885 3437 * * 81 0 * * * * * * 4915 0 0 G 82 * * * * * 53 * * * * * * * * 4788 * * * * * 82 0 * * * * * * 4915 0 0 T 83 * * * 2660 * * * 4353 4832 * * 3542 4572 * 4586 4205 905 * * * 83 0 * * * * * * 4915 0 0 A 84 302 * * * * 4353 * * * 4723 * * * * * * * 3291 * * 84 0 * * * * * * 4915 0 0 T 85 * * 2833 3723 * * * * 4629 * 4353 * * * 3085 3916 2161 2762 * 2841 85 139 * 3447 * * * * 4915 0 0 G 86 3912 * * * * 99 * * * * * * * * * * * * * * 86 0 * * * * 1030 970 4713 0 1610 V 87 2119 * * * 2619 * * 4464 * * * * 4397 * * 3243 4667 2026 4389 3717 87 0 * * * * * 0 4750 0 1000 D 88 * * 1037 * 3575 4474 * * 4317 * * 2612 * * * * * * * 2555 88 108 * 3788 * * 0 * 4750 0 1000 M 89 2850 * * * * * 4366 * * 2541 3084 * 3283 * 3854 3216 2038 * * * 89 0 * * * * 932 1072 4773 0 1099 A 90 1688 * 1568 * * 4736 * * * * * 4361 * 4090 * 2548 * 4777 * * 90 46 * 4997 * * 0 * 4872 0 1000 N 91 4788 * 3110 * * 4104 * * 2656 * * 1325 * * 4274 4288 2954 * * * 91 69 * 4415 * * * 0 4876 0 1000 P 92 4039 * 4238 * * 4588 * * * * * * 300 * * * 4946 * * * 92 137 4468 4465 0 * * 0 4805 1000 1101 M 93 3164 * 3976 * * 2181 4179 * * * 2656 2820 * 4529 * 2657 4411 * * * 93 69 4418 * 0 * * 0 4734 1000 1703 S 94 2472 * 4153 1747 * 3976 * * 3414 * * * * 2148 * 5200 * 4172 * * 94 283 2490 * 380 2110 * 0 4734 2291 1703 P 95 2275 * * * * 2944 * 4529 * * 3976 * 1711 2823 3996 * * 4411 * * 95 618 1522 * 137 3461 1796 490 4734 3325 1703 V 96 * * 3207 4492 * * 4613 3045 * * 4794 * * * * 4391 988 3359 * * 96 136 3470 * 428 1962 0 * 4785 1727 1636 N 97 1350 * 4527 4680 * * 5055 * 1894 * 4432 5408 * * * 4303 3241 * * * 97 62 4564 * 0 * * * 4876 1430 0 S 98 4746 * * 3776 * * * * 3228 * * * 1926 * 3376 2463 2045 * * * 98 65 4514 * 0 * * * 4876 1000 0 F 99 * * * * 63 * * * * * * * * * * * * * * 4548 99 0 * * * * * * 4876 0 0 E 100 * * 3316 1246 * * * 4527 3655 * * * * * 2110 3991 4039 * * * 100 0 * * * * * * 4876 0 0 I 101 * * * * 3303 * * 656 * 3612 * * * * * * * 2457 * * 101 0 * * * * * * 4876 0 0 E 102 4329 * 4124 1862 * * * 4454 2958 * * 5455 * 4751 3704 3508 3271 3118 * * 102 0 * * * * * * 4876 0 0 V 103 1984 * * * 4548 * * * * * * * * * * * 2709 858 * * 103 0 * * * * * * 4876 0 0 T 104 3490 * 3953 4514 * * * * * * * 3748 4432 4302 4802 4039 904 * * * 104 0 * * * * * * 4876 0 0 C 105 * 0 * * * * * * * * * * * * * * * * * * 105 0 * * * * * * 4876 0 0 S 106 * * * * * * * * * * * 2521 * * * 276 * * * * 106 0 * * * * * * 1998 0 0 T 107 * * * * * * * * * * * * * * * 1000 1000 * * * 107 0 * * 0 * * * 1132 0 0 //