HHsearch 1.5 NAME c4z9eC_ FAM FILE c4z9eC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4z9eC_.a3m DATE Sat Feb 27 08:16:23 2016 LENG 85 match states, 85 columns in multiple alignment FILT 48 out of 52 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.4 EVD 0.4498 0.9416 SEQ >ss_dssp CEEECCSSCHHHHHHHHHHHHHTTCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEEEECSSSEEEEEEEEEEEEC >sa_dssp EDBEBCEEECDDBAEDABDCBEEECEEACADBDDEBCECADDAACCACEEDBEEADCEDEEEEEDEDECEEEEDECDBBCBBABE >ss_pred CEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCEEEEEEEEEEC >ss_conf 9899817743799999999963799679999963502467789999998505881588997050576246785001389999969 >Consensus nxIxigxKpxxnYVxxaxxllxxgxxxVxiKaxGxaIskAVdvaeiikxRxxxxxxixxixIxsexxxxxxGxrxVSxIeIxLxk >c4z9eC_ NIIFVGKKPTMNYVLAVVTQFNNNANKIIIKARGKTISKAVDVAEITRHKFIPDAKYEEIRLDTETLQGERGSSNVSSIEITLSR >UniRef50_B3T7Q8(80-165:167) Putative uncharacterized protein n=2 Tax=environmental samples RepID=B3T7Q8_9ARCH E=9e-18 s/c=1.06 id=39% cov=100% DIIYIGKKPLMAYVTSTLIQL-SNISCVTIKARGMSIGRAVDVSQIISRKTENaGYSIGNIKIGSESLESQDGRmRNVSTIDIEVKR >UniRef50_D0MQP4(233-317:535) Aspartyl protease family A01B, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MQP4_PHYIN E=1e-05 s/c=0.60 id=29% cov=89% ---------VRSYISYANGLFAEKSErRVVLKAMGNAISKAVTVAEILKHRVanlhqvtrISSIETVDVYEPLEEgLDRIETTRHIPGISIQLS- >UniRef50_Q7XJ13(509-604:732) Chloroplast nucleoid DNA-binding protein-like protein n=30 Tax=Spermatophyta RepID=Q7XJ13_ORYSJ E=2e-19 s/c=1.01 id=27% cov=101% NEIRITTQGRMrNYITYATTLLQDkGSDEVVFKAMGRAINKTVMIAELIKRRivgLHQNTTTGSTDITDMWEPLEEGllpletTRHVSMITITLSK >UniRef50_A1RZM9(5-86:95) Nucleoid protein Alba n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZM9_THEPD E=6e-13 s/c=0.92 id=30% cov=98% -VLLVGEKPESAYTLELMTMLGKGAPRVVVRAVGRNISKAVYVTEGVRRLTGDKIAYGKIRIYSTEVGEVKEEKSVPVIEIEV-- >UniRef50_Q971T6(7-88:90) DNA/RNA-binding protein Alba 2 n=12 Tax=Sulfolobus RepID=ALBA2_SULTO E=2e-11 s/c=0.86 id=28% cov=96% NEILISRtKRVEDYVLDVIVMFNQGYDEVELKGVGNSIYKAVEVYNQLKDRLGDGIILEKADIGSEVKD----RRRISYISIKLKR >UniRef50_A9A2B8(22-103:104) Alba, DNA/RNA-binding protein n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A2B8_NITMS E=1e-07 s/c=0.70 id=38% cov=96% -IVYIGNDPVMQSALEVLSIL-GNKKKITIKSKGNSIPNAVAVANIITEKMLNgNSKVEKINLDTDAAAGIG--RMTSTIEIILLK >UniRef50_A7AMG5(31-107:169) Putative uncharacterized protein n=1 Tax=Babesia bovis RepID=A7AMG5_BABBO E=1e-05 s/c=0.66 id=18% cov=86% ------------YVNYARKLIDGGEPVVTLRGTGRAMSNVVETAEILRRAYKGMHQLTLLDTqdnlaSDQDAEGKDSRRPVCFLTIKLT- >UniRef50_A0E244(20-122:325) Chromosome undetermined scaffold_74, whole genome shotgun sequence n=5 Tax=Paramecium tetraurelia RepID=A0E244_PARTE E=1e-09 s/c=0.62 id=28% cov=101% NVIRVANKAqLSTQVRKALWLLQGTRKEeqppildtIYITAIENAISKAVIIAEVVRRRvagLYQINKIQSVQISEEYEPLEEGlvkvsvTKNLASLQIK LTK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * 2624 * * * 4582 * * * * 329 * * * * * * * * 1 0 * * * * * * 3368 0 0 I 2 * * * 2654 * * * 2096 * * * * * * * 4741 2242 1480 * * 2 0 * * * * * * 3880 0 0 I 3 * * * * * * * 574 * 3970 * * * * * * * 1919 * * 3 0 * * * * * * 3880 0 0 F 4 * * 4268 * 1908 * * * * 2284 * * * * 2450 * * 3566 * 2259 4 0 * * * * * * 3880 0 0 V 5 * * * * * * * 880 * * * * * * * * * 1131 * * 5 0 * * * * * * 3923 0 0 G 6 3913 * * * * 442 * * * * * * * * 4430 4635 3175 * * * 6 0 * * * * * * 3923 0 0 K 7 * * 4532 4054 * * * 4142 1437 * * 2017 * 5706 3986 3277 4715 * * * 7 53 4805 * 0 * * * 3974 1000 0 K 8 * * 4305 * * * * * 253 * * * * 3881 4566 * * * * * 8 0 * * * * * * 4033 0 0 P 9 4087 * * * * 3086 * * * * * * 343 * 4841 * * * * * 9 195 3582 4549 0 * * * 4055 1441 0 T 10 4820 * * 4304 * * * 2452 * 2224 * * * * 4210 * 3185 1502 * * 10 0 * * * * 0 * 4180 0 1000 M 11 * * 4754 3345 * * * 4136 * * 1137 * * * 3168 2681 3546 * * * 11 73 4335 * 0 * * * 4262 1103 0 N 12 3358 * 3156 3938 * * * * * * * 1133 5534 4607 * 2810 3965 * * * 12 0 * * * * * * 4354 0 0 Y 13 * * * * * * * * * * * * * 3788 * 4661 * * * 171 13 0 * * * * * * 4452 0 0 V 14 4661 * * * * * * 2139 * * * * * * * * 4646 528 * * 14 0 * * * * * * 4452 0 0 L 15 * * * * 4953 * * 5183 * 1592 3829 3389 * * 4013 2780 2295 4986 * * 15 0 * * * * * * 4452 0 0 A 16 1509 * 4209 2803 * * * * 4612 * * 4998 * * * 4220 * * * 1620 16 0 * * * * * * 4452 0 0 V 17 1162 * * * * 3796 * 4090 * 4646 * * * * * * 2453 2323 * * 17 0 * * * * * * 4452 0 0 V 18 5194 * * * * * * 2299 6128 1764 2672 5296 * * 4556 * 3539 2737 * * 18 0 * * * * * * 4490 0 0 T 19 4557 * * * * 5296 * 3576 3308 3672 5219 4232 * * 5597 2663 1647 4261 4688 * 19 0 * * * * * * 4490 0 0 Q 20 4137 * * * * * 5224 3914 * 1197 3455 * * 1941 * 4005 * * * * 20 0 * * * * * * 4490 0 0 F 21 * * * * 1334 * * 3618 * 997 5584 * * * * * * * * * 21 209 * 2892 * * * * 4490 0 0 N 22 4118 * 4418 5036 * 3735 * * * * * 1143 * 2056 4302 4436 * * * * 22 78 4252 * 0 * 0 * 4319 1598 2050 N 23 3597 * 3692 1578 * 2564 * * 3924 * * 3704 * 3796 5344 3370 * * * * 23 267 2564 * 672 1425 * * 4490 2303 0 N 24 * * 5198 * * 740 * 5731 4476 * * 3268 5170 5164 5975 3732 4071 * * * 24 49 4898 * 0 * * * 4494 1429 0 A 25 2316 * * 4558 * * 4192 3399 3917 4614 * 4197 5731 * 3642 2989 5591 2688 * 4478 25 0 * * * * * * 4494 0 0 N 26 * * 2164 3430 * * * * 1727 * * 3845 2246 5588 * 3742 7385 * * * 26 65 5305 5731 0 * * * 4494 1000 0 K 27 * 5620 4061 1416 * * * 4552 2828 * * 4996 * 5211 3704 3762 3385 4128 * * 27 57 4682 * 3000 193 0 * 4483 1000 1000 I 28 * * * * * * * 1292 * 5056 * * * * * * * 832 * * 28 0 * * * * * * 4492 0 0 I 29 5277 * * 3606 * * * 2414 3744 * * 4905 * * * 5954 2301 1560 * 4707 29 0 * * * * * * 4492 0 0 I 30 * * * * 4530 * * 1028 * 1374 * * * * * * * 3634 * * 30 0 * * * * * * 4492 0 0 K 31 4626 * * * * * * * 416 * * * * * 3410 5185 4707 4316 * * 31 0 * * * * * * 4492 0 0 A 32 517 * * * * 1930 * * * * * * * * * 4690 * * * * 32 0 * * * * * * 4492 0 0 R 33 * * * * * * * 3947 4690 * 2164 * * 5467 1228 5612 3592 3482 * 5023 33 0 * * * * * * 4492 0 0 G 34 * * * 4707 * 56 * * * * * * * * * * * * * * 34 39 5236 * 0 * * * 4492 1000 0 K 35 4223 * 5014 * * * * 5607 2302 4905 5745 2531 5056 3897 1541 5240 * * * * 35 0 * * * * * * 4492 0 0 T 36 906 * * 5023 5014 * * * * * 5236 3225 * * 4033 2616 5864 * * 5070 36 0 * * * * * * 4492 0 0 I 37 * * * * * * * 118 * * 4153 * * * * * * 5467 * * 37 0 * * * * * * 4492 0 0 S 38 * 5930 5023 * * 3667 5185 5493 * * * 3402 4690 6206 * 749 4033 * * 5533 38 0 * * * * * * 4492 0 0 K 39 * * * * * * * * 990 * * 2849 * 4033 1888 * 5240 * * * 39 0 * * * * * * 4492 0 0 A 40 357 * * * * * * * * * * * * * * 5101 2902 4153 * * 40 0 * * * * * * 4492 0 0 V 41 * * * * * * * 3057 * * * * * * * * * 185 * * 41 0 * * * * * * 4492 0 0 D 42 3807 * 1137 3684 5236 * * 4707 * * 4680 4383 * * * 4642 2871 5070 * 4723 42 0 * * * * * * 4492 0 0 V 43 * * * * * * * 2274 * 4139 * * * * * * 2339 892 * * 43 0 * * * * * * 4492 0 0 A 44 825 * * 5493 5070 * * * * * * * * * * 3085 4723 3444 * 2879 44 0 * * * * * * 4492 0 0 E 45 * * * 667 * * * * * * * 2527 * 2841 * * * 5262 5014 * 45 0 * * * * * * 4492 0 0 I 46 4223 * * * * 4270 * 1120 * 3843 2904 * * 5533 5070 * 5612 2648 * * 46 0 * * * * * * 4492 0 0 T 47 5277 * * * * * * 1619 * 1489 * * * * * * 3881 2155 * * 47 0 * * * * * * 4492 0 0 R 48 4159 * * * * * * * 1256 5277 5240 * * * 1624 5745 4690 3455 * * 48 31 * 5550 * * * * 4492 0 0 H 49 * * 3635 3296 * * 3820 * 3954 4275 * 2218 * * 1376 5036 * * * * 49 22 6074 * 1585 585 0 * 4484 1000 1000 K 50 4381 * * * * * * * 1986 4168 * * * * 635 * * * * * 50 350 2350 5717 1585 585 * * 4499 2273 0 F 51 * * * * 2029 * * 6069 * 1508 2848 * * * 5493 * 3700 3698 * 3772 51 121 3635 * 2568 266 0 * 4488 1849 1000 I 52 * * 5586 3970 5345 2581 2617 3612 4381 2190 4393 5676 * 5449 * * 5717 5176 * 3735 52 0 * * * * * * 4499 0 0 P 53 5255 * 3136 3866 * 3467 * * 4498 * 6014 2981 2855 2071 * 3283 4812 * * * 53 176 3123 * 0 * * * 4499 2023 0 D 54 * * 2682 4713 * 2310 * 2916 4721 3991 4381 2663 * * * 2887 5058 * * * 54 105 3830 * 0 * * * 4499 1756 0 A 55 4774 * * * * * 3467 2173 * 3338 * 4702 * * * 4622 2416 2239 * 3753 55 0 * * * * * * 4499 0 0 K 56 3946 * 5255 1924 * 4641 * 5511 2323 * * 5949 * 2855 4497 3532 5112 3845 * * 56 0 * * * * * * 4499 0 0 Y 57 * 5199 * * * * * 1354 5255 2281 5267 * * * * * 3657 2749 * 3388 57 21 6082 * 1585 585 * * 4499 1000 0 E 58 * * 5108 2511 * 2435 * 5267 3508 * * * * 4047 5736 2774 3318 2547 * * 58 59 4641 * 1000 1000 * * 4499 1373 0 E 59 4671 * 1850 3400 * * * * 2904 4381 * 3034 * * 4642 2195 5238 * * * 59 0 * * * * * * 4499 0 0 I 60 4714 * * * * * * 1153 * 3784 * * * 6191 * * 3417 1590 * * 60 40 5176 * 1000 1000 * * 4499 1000 0 R 61 * * 2317 2742 5255 4350 * * 2919 * * 4100 * 3891 2821 3752 5501 5199 * 4275 61 0 * * * * * * 4499 0 0 L 62 * * * 4275 * * * 508 * 2970 * * * * * * 3339 5736 * * 62 102 4381 5610 2322 322 * * 4499 1000 0 D 63 * 5558 3385 6172 * 1607 * 5089 * 5196 * 5914 4240 * * 2390 2828 5221 * 4155 63 0 * * * * 0 * 4486 0 1000 T 64 * * 2327 4702 * * 5176 * * 5282 * * * 5610 * 1385 1924 5267 * 5949 64 0 * * * * * * 4499 0 0 E 65 * * 2675 938 * * * * * * 5077 * * 2898 * * 3448 3920 * * 65 33 * 5449 * * * * 4499 0 0 T 66 4602 * 4301 1821 4963 * * 5487 4083 * 5244 * * * 4931 2891 4656 4557 2957 3225 66 78 4250 * 0 * * 0 4497 1344 1000 L 67 3444 * * 2463 * * * 3778 4171 1575 5222 * * * * 5032 * 2495 * 5161 67 0 * * * * * 0 4497 0 1000 Q 68 3615 * 2526 2778 * 4679 * 4426 4718 * * * 2149 4446 3393 5185 4639 4601 * * 68 82 * 4171 * * * 0 4497 0 1000 G 69 5077 * 4191 4597 * 1900 * 5852 4565 2654 * 5430 * * 3550 2278 3768 * * * 69 169 * 3181 * * 1508 625 4428 0 1618 E 70 5679 * 5129 1368 * * * 3194 2931 * * 3745 * 2512 * * * 3753 * * 70 30 * 5600 * * * 0 4256 0 2197 R 71 * * 1624 1611 * 3604 * * 3590 * * 5126 * 6172 4167 * 3564 * * * 71 71 * 4379 * * 2131 374 4260 0 2467 G 72 * * * 4332 * 323 * * * * * 3974 * * * 4158 4999 * * * 72 616 1525 * 2197 355 1120 889 4148 2948 2549 S 73 5462 * 5923 4118 * 4892 * * 1977 * * * * * 1700 3640 2135 * * * 73 230 2761 * 1186 835 0 * 4324 2430 1910 S 74 * * * 4309 * * * * 2341 * * * * * 658 4220 3948 * * * 74 201 2946 * 0 * * * 4486 2111 0 N 75 * * 5336 * 5237 * 2567 5028 3478 5411 3779 1667 3641 6051 3761 4710 4603 * * * 75 41 5170 * 2585 263 * * 4486 1000 0 V 76 * * * * * * * 3762 5028 4637 * * * * 4984 5221 4096 437 * * 76 0 * * * * * * 4486 0 0 S 77 2987 4372 * * * * * * * * * * 3074 * * 501 * * * * 77 0 * * * * * * 4486 0 0 S 78 3911 5237 * * 2948 5242 * * 4609 * 2948 * * * * 2966 2199 3532 * 2754 78 0 * * * * * * 4486 0 0 I 79 * * * * * * * 313 * 3058 4384 * * * * * * 5196 * * 79 0 * * * * * * 4486 0 0 E 80 4070 * 5711 1105 * * * * 3553 4036 * * * 4637 * 3252 3051 4490 * * 80 0 * * * * * * 4486 0 0 I 81 * * * * 4984 * * 94 * 4984 * * * * * * * * * * 81 0 * * * * * * 4486 0 0 T 82 * * 4003 2525 5093 * * 3215 2474 5170 5914 * * 4391 3978 5666 2415 3570 * * 82 0 * * * * * * 4486 0 0 L 83 * * * * * * * 3275 * 556 4280 * * * * * * 2600 * * 83 0 * * * * * * 4486 0 0 S 84 4812 * * 4371 * * * * 2360 4503 * * * * 2756 1522 2467 * * * 84 0 * * * * * * 4371 0 0 R 85 * * * * * * * * 1003 * * * * 3468 1284 * * * * * 85 0 * * 0 * * * 3979 0 0 //