HHsearch 1.5 NAME c4yiiA_ FAM FILE c4yiiA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4yiiA_.a3m DATE Sat Apr 11 08:15:32 2015 LENG 72 match states, 72 columns in multiple alignment FILT 59 out of 63 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4174 0.5926 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHTTSSTTCCCCCHHHHHHHHHHHHHTTSSEEETTEEECC >sa_dssp EEDBCEDBBEDADDBAEEDCCACCEDACDCADDDACEBEDEBDBDDEEADDCADCBCCEEDADDDEDCBCDE >ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEECC >ss_conf 956899999999999818777889999999989842789988889899999999998529889978876168 >Consensus keeexxvywxyIxgMLtNxgslplxRIhxmLkmfvxxxxxxxxxtxxeLxxfLxxxVxexkLxxxgGxYkLp >c4yiiA_ KEEELLLFWTYIQAMLTNLESLSLDRIYNMLRMFVVTGPALAEIDLQELQGYLQKKVRDQQLVYSAGVYRLP >UniRef50_B7G3T5(693-764:767) Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G3T5_PHATR E=1e-13 s/c=1.08 id=33% cov=100% QDQEMDVFLSYVVGMLTNLGQLPLKTIHNNLKTFVTGSDVRYDKTPQQLSAFLQNLCRQERLECGpDGMYKL- >UniRef50_P34514(654-723:731) Anaphase-promoting complex subunit 2 n=3 Tax=Caenorhabditis RepID=APC2_CAEEL E=1e-06 s/c=0.77 id=28% cov=94% --DALEQYWGYTRNFIANHapnGEVKAERMHRVYRMF--GSPTSAGPTLDHVSAFLQRKVALGLLTCINGSYRI- >UniRef50_B2AUE1(1055-1124:1131) Predicted CDS Pa_1_18830 n=1 Tax=Podospora anserina RepID=B2AUE1_PODAN E=2e-17 s/c=1.29 id=37% cov=94% -KEKREVYWKYIQGMLTNSSvTMPINQIAMMMGVFVIGGFSW---SHEELQSFLGEKVEEGALEvVSGGKYKL- >UniRef50_D2V3C9(529-599:601) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V3C9_NAEGR E=1e-17 s/c=1.28 id=32% cov=100% QEEELRVYQDIIINMIENFDSMPLAKIHNMLAMFALDPLPPFDKSLSELSSFLNILVKEEVLECDGGEYKI- >UniRef50_A3LQ64(757-828:830) Predicted protein n=1 Tax=Pichia stipitis RepID=A3LQ64_PICST E=2e-14 s/c=1.12 id=29% cov=100% KFKELEVLWPYLKSMLENISYLKFERVKTLLKLTVPKDkFDFGTIDDSKLEDYLDWLVDEEKLEITQQSYKL- >UniRef50_Q6C6Z8(643-710:712) YALI0E04983p n=1 Tax=Yarrowia lipolytica RepID=Q6C6Z8_YARLI E=2e-18 s/c=1.37 id=30% cov=96% --ESIRQYWSYIHAMLTNRGSLPVIQMHSFLKMLVPKETP-YTATQDELKQFLQAMVDEEKLDVVGAKFKL- >UniRef50_Q12440(775-845:853) Anaphase-promoting complex subunit 2 n=6 Tax=Saccharomyces cerevisiae RepID=APC2_YEAST E=6e-14 s/c=1.11 id=32% cov=99% -ELTLQRSLPFIEGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKYiANGSYEI- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 826 * * * * 2184 2212 * * * * * 1 0 * * * * * * 3147 0 0 E 2 * * 4345 518 3724 * * * 3853 * * * * 3219 * * * * * * 2 0 * * * * * * 3649 0 0 E 3 * * 2880 846 * * * * 2501 4748 * * * 3693 5904 * * * * * 3 0 * * * * * * 4129 0 0 E 4 3574 * 4972 992 * * * * 3011 * * 5454 * 3294 5319 4345 4099 * * * 4 0 * * * * * * 4268 0 0 L 5 5517 * * * 5060 * * 3425 4085 1564 1611 * * 4119 3776 * * * * * 5 0 * * * * * * 4347 0 0 L 6 4389 * 3955 2674 * * 4507 * 2614 5548 5678 4091 * 2319 2811 * 3621 * * * 6 73 4345 * 0 * * * 4375 1401 0 L 7 * * * * * * * 3112 4583 3143 3963 * * 3300 5105 * 5901 949 * * 7 0 * * * * * * 4370 0 0 F 8 * 5021 * * 1980 * * 4396 * 3917 * * * * * 5105 * 4560 * 914 8 0 * * * * * * 4370 0 0 W 9 * * * 2390 * * * * 5872 3837 * * * 5117 * * 5223 * 585 * 9 0 * * * * * * 4385 0 0 T 10 4520 * 5182 * 5288 4638 * 4792 3579 * * * 2537 2170 6376 1864 4403 6090 * * 10 0 * * * * * * 4432 0 0 Y 11 * * * * 1341 * * 5174 * * * * * * * * * * * 792 11 0 * * * * * * 4424 0 0 I 12 * * * * * * * 445 * 4041 * * * * * * 3763 2932 * * 12 0 * * * * * * 4394 0 0 Q 13 * * * 3657 6423 * 5680 2975 2452 4981 5028 * * 3278 4683 * 4561 1587 * * 13 0 * * * * * * 4394 0 0 A 14 3614 * 5111 * * 521 * * * * * 3930 * * * 3532 4628 * * * 14 0 * * * * * * 4394 0 0 M 15 * * * * 3763 * * 3849 * * 223 * * * * * * * * * 15 0 * * * * * * 4394 0 0 L 16 * * * * * * * 3317 * 195 * * * * * * * 5253 * * 16 0 * * * * * * 4394 0 0 T 17 3763 * * 4031 * * * 4431 5304 5111 6011 * * 4628 7129 4611 598 * * * 17 38 5253 * 0 * * * 4394 1000 0 N 18 * * * * * * * * * * * 36 * * * 5358 * * * * 18 73 4339 * 0 * * * 4394 1357 0 L 19 3531 * * * 2382 * 4683 4339 * 1360 * * * 2662 5680 4641 * * * 5253 19 57 4683 * 1585 585 * * 4394 1000 0 E 20 4852 * 3217 3958 * 965 * * 5509 * * * 3490 5304 * 3258 4628 * * * 20 78 4242 * 0 * * * 4394 1435 0 S 21 2656 * * 4683 * 5253 * * * * * 4605 3799 4660 * 1164 2808 * * 4857 21 25 5862 * 0 * * * 4394 1000 0 L 22 * * * * * * * 4628 * 1053 1441 * * * * 5978 5657 3763 * * 22 0 * * * * * * 4394 0 0 S 23 3965 * * 4340 * 5862 * * 2325 * * 3935 998 * * 3269 * * * * 23 0 * * * * * * 4394 0 0 L 24 3200 * * * 3738 * * 3137 * 711 * * 6245 * * * 5326 4222 * * 24 0 * * * * * * 4394 0 0 D 25 3405 * 1892 1595 * 4772 5235 5680 4631 * * 4638 4906 3495 * 5657 * * * * 25 0 * * * * * * 4394 0 0 R 26 * * * 5358 * * * * 3083 * * * * 2655 564 * 5476 * * * 26 0 * * * * * * 4394 0 0 I 27 * * * * * * * 504 * 3475 2551 * * * * * * 4857 * * 27 0 * * * * * * 4394 0 0 Y 28 3229 5485 * * * * 778 4124 3738 5241 * 5253 * 4982 * 5185 * 5333 * 5709 28 0 * * * * * * 4394 0 0 N 29 5111 * * * * * 5253 * 5304 * 2043 2390 * 3700 4683 2290 2658 7129 * * 29 0 * * * * * * 4394 0 0 M 30 * * * * 3297 * * 4080 * 3267 679 5476 * * * 5485 5215 4683 * * 30 0 * * * * * * 4394 0 0 L 31 * * * * 4847 * * * * 353 2802 * * * * * * * * 4683 31 24 * 5898 * * * * 4394 0 0 R 32 5216 * * * * 5426 * * 750 * * 4623 * 5098 2297 4978 4321 * * * 32 46 * 4992 * * * 0 4379 0 1000 M 33 * * * * 4918 * * 3460 * 2611 828 * * * * 4419 4409 4179 * * 33 0 * * * * * 0 4377 0 1472 F 34 3042 * * * 825 * * * * 3135 3372 * * * * * 3638 5417 * * 34 109 * 3779 * * 1673 543 4377 0 1472 V 35 1851 4806 * * * * * 3088 5723 * 4575 5438 * * * * 4750 1157 * * 35 129 * 3548 * * 1169 849 4317 0 2236 V 36 3905 * * * 5817 * * 3707 * 3718 4824 * 1539 4001 5148 3572 3437 3104 * * 36 64 * 4519 * * 2301 327 4117 0 2540 T 37 3748 * 3250 3640 * 1871 4962 * 2273 * 5762 5117 5604 3408 5958 5210 5455 * * * 37 59 * 4638 * * 911 1095 4234 0 2736 G 38 * * 2163 3568 * 1599 * * * * 5748 * 3176 * * 2344 * 4788 * * 38 116 4782 4622 0 * 1319 739 4295 1000 2344 P 39 3692 6481 4515 5928 2125 6022 * * 4441 4375 * 4901 1898 * * 5008 2747 * 5034 * 39 121 4441 4853 0 * 1235 798 4309 1000 2295 A 40 5539 * 4742 * * 2481 4363 5577 * * * 3513 1588 5153 5230 3011 3839 5406 * * 40 245 * 2681 * * 1279 767 4299 0 1844 L 41 4549 * * * 2740 2343 * 4758 * 4237 * 5541 4039 4689 4178 3636 * 4571 3230 3119 41 284 * 2484 * * 276 2521 4408 0 2760 A 42 3202 * * * 3115 2861 4709 * * 4875 5036 5060 * * * 3398 5648 4033 * 1601 42 15 * 6605 * * 1637 560 4406 0 2381 E 43 5596 * 2063 2704 * 3390 4692 * * * 5668 3559 3565 5159 4377 4964 2686 * * * 43 81 * 4203 * * 2533 274 4414 0 1880 I 44 3248 3719 * * 2809 * * 2888 2454 5325 * * 3647 * 3614 5405 5706 3338 5038 * 44 54 * 4771 * * 563 1630 4381 0 1979 D 45 * * 4167 5239 * 5400 * * * * * 3243 * 5886 * 1492 1265 * * * 45 25 * 5886 * * 2440 294 4287 0 1756 L 46 * * 4800 3975 * * 6013 3338 6170 1708 * 2666 3010 3498 5924 4012 * 5838 * * 46 0 * * * * 294 2438 4274 0 2035 Q 47 5150 * 2935 1503 * * 5492 * 4058 * * * 5263 2747 5471 2821 3899 * * * 47 0 * * * * 0 * 4363 0 1000 E 48 * * 4128 1070 * 5328 4674 * 4857 4622 * * * 1611 * * * * * * 48 0 * * * * * * 4393 0 0 L 49 * * * * * * * * * 201 * * * * * * * 2942 * * 49 0 * * * * * * 4393 0 0 Q 50 5872 * * 2440 * 4044 * * 2440 5858 * * * 2263 2470 3146 * 4842 * * 50 0 * * * * * * 4393 0 0 G 51 2307 * 3730 2130 * 3513 6298 * * 4005 5485 6148 * 3878 5111 3346 4981 3875 * * 51 0 * * * * * * 4393 0 0 Y 52 * * * * 575 * * 4653 * 5325 * * * * * * * 4605 5858 2281 52 0 * * * * * * 4393 0 0 L 53 * * * * * * * * * 81 4197 * * * * * * * * * 53 0 * * * * * * 4393 0 0 Q 54 2645 6063 2180 4981 * 2946 4730 * * 5885 * 3369 * 2285 * 3802 6090 * * * 54 0 * * * * * * 4393 0 0 K 55 3854 * * 2449 * 3500 * 5235 2978 5201 * 5484 * 3446 2834 3215 4163 5247 4857 * 55 0 * * * * * * 4393 0 0 K 56 4981 5657 * * * * * * 1332 1297 2792 * * * * * * * * * 56 0 * * * * * * 4393 0 0 V 57 5217 4653 * 5155 * * * 2867 * * 6404 * * * 4978 * * 465 * * 57 0 * * * * * * 4382 0 0 R 58 2152 * 3190 2574 * 6080 * * 2925 * * 3968 * 4374 2547 3882 * * * * 58 0 * * * * * * 4382 0 0 D 59 * * 3319 812 * 4651 * * 4510 3736 * 5437 * 3620 5243 6108 5249 * * * 59 0 * * * * * * 4382 0 0 Q 60 * * 4462 1905 * 1249 3671 * * * * 3780 * 4155 * 4077 * * * * 60 0 * * * * * * 4382 0 0 Q 61 5435 * * 3630 * * * * 1268 2670 * * * 3212 3121 * * 3311 * * 61 0 * * * * * * 4382 0 0 L 62 * * * * * * * 3986 * 337 4083 * * * * * * 3536 * * 62 75 4303 * 0 * * * 4382 1838 0 V 63 3804 * 5647 1275 * 6234 * 4072 5217 4723 * 4978 * * * 3635 3689 2573 * * 63 109 3776 * 0 * * * 4382 1647 0 Y 64 5095 2384 * * 2582 * 5478 3895 4432 2836 5092 * * * * * * 2331 * 3211 64 155 3293 * 0 * * * 4382 2354 0 S 65 4717 * 3770 5141 * 5470 * 4656 4978 * * 3549 * 4608 4997 1979 3019 2110 * * 65 86 4108 * 0 * * * 4382 1708 0 A 66 5704 * 3282 * * 849 * * * * * 1867 * 4851 * 6143 * * * * 66 0 * * * * * * 4382 0 0 G 67 5647 * 3370 * * 356 * * * * * 4809 * 4851 * 5876 6080 * * * 67 0 * * * * * * 4382 0 0 V 68 3957 * 5465 4297 * * * * 2388 3632 3062 3416 * 4152 4534 2547 5735 3512 * * 68 0 * * * * * * 4275 0 0 Y 69 * * * * 3241 * * * * * * * * * * * * * 4940 215 69 0 * * * * * * 4275 0 0 R 70 5447 * * 5128 5679 * * * 716 6125 * * * 4145 2286 4496 * * * * 70 0 * * * * * * 4271 0 0 L 71 * * * * * * * 2044 * 401 * * * * * * * * * * 71 0 * * * * * * 4239 0 0 P 72 * * * * * * * * * * * * 0 * * * * * * * 72 0 * * 0 * * * 2956 0 0 //