HHsearch 1.5
NAME  c4yi0A_
FAM   
FILE  c4yi0A_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c4yi0A_.a3m 
DATE  Sat Jan 16 08:25:26 2016
LENG  27 match states, 27 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.1 
EVD   0.5652  5.1503 
SEQ
>ss_dssp
CCCCCCCCTTCSSTTSSCCSCCCCCCC
>sa_dssp
EEEEEEEDDECECCEEEEEEEEEEEEE
>ss_pred
CCHHHHHHHHHHEEECCCHHHHHHCCC
>ss_conf
931242433211020350113343039
>Consensus
xxkkrtvxeedqxxldgqenkrrrhds
>c4yi0A_
EKKKRTVAEEDQLHLDGQENKRRRHDS
>UniRef50_Q96HA1(319-345:1249) Nuclear envelope pore membrane protein POM 121 n=27 Tax=Amniota RepID=P121A_HUMAN  E=4e-09 s/c=2.33 id=79% cov=104%
KEKKRTVEEEDQIFLDGQENKRRRHDS
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
E 1    *	*	*	1000	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1137	0	0	

K 2    *	*	*	1000	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1137	0	0	

K 3    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1137	0	0	

K 4    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1137	0	0	

R 5    *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	5
       0	*	*	*	*	*	*	1137	0	0	

T 6    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	6
       0	*	*	*	*	*	*	1137	0	0	

V 7    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	7
       0	*	*	*	*	*	*	1137	0	0	

A 8    1000	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1137	0	0	

E 9    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1137	0	0	

E 10   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1137	0	0	

D 11   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1137	0	0	

Q 12   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1137	0	0	

L 13   *	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1137	0	0	

H 14   *	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1137	0	0	

L 15   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1137	0	0	

D 16   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1137	0	0	

G 17   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1137	0	0	

Q 18   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1137	0	0	

E 19   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1137	0	0	

N 20   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1137	0	0	

K 21   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1137	0	0	

R 22   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	22
       0	*	*	*	*	*	*	1137	0	0	

R 23   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	23
       0	*	*	*	*	*	*	1137	0	0	

R 24   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	24
       0	*	*	*	*	*	*	1137	0	0	

H 25   *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1137	0	0	

D 26   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1137	0	0	

S 27   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	27
       0	*	*	0	*	*	*	1137	0	0	

//