HHsearch 1.5 NAME c4y91L_ FAM FILE c4y91L_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4y91L_.a3m DATE Sat Mar 19 08:17:00 2016 LENG 66 match states, 66 columns in multiple alignment FILT 42 out of 46 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.4445 1.4127 SEQ >ss_dssp CHHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEEETTEEEEEEGGGEEEEEESSCCCC >sa_dssp EEDDDCBDCADEEEBDACACCEEEEDCEACBEDCDEEBACACDEEEEDEBDCECCEDCDCEEEBEE >ss_pred CCHHHHHHHHHHCCCEEEEEEECCEEEEEEEEEECCEEEEEEECCCEEEEEEEEEEEEECCCEEEC >ss_conf 915799999974498399999347189889987334899996189336999744445504761209 >Consensus nlQdxfLnxxrkxxxxVtixLvnGxxlxGxIxxfDxfxVllxxxgxqqLVYKHAISTIxpxxxxxl >c4y91L_ NLQDRFLNHLRVNKIEVKVYLVNGFQTKGFIRSFDSYTVLLESGNQQSLIYKHAISTIIPSSYVML >UniRef50_Q3A502(7-66:77) RNA-binding protein Hfq n=11 Tax=Desulfuromonadales RepID=Q3A502_PELCD E=8e-08 s/c=0.97 id=44% cov=92% NIQDQYLNQARKERVRVNIIMMSGEKLDGFIKSFDSFCVLIESKGDL-LLYKHAISSITSA----- >UniRef50_B7JTR0(20-75:77) RNA chaperone Hfq n=19 Tax=Bacillus cereus group RepID=B7JTR0_BACC0 E=1e-08 s/c=1.09 id=37% cov=86% --QEYLLQEAFQKRKNIMLILLKGLHIKGIIRGYDIFSILIEYEGKQQLVYKHAISTI-------- >UniRef50_B3PYU7(7-72:80) Protein hfq n=115 Tax=Bacteria RepID=HFQ_RHIE6 E=2e-21 s/c=1.56 id=45% cov=102% NLQDLFLNTVRKQKISLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHAISTIMPGQPMQM >UniRef50_B2JKR6(7-65:150) RNA chaperone Hfq n=1 Tax=Burkholderia phymatum STM815 RepID=B2JKR6_BURP8 E=6e-16 s/c=1.44 id=46% cov=86% --QNDFMNAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKRAISTI-------- >UniRef50_C8W3I4(20-80:85) RNA chaperone Hfq n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W3I4_DESAS E=5e-12 s/c=1.18 id=42% cov=94% -VQNKILVQLKEQQASIIVYLINGYRLGGKLKDFDTFTVILEEKETQYIVYKHAISTIIPEK---- >UniRef50_B7IZ69(6-75:83) Host factor Hfq n=4 Tax=Bacillus cereus group RepID=B7IZ69_BACC2 E=6e-07 s/c=0.79 id=34% cov=88% -VQNKVIENVKGKNSKVNFILNNGFRIEGKIVAYDDFCILVSTKApsnekqigdkqvfQNQLIYKHNISTI-------- >UniRef50_B6IY17(7-72:117) Host factor protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IY17_RHOCS E=9e-13 s/c=1.13 id=41% cov=100% -LQSKVLDVLRTGGTEVTVFLVTGVRLVGRIVAHDAYSLALTGHgGGLQLIYKHAVTTLVPSSPLSL >UniRef50_Q73AM9(19-77:78) Host factor-I protein n=136 Tax=Bacillus RepID=Q73AM9_BACC1 E=2e-11 s/c=1.18 id=33% cov=91% HLQEELYKQIKEEKGIVTIFLKSGVRIVGEVVAIDKFTVLMLVDGKQQLIYKQAVSTIM------- >UniRef50_Q0JYN3(16-72:108) Putative uncharacterized protein h16_B2359 n=2 Tax=Cupriavidus RepID=Q0JYN3_RALEH E=2e-06 s/c=0.95 id=31% cov=83% -LQHQQFAAYRTSQAPVIVHLATGARLQGLVLASDDYVVLLGRQPddiRPTVVYKRAI----------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * * * * 2337 * * * * 318 * * * * * * * * 1 0 * * * * * * 2811 0 0 L 2 * * * * * 4883 * 2001 * 923 4545 * * * * * 4647 3236 * * 2 0 * * * * * * 3420 0 0 Q 3 * * * * * * * * * * * * * 0 * * * * * * 3 0 * * * * * * 3511 0 0 D 4 * * 775 2207 * * 4370 * * * * 3158 * * * 4700 * * * * 4 0 * * * * * * 3511 0 0 R 5 5896 * 3205 5001 * 5347 6166 4057 2489 4193 * * 3724 2554 4697 3142 4890 4692 * 4575 5 0 * * * * * * 3511 0 0 F 6 3881 * * * 905 * * 3834 * 3457 4655 * * 4370 * * * 3642 * 3862 6 0 * * * * * * 3511 0 0 L 7 * * * * 4370 * * 4586 * 376 4954 * * * * * * * * 3219 7 0 * * * * * * 3511 0 0 N 8 4370 * 4700 3195 * * * * 3818 * * 698 * 4575 * * 4776 4712 * * 8 0 * * * * * * 3511 0 0 H 9 2507 * 4967 3034 * * 4248 * 4776 5347 5796 3070 * 2277 5581 * 3043 4700 4953 * 9 29 * 5669 * * * * 3511 0 0 L 10 2126 * * * 4793 * * 4053 * 1260 * * * * * * * 2270 * 4329 10 0 * * * * * 0 3458 0 1000 R 11 * * * * 4535 * * 3693 2455 * * * * * 520 * * * * * 11 0 * * * * * 0 3458 0 1000 V 12 * * 4630 2833 * 4543 * * 1027 * * * * 4535 4147 4123 3213 5597 * * 12 0 * * * * * 0 3458 0 1000 N 13 4790 * 3805 1299 * 4157 * * 2528 * * 4248 * 4263 * 2721 * * * * 13 0 * * * * * 0 3547 0 1000 K 14 * * * * * 3573 5958 * 1466 * * 2914 * 3641 1693 6002 * * * * 14 0 * * * * * 0 3547 0 1000 I 15 3641 * * * * 5014 * 1983 3419 * * 4825 * * 3727 3124 2860 2481 * * 15 0 * * * * * 0 3547 0 1000 E 16 4825 * 5807 2807 * * * 5014 4035 4790 * 3721 1689 4414 3415 3905 4054 5483 * * 16 0 * * * * * 0 3547 0 1000 V 17 5358 5229 * * * * * 2660 * 3815 * * * * * * * 475 * * 17 0 * * * * * 0 3547 0 1000 K 18 4391 * 5229 5014 * * * 2676 4703 * 4582 3690 * * * 3285 1231 4264 * * 18 0 * * * * * 0 3547 0 1000 V 19 * * * * 4596 * * 991 * 4582 * * * * * 4604 * 1424 * * 19 0 * * * * * 0 3547 0 1000 Y 20 * * * * 1295 * 3393 3095 * * * * * * * * * * * 1395 20 0 * * * * * 0 3545 0 1000 L 21 * * * * 4835 * * * * 106 4795 * * * * * * * * * 21 0 * * * * * 0 3545 0 1000 V 22 4531 * * * * * * 2963 3838 2511 4103 4601 * * * 4832 5008 1260 * * 22 0 * * * * * 0 3545 0 1000 N 23 * * * * * * * * 4302 * * 642 * * 5008 2349 3623 * * * 23 0 * * * * * 0 3545 0 1000 G 24 * * * * * 0 * * * * * * * * * * * * * * 24 0 * * * * * 0 3545 0 1000 F 25 4531 * * 4795 2212 * * 2789 * 4651 * 5008 * * * * 4832 1400 * 3730 25 0 * * * * * 0 3545 0 1000 Q 26 * * * * * * 4651 * 1608 4671 * * 5819 2100 1548 * * * * * 26 0 * * * * * 0 3545 0 1000 T 27 * * * * * * * 2151 * 751 3919 * * * * * 4719 3710 * * 27 0 * * * * * 0 3545 0 1000 K 28 * * 4795 3325 * 4773 * * 2053 * 5524 * 4801 2483 2943 5496 3345 3327 * * 28 0 * * * * 0 * 3545 0 1000 G 29 * * * * * 0 * * * * * * * * * * * * * * 29 0 * * * * * * 3558 0 0 F 30 * 5033 * 5057 4167 * * 3085 2268 3743 5947 * * 3439 2905 4156 4986 3112 * 4705 30 0 * * * * * * 3558 0 0 I 31 * * * * * * * 861 * 3720 * * * * * * * 1421 * * 31 0 * * * * * * 3558 0 0 R 32 5712 * 6077 2788 * * * 3736 2329 2765 * * * * 2563 4986 4215 2997 5622 * 32 0 * * * * * * 3558 0 0 S 33 1978 * 3897 * * 1906 * * * * * 4847 * * * 1681 * * 4661 5261 33 0 * * * * * * 3558 0 0 F 34 * * * * 654 * 4754 5057 * * * * * 5021 * 3689 4687 4817 * 3122 34 0 * * * * * * 3558 0 0 D 35 * * 0 * * * * * * * * * * * * * * * * * 35 0 * * * * * * 3558 0 0 S 36 4263 * 3581 * * * * 4666 2258 4748 * 1692 * 2822 * 3451 4783 * * * 36 0 * * * * * * 3558 0 0 Y 37 * * * * 719 * * * * * * * * * * * * * * 1350 37 0 * * * * * * 3558 0 0 T 38 * 2862 * * * * * 5762 * 5033 4848 * * * * 2263 1372 2442 * * 38 0 * * * * * * 3558 0 0 V 39 * * * * * * * 2184 * 3104 5712 * * * * * * 633 * * 39 0 * * * * * * 3558 0 0 L 40 4033 * * * 4687 * * 3073 * 630 5033 * * * * 4847 * 3836 * * 40 0 * * * * * * 3558 0 0 L 41 * * * * * * * 2785 * 671 3487 * * * * * 4659 3353 * * 41 51 4848 * 1585 585 * * 3558 1000 0 E 42 4848 * 5921 1461 * 4547 * * 3444 5057 4687 4847 * 5712 2799 3110 3865 * * * 42 0 * * * * * * 3558 0 0 S 43 * 5622 4330 3364 4659 3699 * * * * * 3429 * * 3112 2405 2841 2837 * 4666 43 91 4986 5067 0 * * * 3558 1000 0 G 44 * * 2226 2285 * 3918 3215 * 3114 * 5873 4633 5001 2690 * * 4373 * * * 44 85 4125 * 0 * 0 * 3566 1472 1203 N 45 4617 * 5539 4783 * 1003 * * 5784 * * 2809 3271 5947 * 3969 * 4109 * * 45 177 3294 6210 2694 242 * * 3558 2096 0 Q 46 * * 4803 * * 3330 4492 5977 1752 * 5693 4409 * 2406 2745 * 3808 4971 * * 46 22 * 6039 * * 0 * 3561 0 1000 Q 47 5511 * * 4653 * * * * * 3262 * 4607 3682 935 * 3479 3678 5370 * * 47 53 * 4802 * * 0 * 3561 0 1000 S 48 5498 * * * * * 4712 * * * * 3527 * 578 * 5549 3358 5222 * 4746 48 32 5498 * 0 * 0 * 3529 1000 1000 L 49 * * * * 4817 5033 * 4783 * 463 2952 * * * * * * 4547 * * 49 0 * * * * * * 3558 0 0 I 50 * * * * * * * 1140 * 4812 * * * * * * * 970 * * 50 0 * * * * * * 3558 0 0 Y 51 * * * * 3329 * * * * * * * * * * * * * * 151 51 0 * * * * * * 3558 0 0 K 52 * * * * * * * * 0 * * * * * * * * * * * 52 0 * * * * * * 3558 0 0 H 53 4986 * * * * * 411 * * * * 4659 * 3860 3210 * * * * * 53 0 * * * * * * 3558 0 0 A 54 171 * * * * * * * 4986 * * 4617 * * * * 4659 * * * 54 0 * * * * * * 3558 0 0 I 55 * * * * * * * 362 * 3993 * * * * * * * 2651 * * 55 0 * * * * * * 3558 0 0 S 56 * * * * * * * * * * * * * * * 196 2978 * * * 56 0 * * * * * * 3483 0 0 T 57 * * * * * * * * * * * * * * * 4195 143 4646 * * 57 0 * * * * * * 3483 0 0 I 58 * * * * 3633 * * 483 * 4614 * * * * * * * 2617 * * 58 0 * * * * * * 3483 0 0 I 59 2966 * * * 4422 * * 2858 * 5620 3067 * * 4557 * 3370 2512 2099 * * 59 0 * * * * * * 3308 0 0 P 60 * * * * * * * * * * * * 184 * * 3601 4751 * * * 60 0 * * * * * * 2954 0 0 S 61 1420 * * 3233 * 3590 * * 4492 5051 * * * 3457 * 1883 * * * * 61 0 * * * * * * 2880 0 0 S 62 * * * * * 5557 3006 * 1486 * * 4960 * 5190 1883 2861 5104 * * * 62 0 * * * * * * 2818 0 0 Y 63 * * * 3253 4647 * * * * * * 2856 982 * * 3046 * * * 3479 63 0 * * * * * * 2556 0 0 V 64 5164 * * * * * * 1712 * 2531 4600 * * * * * * 1144 * * 64 0 * * * * * * 2556 0 0 M 65 * * 4929 * * * 4469 * 4303 3976 4211 2370 * 2574 2872 2727 * 3254 * * 65 0 * * * * * * 2521 0 0 L 66 * * * * * * * * * 368 2150 * * * * * * * * * 66 0 * * 0 * * * 2447 0 0 //