HHsearch 1.5 NAME c4xd9D_ FAM FILE c4xd9D_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4xd9D_.a3m DATE Sat Jun 13 08:22:59 2015 LENG 86 match states, 86 columns in multiple alignment FILT 51 out of 55 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.8 EVD 0.4457 0.8490 SEQ >ss_dssp CCCCCCCSSCCEEEGGGTEEECCSCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHSCEEEETTEEEECCCCCCSCCCCSSCSCCC >sa_dssp EEEECECEDEBDCBBCDEDCDCDBEEEDDEEDEEEDBDEDCDDCCECBCDCCBEEDBEEDEDEEDEDDDDDEDEDEEEEEEEEEEE >ss_pred CCEEECCCCCCEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCC >ss_conf 95240468885065010257426605821124768999997765899999999742885436774078758888468835897888 >Consensus lxxxVxkxxxxexDLGnLlaxDxnpxdxxxxxxxexxLxxxaRdnxQxLinxlfxlxpxxxxxxgxxxxLPxPttxLPReKplPkP >c4xd9D_ LPITVSKPTPYTFDLGHLLANDPNPLELPKSEPLNASLKATARDGVQSLLNQLLTTCPITSSQQGVLLTLPAPSTILPRHKPLPTP >UniRef50_C4WTG6(21-105:343) ACYPI008665 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WTG6_ACYPI E=6e-15 s/c=0.96 id=35% cov=99% -SVSVTKVLDPEIDLGTLLCFDSNDFDTPQLRSDQEkYLTYETRNNVQLLINKLFEL-PMKNEDGYMYVDLPEPRYNLPREKPLPTP >UniRef50_A8Q1Y7(6-93:307) Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8Q1Y7_MALGO E=1e-21 s/c=1.18 id=33% cov=101% VSTAVEQgEMPLQLDTGLLASVDVNPMDIRKYmKDTEALLQARTRNSTQHLINTIFQLPIERHATYGPLASLPEFVTQLPREKPLPKP >UniRef50_Q7XPU3(14-93:330) Os04g0685100 protein n=2 Tax=Oryza sativa RepID=Q7XPU3_ORYSJ E=3e-19 s/c=1.20 id=32% cov=91% --------TNYEVDLGNLMAYDPSHHLPAASSSREELREECLRKGTelaQAVADALFALPATED-RDGPMVRLPPPTTRFPREKHLPRP >UniRef50_C4M883(2-87:258) Ribosome biogenesis regulatory protein, putative n=2 Tax=Entamoeba RepID=C4M883_ENTHI E=7e-15 s/c=0.95 id=23% cov=87% ----------FELDVGNLLVTDRSDVDIEKFKSDSwKYIGEIAKEASKTLIDNIYAREDVSDHSDpslGKVVILDEPEMKFPREKPLP-- >UniRef50_A8QG10(9-80:276) Ribosome biogenesis regulatory protein, putative n=1 Tax=Brugia malayi RepID=A8QG10_BRUMA E=6e-12 s/c=1.00 id=26% cov=81% LPTEVDKIIDPFVDVGNLLIIDNDPVidEGSTNKLSENELSARVRDNAQFLFNKIWEL-ERKRIDEALCAKV---------------- >UniRef50_B6KPN0(27-96:319) Ribosome biogenesis regulatory protein, putative n=3 Tax=Toxoplasma gondii RepID=B6KPN0_TOXGO E=4e-11 s/c=0.99 id=34% cov=74% --------------LNFLLCIDFSPVLHT------DDLSDLTRQNAQSMVAQLCAL-PHETTDDGLLVALPPPaknsTFKLPRMHPAP-- >UniRef50_A7ARL2(5-85:238) Regulator of ribosome biosynthesis, putative n=2 Tax=Piroplasmida RepID=A7ARL2_BABBO E=5e-17 s/c=1.10 id=31% cov=94% ---TPDKVDNLEYCLRNLIAIDATPVDASGCDA--ESLTNLSRDNTQLLINRIFSL-GRTTTEDGIFATLPKENgIVMPRMYPLPKP >UniRef50_UPI0000DA3CC1(2-82:93) PREDICTED: similar to RRS1 ribosome biogenesis regulator homolog n=1 Tax=Rattus norvegicus RepID=UPI0000DA3CC1 E=6e-17 s/c=1.09 id=35% cov=93% ----VYRELELEFHLGNLLASDSNPsmVLCQARALLEAQVCAPEWENPEHLNNQLWKLL-TKGMEEAVVVCLQEPVTGLPRRKPLP-- >UniRef50_A2E515(3-74:233) Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2E515_TRIVA E=2e-11 s/c=0.98 id=32% cov=80% -----------EFDLYHLSAF---TTGATKEEINPDYLKQSATDA----FISFFKALKECDHESDTKVKLPKPTVSIPREKPLPaeKP # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * * * 532 2563 * * * * * * 2847 * * 1 0 * * * * * * 3100 0 0 P 2 * * * * * * * * * * * * 1255 * * 783 * * * * 2 0 * * * * * * 3641 0 0 I 3 3321 * * * * * * 1612 * * * * * * * * 1552 2109 * * 3 0 * * * * * * 3644 0 0 T 4 4178 * 4861 2492 * * * * 4680 * * * * 3060 * 3492 1129 * * 5185 4 0 * * * * * * 3828 0 0 V 5 * * * * * * * 3177 * 3989 * * 4756 * * * * 341 * * 5 0 * * * * * * 4179 0 0 S 6 * * 2623 1596 5279 * 4676 * * * * 4229 3568 2944 * 3597 4806 * * 4155 6 0 * * * * * * 4194 0 0 K 7 * * * * * * * * 652 * * 3937 * 3658 2192 * * * * * 7 119 3658 * 0 * * * 4194 1356 0 P 8 2978 * 3361 2214 * * 4242 4467 * * * 5122 2546 * * 3387 4173 3170 * * 8 0 * * * * * * 4268 0 0 T 9 4145 * 2896 * * * * 1805 * 2038 4679 * * * * * 2393 4320 * * 9 0 * * * * * * 4345 0 0 P 10 * * 2002 2013 * * * * * 5355 * 3264 1419 * * * * * * * 10 0 * * * * * * 4612 0 0 Y 11 * 5639 * * 4440 * * * * 1480 * * 2973 5439 * * * 2543 * 1981 11 0 * * * * * * 4793 0 0 T 12 5215 * 2651 1318 4886 * 4831 5635 * * * * * 2691 5752 * 4139 3779 * 5597 12 0 * * * * * * 5068 0 0 F 13 * * * * 2030 * * 2827 * 2858 * 5727 * * * * 4296 2457 * 2155 13 0 * * * * * * 5080 0 0 D 14 * 3728 174 * * * 4713 * * * * * * * * * * * * * 14 0 * * * * * * 5080 0 0 L 15 4091 * * * * * * 4679 * 548 * * 4910 * * * 5279 2651 * * 15 0 * * * * * * 5106 0 0 G 16 4910 * * * * 322 4906 * 5187 * * 5361 * * 5566 5315 * * * 4825 16 0 * * * * * * 5106 0 0 H 17 * * * * 5361 * 3458 * * 2986 * 728 * * * 5983 3475 * * 4353 17 0 * * * * * * 5106 0 0 L 18 * * * * * * * * * 100 3905 * * * * * * * * * 18 0 * * * * * * 5107 0 0 L 19 2072 * * * * * * 4379 * 1162 3258 * * 5725 5603 4884 4413 4566 * * 19 0 * * * * * * 5107 0 0 A 20 833 3863 * * 5795 3800 * 3604 * 4954 * * * * * 4513 * 3038 * * 20 0 * * * * * * 5107 0 0 N 21 * 4568 * 4867 1850 * * 2331 * 4331 * 4876 * * * 3519 2410 4461 * 4537 21 49 * 4902 * * * * 5120 0 0 D 22 * * 145 5725 * * * * * * * 3703 * * * * * * * * 22 51 4845 * 1585 585 * 0 5028 1000 1000 P 23 3072 * * 5744 5334 * 5755 3707 5799 3138 * 5011 2137 * 3323 3198 5623 3205 * 6070 23 38 5262 * 2000 415 * 0 5021 1000 1000 N 24 4029 * 4140 4020 * * 4587 * * * * 1214 * 4934 5090 2235 3770 * * * 24 0 * * * * 0 * 5021 0 1000 P 25 5153 * 3716 3484 * * 4040 * * * * * 923 4856 5854 3792 4007 4961 * * 25 135 3982 5249 926 1078 * * 5117 1768 0 L 26 * * * * 2988 * 5269 2618 * 1758 5280 * 6116 * 5370 * 4885 1779 * * 26 92 5981 4454 1000 1000 * 0 5071 1000 1000 E 27 5548 * 1177 3784 5247 4834 * * 5809 3460 * 3461 3196 5877 6480 5015 4852 * * * 27 0 * * * * 1518 619 5020 0 1900 L 28 3143 4351 6104 2833 * 3685 5327 3093 4267 3416 * 5699 2954 * * 4656 3507 5601 * 5582 28 82 4630 6056 1936 437 * 0 5074 1530 1527 P 29 2665 4869 4251 3250 * 4380 * * 4159 * * 4850 3163 3502 4033 3412 2673 * * * 29 97 5714 4447 1000 1000 1664 547 5079 1000 1941 K 30 1975 * 4828 3834 * 4878 6012 * 2009 * 5006 * 5253 4648 4470 3318 3976 4785 * * 30 185 3951 4168 731 1331 * 0 5030 1832 2326 S 31 4544 5404 4256 3686 4528 6044 * 4748 * 2340 * 5807 4707 * 3485 2114 5797 * * 3110 31 248 3262 4224 601 1553 2530 274 5008 2262 2884 E 32 3661 * 2562 2883 * * * * 2522 5017 * 4033 5890 4023 4057 2648 4263 * * * 32 0 * * * * * 0 4938 0 3142 P 33 4060 * 3807 5178 * 5650 * 4017 4670 2681 * 4828 3467 * * 1372 4740 6085 * * 33 149 4625 4114 1504 627 929 1075 4938 1520 3142 L 34 4285 * 2511 * * * * * 3434 2706 * 2734 5851 5898 2229 4706 5013 5179 * 4930 34 103 3854 * 0 * 1180 840 5077 2100 2695 N 35 5276 * 3564 965 * 5275 * 5808 4933 5745 * 3783 4856 4457 5046 3759 5284 * * * 35 78 4242 * 0 * 0 * 5083 1496 2113 A 36 2448 * 1990 1446 * 5674 5013 * 4152 * * 4591 * * 5011 5745 * * * * 36 172 3376 5959 573 1610 * * 4852 2251 0 S 37 4200 5317 3326 3317 3756 * 3046 * 4942 3697 * 5312 * 4202 * 3510 * 4362 * 2323 37 0 * * * * * 0 5197 0 1000 L 38 4460 * * 5671 * * * 2939 * 546 * * * * 5225 * * 4111 * 4828 38 0 * * * * * 0 5197 0 1000 K 39 4166 4905 5397 4199 5741 4654 5734 4654 2373 3681 3995 5785 * 3565 3504 3392 3380 * * * 39 0 * * * * * 0 5197 0 1000 A 40 2635 * 4536 2377 * * * * 4542 5676 * 3360 * 3058 5403 2218 4018 * * 5438 40 0 * * * * 0 * 4928 0 1000 T 41 * 5321 * 5478 * 5436 5690 2535 * 1393 * * 4897 * 2767 3302 4411 * * 5164 41 29 5663 * 2322 322 * * 4932 1000 0 A 42 1252 5155 * 4897 * 4706 * * * 4376 * * * * * 2678 2018 5112 * * 42 34 * 5436 * * * * 4932 0 0 R 43 * 5281 * * * * * * 4737 3951 * * * * 520 * 3533 4194 4881 * 43 0 * * * * 0 * 4909 0 1000 D 44 * * 849 2258 * 6593 * * 3806 * * 3344 * 5333 * * 5028 * * * 44 0 * * * * * * 4932 0 0 G 45 3356 4907 * * * 2826 * * * 4753 * 908 * * * 3585 5031 4503 * * 45 48 * 4936 * * * * 4932 0 0 V 46 2964 * * * * * * * * 3022 * * 4882 * * 4703 1421 1722 * * 46 74 4325 * 1585 585 * 0 4843 1339 1000 Q 47 4987 * * 4882 * * 4999 * 3863 * * * * 321 * * * * * 4886 47 0 * * * * * 0 4843 0 1000 S 48 2972 * * 5372 5083 * 3420 6124 * 1296 * * * 4650 4473 3252 4703 4308 5318 * 48 0 * * * * * 0 4843 0 1000 L 49 * * * * 4886 * * 3897 * 238 5301 * * * * * * 5279 * * 49 0 * * * * 0 * 4843 0 1000 L 50 4376 5031 * * 2549 * * 1637 * 3165 * 4897 * * * * * 1817 * * 50 49 * 4907 * * * * 4932 0 0 N 51 3254 * 3651 * * 5109 * 4907 4971 * * 591 * * * 4548 6091 * * * 51 0 * * * * 0 * 4868 0 1000 Q 52 3835 * 5361 2693 * 5436 5690 * 2110 * * 4241 * 2197 3590 3574 4688 * * * 52 87 * 4092 * * * * 4932 0 0 L 53 * * * * 4805 * * 1322 * 1007 4612 * * * * * * 5277 * * 53 0 * * * * 0 * 5237 0 1587 L 54 * 5333 * * 996 * * 4698 * 3671 4495 * * * * * * * 1860 4756 54 29 * 5663 * * * * 4932 0 0 T 55 2673 * 5243 2956 4883 4606 * * 2487 * * 3736 * 2903 * 3433 3757 4074 * * 55 88 5716 4646 3000 193 0 * 4929 1000 1000 T 56 4299 * 4204 4808 * * * 5605 * 589 4470 * * * 4678 4634 4338 * * * 56 1089 5102 998 0 * 0 * 5032 1087 1673 C 57 * 2877 * 3207 4518 * 4881 4164 * 1642 * * 2279 * * * 4044 4835 * * 57 86 * 4117 * * 0 * 4442 0 4055 P 58 5271 * 4611 2913 * 4753 * 4533 4915 * 6168 5506 708 6023 * 5407 * * * * 58 0 * * * * 0 * 4883 0 1000 I 59 * * * 4126 * 5803 5333 2777 4263 6159 5478 * * 5977 3119 3012 1588 3680 * * 59 25 5852 * 0 * * * 4932 1000 0 T 60 5260 4936 5164 1440 * * 4994 * 2907 * * * * 4508 4146 4756 2042 * * * 60 0 * * * * * * 4932 0 0 S 61 4616 * 2884 4616 * 3688 4456 4531 5164 4402 4546 5478 4479 5348 2155 3688 3707 5155 * * 61 79 5155 5321 2322 322 * * 4932 1000 0 S 62 5299 * 4062 3787 7109 4337 3814 2792 * * 4085 4849 5789 * * 3385 2192 2799 * * 62 35 * 5370 * * 0 * 4914 0 1000 Q 63 3660 * 2248 1737 * * * * 6039 * * 4386 4450 4443 5269 2476 5316 5330 * * 63 0 * * * * 0 * 4909 0 1000 Q 64 4090 * 1393 2095 * 5079 4739 * * * 4323 4735 * 6078 * 3359 4839 * * 5345 64 54 4756 * 1585 585 * * 4932 1000 0 G 65 2569 * 4936 * * 762 * 6240 * * 5155 * * * * 4951 * 3144 * 5478 65 20 6204 * 3322 152 * * 4932 1000 0 V 66 * * * * * * * 2738 4756 3027 5478 * 2093 * 4106 4295 3433 2108 * * 66 26 5803 * 1000 1000 * * 4932 1000 0 L 67 * 5112 * * 3457 * 6068 4281 4936 1527 3906 * * * * * 6254 1803 * 3884 67 38 5260 * 0 * * * 4932 1087 0 L 68 1369 * * * * * * * * 2905 * * * * * 4907 5028 1267 * * 68 0 * * * * * * 4932 0 0 T 69 4172 4897 4399 4465 * * * 3415 2376 5828 * 5852 * 2277 4339 4108 2570 6068 * * 69 0 * * * * * * 4932 0 0 L 70 * * * * 5028 * * * * 152 5164 * * * * * * 4597 * * 70 0 * * * * * * 4932 0 0 P 71 * * 4691 * * * * * * * * * 112 4807 * * * * * * 71 35 5370 * 0 * * * 5016 1000 0 A 72 3089 * 3955 1518 * * * * 2660 * * * 2538 5106 4389 4601 * 5603 * * 72 37 5318 * 0 * * * 5016 1000 0 P 73 4471 5745 5318 5815 4607 4789 * * * * * * 479 4680 * 5713 4627 * * * 73 33 5463 * 2000 415 * * 5016 1000 0 S 74 4233 * * 3228 * * * 5310 5643 * * 4797 * * 4272 3654 998 2976 * * 74 68 4447 * 2563 268 * * 4894 1466 0 T 75 * * * * 3300 * * 3500 * 6091 3888 * * * * 4339 838 4095 * 4050 75 0 * * * * * * 4894 0 0 I 76 5961 * 4942 * * 4861 5834 4122 2903 3475 * 5473 3416 3083 2247 5008 5556 3045 * * 76 0 * * * * * * 4894 0 0 L 77 * * * * 2885 * * 2837 * 612 4453 * * * * * * 5323 * * 77 0 * * * * * * 4894 0 0 P 78 5207 * * * * * * * * * * * 40 * * * * * * * 78 0 * * * * * * 4780 0 0 R 79 * * * * * * * * * * * * * * 0 * * * * * 79 0 * * * * * * 4780 0 0 H 80 4625 * * 590 * 5470 4894 * * 4679 4460 * * * 4850 4662 5258 4206 * * 80 0 * * * * * * 4780 0 0 K 81 * * * * 5085 * 5169 * 379 4571 * * * * 3577 * * * * 4383 81 0 * * * * * * 4743 0 0 P 82 3613 * * * * * 4154 * 4158 * * * 506 5658 4771 4465 * * * * 82 0 * * * * * * 4743 0 0 L 83 5169 5387 * * * * * 2739 * 630 5484 * 4326 * * * * 3643 * * 83 0 * * * * * * 4743 0 0 P 84 * * * * * * * * * * * * 0 * * * * * * * 84 80 4208 * 1000 1000 * * 4671 1000 0 T 85 * * * * * 4851 * * 685 * * * 4898 * 2920 * 2773 4985 * * 85 0 * * * * * * 4027 0 0 P 86 * * * * * * * * * * * * 0 * * * * * * * 86 0 * * 0 * * * 3941 0 0 //