HHsearch 1.5 NAME c4x1jA_ FAM FILE c4x1jA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4x1jA_.a3m DATE Sat Jan 17 09:13:22 2015 LENG 83 match states, 83 columns in multiple alignment FILT 104 out of 133 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.0 EVD 0.4415 -1.0586 SEQ >ss_dssp CCCCEEEEEEEEEECCCSSSBCCEEEEEEEEEECCEECCCCCCCEEEEEEEEEEEEEEEECBSCCCEEEEEEEEEEEEEESCC >sa_dssp EEEDDCDCDEDECECBEEECDDDECEBDDCDCECEEEEEEEEEEDDCCCCDDDDEEDEBDBEDEEEEDEBDCBCECDCDECEE >ss_pred CCCCCEEEEEEEEEEEECCCEEEEEEEEEEEEEECCEEEECCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEEECCC >ss_conf 97655478627999995890847997449899826756212357665514020399999998799744999966866654479 >Consensus xkxxxCxxxxxxqxIxxxGCxsxxVxxxxCxGxCxSxxipsxxxxCxcCxxxxxxxxxVxLxCxxxxxxxxxvxxCxCxxCxx >c4x1jA_ DKSAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFVHCDSCMPAQSMWEIVTLECPGVDKLVEKILHCSCQACGK >UniRef50_Q4RNF7(72-183:186) Chromosome undetermined SCAF15013, whole genome shotgun sequence. (Fragment) n=3 Tax=Clupeocephala RepID=Q4RNF7_TETNG E=1e-18 s/c=0.84 id=30% cov=96% -RRDWCKTQPLRQTISEEGCRSRTVVNRFCYGQCNSFYIPRHmgpssgpaqsrgqasgsgrkspnkaqepFQSCSFCRPHRITQLTVQLDCPDLQPpfrh rKVQRVKQCRCMS--- >UniRef50_P12021(1059-1147:1150) Apomucin (Fragment) n=16 Tax=Eutheria RepID=MUCAP_PIG E=6e-17 s/c=1.00 id=22% cov=98% --KSSCKPSPVNVTVRYNGC-TIKVEMARCVGECkktvtYDYDIFQLKNSCLCCQEEDYEFRDIVLDCPDgstLPYRYRHITACSCLdPCQQ >UniRef50_A7RH96(34-120:125) Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RH96_NEMVE E=0.0005 s/c=0.52 id=29% cov=94% -----CRYRNFKQKVQIRDnplCIPKKIRRSKCVGSCKSSAFPivsakgnQFRKICNCCTPIVEENEIVQFDGCEDTLTLPVIKRCECRPCG- >UniRef50_C6SUP9(30-125:130) Putative glycoprotein hormone-alpha2 n=1 Tax=Strongylocentrotus purpuratus RepID=C6SUP9_STRPU E=0.0008 s/c=0.47 id=27% cov=93% -----CHLVGFTQKVEIPGCYVEMVAMNACRGFCNSYSYTSEwttlvasqgrqkfTTYGRCCAIKDTHEVHVLLECENNIRKRVTFRsaaSCECSLC-- >UniRef50_UPI00017C3D46(458-547:548) PREDICTED: similar to secretory mucin MUC6, partial n=1 Tax=Bos taurus RepID=UPI00017C3D46 E=3e-10 s/c=0.74 id=30% cov=93% -----CSVKVSEEEVTYQGC-TANITVTRCEGVCTSSASFNTNtmqvaTTCSCCHPISSYEKQLVLPCTDpavrgqqLVLTVQVFSSCACrrRRCG- >UniRef50_C6SUP5(35-121:127) Putative glycoprotein hormone-alpha2 n=1 Tax=Trichinella spiralis RepID=C6SUP5_TRISP E=8e-05 s/c=0.56 id=21% cov=98% -KKNGCSSTAVEKLITIPGCIPVRVQLNACRGYCLSWTVPDGRRtvasYAMCCRMVERELVEFETRCQESKRekfSFTSAVSCECFDC-- >UniRef50_UPI00005A2F23(2299-2383:2384) PREDICTED: similar to otogelin n=2 Tax=Tetrapoda RepID=UPI00005A2F23 E=5e-07 s/c=0.66 id=25% cov=90% -----CQKVIIKSIIKKQDCISKnPVNVASCDGKCPSATIYninieSHLRFCKCCRENGVRNLSVPLYCSGngteVMHTLQEPIDCTCQ---- >UniRef50_UPI000069F784(1083-1172:1173) Mucin n=4 Tax=Xenopus (Silurana) tropicalis RepID=UPI000069F784 E=1e-08 s/c=0.68 id=21% cov=99% -QKAGCLVQKDVKIITFGSCESeQTVEMAYCEGTCSTKSIYsadsnSMEHSCSCCQEKKTSQRQVDLKCKDGSKsvfSYTYVEECGCTSTE- >UniRef50_Q2A125(31-121:124) Cerberus-like n=1 Tax=Hydra magnipapillata RepID=Q2A125_HYDMA E=1e-06 s/c=0.60 id=23% cov=98% NQEEICKSITFIQPIIREGCDTIMVENSYCVGSCKSITSISTDTninpsnFSYYCDAAEIHEEKFQLNCnsrkkKNLTKIIAVVKSCKCKA--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 1158 1774 * * * * * * * 1946 * * * * * * * * 1 0 * * * * * * 3684 0 0 K 2 * * 3934 * * * * * 887 * * * * 2697 2061 * * * * * 2 0 * * * * * * 4957 0 0 S 3 3770 * * 3714 * 5119 3723 * 2030 * * 3295 * 5306 2490 3276 4089 * * 4879 3 0 * * * * * * 5127 0 0 A 4 3159 * 1766 4544 * 4519 * * 4817 * * 3612 4752 * * 1645 4906 * * * 4 0 * * * * * * 5127 0 0 W 5 * * * 3803 * 3102 * 4544 * * * * * * 5002 2499 3460 * 1089 * 5 0 * * * * * * 5127 0 0 C 6 * 0 * * * * * * * * * * * * * * * * * * 6 0 * * * * * * 6103 0 0 E 7 6096 * 5576 4788 * 5858 3141 * 1537 5605 6521 * * 3181 2719 3310 4416 6410 * * 7 0 * * * * * * 6115 0 0 A 8 3028 * * 6545 * 4227 * 4592 3225 2373 * * 4665 * 5351 3543 2291 3339 * 5716 8 0 * * * * * * 6120 0 0 K 9 4743 * * 5355 5943 6463 4412 4298 4006 4297 6610 * * 2933 3654 3993 2984 1943 * 5073 9 0 * * * * * * 6142 0 0 N 10 3797 * * 4179 * 2404 6447 4952 4092 6308 6206 4253 1657 6402 6439 4209 3906 4585 * * 10 0 * * * * * * 6142 0 0 I 11 * * 6618 6271 2018 * 6003 2540 6216 3822 4652 5053 * 6058 * 6373 4506 2356 * 3037 11 0 * * * * * * 6142 0 0 T 12 6440 * 4622 3200 6607 * * 4213 2494 5491 6625 3716 5681 3462 3596 4907 2398 4026 * 6439 12 0 * * * * * * 6160 0 0 Q 13 * * 4659 3835 * * 4474 * 3256 * 4827 4873 * 1194 4902 6475 3137 4453 * 5047 13 0 * * * * * * 6331 0 0 I 14 * * * 3171 * 6600 5973 2998 3388 5105 * 5540 6031 * 3560 6444 2511 2231 * 3451 14 0 * * * * * * 6296 0 0 V 15 5847 * * * 6088 * * 1020 * 2891 * * * * * * * 1614 * 6225 15 0 * * * * * * 6208 0 0 G 16 4195 * 5101 3422 6655 5606 6594 5237 3913 6787 * 5505 * 3799 2183 2770 2478 5493 6794 6813 16 32 5505 * 0 * * * 6208 1502 0 H 17 5047 * 6555 3154 5603 * 2736 2811 3611 6177 4794 * * 5949 4205 4668 * 3079 5167 2777 17 0 * * * * * * 6208 0 0 S 18 5989 * 2566 2779 * 4447 6376 * 4544 * * 2997 1726 4001 5125 4652 * 6555 * * 18 0 * * * * * * 6208 0 0 G 19 * * 2870 5478 * 539 6579 6496 * * * 4466 * 5216 * 4464 * * 6213 * 19 25 5857 * 1585 585 * * 6216 1000 0 C 20 * 28 * * * * * * * * * * * * * * * * * 5690 20 101 5387 4512 0 * * * 6216 1447 0 E 21 * * 3552 2340 6620 * 4970 3208 3145 5305 5954 6574 * 4142 3022 3942 4022 3756 * 5538 21 34 * 5439 * * 0 * 6211 0 2463 A 22 4050 * * 4281 * 5248 * 6092 5142 5103 * * 2949 6674 5435 1257 2537 5570 * 5994 22 267 2949 4663 0 * 0 * 6201 3513 1322 K 23 3087 * * 3279 4907 * * 3937 2555 * 5226 * * 3719 3690 3903 4601 2169 * * 23 88 4082 * 0 * 0 * 6192 2506 1830 S 24 5318 * 6145 2383 5809 * * 4989 3859 4960 4800 4606 2621 6884 3744 5347 2332 4062 * 6257 24 86 4109 * 0 * * * 6216 2596 0 I 25 6675 * * 6240 * * * 1446 * 3411 6145 * 6280 * * * * 1032 * * 25 19 * 6282 * * * * 6216 0 0 Q 26 4841 * 3275 3170 * * 4316 5909 5396 5120 4989 2794 4869 3127 2990 4573 3760 3937 * * 26 0 * * * * 0 * 6204 0 1000 N 27 6240 * * * * * * 3276 * 2881 2904 1404 * * 5857 5173 4947 2653 * * 27 0 * * * * * * 6216 0 0 R 28 3392 * * * 6225 * 3860 * 4479 5409 6844 1629 5575 6283 3222 3566 2614 5390 * 6731 28 31 * 5577 * * * * 6177 0 0 A 29 2498 * * 5885 2493 4963 6738 6467 5092 3403 4900 * * * 3167 4708 5309 3525 6546 2776 29 19 6226 * 0 * 0 * 6165 1000 1504 C 30 * 0 * * * * * * * * * * * * * * * * * * 30 0 * * * * * * 6183 0 0 L 31 4656 * 4318 2550 3573 * 5830 * * 5557 * 6026 * 4784 2745 4259 4380 2553 5855 2968 31 0 * * * * * * 6183 0 0 G 32 * * * * * 0 * * * * * * * * * * * * * * 32 0 * * * * * * 6183 0 0 Q 33 3408 6026 6684 3938 4060 6838 3837 * 3274 * * 5978 * 2298 4042 2995 3331 6724 * 4077 33 0 * * * * * * 6183 0 0 C 34 * 0 * * * * * * * * * * * * * * * * * * 34 146 3381 * 2347 316 * * 6183 2925 0 F 35 4336 * 4542 4585 3701 2869 * 5400 4363 6083 5445 3201 4033 6387 6026 3061 4028 5506 * 2818 35 29 7219 6241 0 * * * 6183 1000 0 S 36 5811 * 5546 * * 5135 * * * * * 4566 * * * 292 3772 * * * 36 13 * 6817 * * * 0 6172 0 1000 Y 37 3698 * * 6616 2296 6406 6483 4808 4397 3695 5035 6214 * 6222 * 3102 * 6721 5702 1629 37 53 4805 * 3070 183 * 0 6169 1942 1464 S 38 3264 * 4542 4719 3548 * 4154 6247 5591 * 5843 5178 * 5756 5638 1731 3165 5115 * 3131 38 28 5701 * 538 1683 * 0 6169 1648 1464 V 39 4925 * * * 3919 6746 6406 1411 5968 4985 3189 * * * 5754 3999 5338 2506 * 3947 39 20 6214 * 2322 322 * 0 6169 1000 1464 P 40 * * * * 3475 * * 6027 * 4158 * 5070 1023 5866 6885 * 5078 4837 6219 2229 40 193 2994 * 2356 313 * 0 6169 3999 1464 N 41 5843 * 5403 5325 6214 5335 3781 * 5018 6483 * 3465 * 3815 2954 1226 4699 * * 5361 41 329 2296 * 3144 173 * 0 6169 4525 1464 T 42 2988 * 5583 5725 4265 6004 4242 3597 * 3096 3335 * 3814 5643 * 2774 3081 5388 * 4808 42 205 2915 * 2913 206 * 0 6169 3926 1464 F 43 4932 * 4242 2126 2765 5571 6718 4985 4385 3952 6790 5697 * 3267 4914 4102 4269 4206 * 4876 43 154 3305 * 2952 200 * 0 6169 3657 1464 V 44 5741 * 5223 3473 * 5566 2385 * 4537 * * 4210 3038 4282 2748 5666 2307 6505 * * 44 189 3024 * 2644 251 * 0 6161 3794 1464 H 45 5635 * 5383 * 3225 6807 3630 5823 4453 6646 * 4727 6717 3822 5061 1551 3131 * * 3597 45 184 3059 * 3166 170 1000 1000 6121 3652 1464 C 46 4309 300 * * * 3591 6071 * * 6539 * * * * * 5115 * * * * 46 12 * 6958 * * 0 * 6064 0 1000 D 47 3134 * 3606 4523 * 6259 6328 6610 3662 4981 4528 3926 6076 5027 4656 1801 3288 5912 * 6182 47 0 * * * * * 0 6069 0 1000 S 48 5776 580 * * 4293 * 5618 * * * 6076 * * 6195 5046 3149 4669 6803 * 5541 48 0 * * * * 0 * 6069 0 1000 C 49 * 0 * * * * * * * * * * * * * * * * * * 49 0 * * * * * * 6067 0 0 M 50 4451 * 5381 * * 5321 4615 4756 3200 5129 4554 6054 * 2002 2362 3925 3199 6203 * * 50 0 * * * * * * 6067 0 0 P 51 4059 * * 1759 * * * 3050 6720 * 4603 * 1142 * * * 6837 6481 * * 51 0 * * * * * * 6067 0 0 A 52 2890 * 4711 3494 * * 6087 4517 3774 3265 4732 6167 * 6010 6975 3359 3267 2195 * 6969 52 0 * * * * * * 6067 0 0 Q 53 * * 2781 2643 * 3584 6388 * 2416 6821 * 4894 * 5329 2400 3479 4683 5250 * * 53 0 * * * * * * 6067 0 0 S 54 5212 * * 4515 3340 * 6481 4934 5028 4490 5287 6307 * * 5991 2936 1660 3399 4960 3583 54 0 * * * * * * 6067 0 0 M 55 6933 * 5807 2223 * * 2303 6037 4830 5046 6565 5186 * 4988 2928 3379 3313 4838 * 4512 55 0 * * * * * * 6067 0 0 W 56 * 5617 4210 2910 4840 * 6344 5236 4498 3948 4979 3401 4947 3954 3296 4320 4650 4050 3114 5736 56 0 * * * * * * 6067 0 0 E 57 5307 * * 3542 * * 5872 3579 3663 4106 4443 4590 * 6388 2029 * 5381 1930 * 5617 57 0 * * * * * * 6067 0 0 I 58 4825 * 3960 3479 5673 * 3599 4817 2961 5608 6179 3713 4654 3628 5828 2742 2771 * * * 58 0 * * * * * * 6067 0 0 V 59 4910 * * * 3720 * * 2942 * 3547 * * * 6176 * * 5455 647 * * 59 19 6248 * 3170 170 * * 6067 1000 0 T 60 4800 * 4495 3664 * 6178 4736 * 3710 5037 * 5040 3391 3426 4765 3653 2214 3611 6436 4696 60 0 * * * * * * 6067 0 0 L 61 6349 * * * 4961 * * 4969 6248 344 5562 * * * * 5872 5991 3864 * * 61 36 5345 * 504 1762 * * 6067 1661 0 E 62 5370 * 3063 4063 4962 * 3681 * 3742 4559 6355 2870 4888 3809 2947 6154 3952 4524 4986 4979 62 20 6215 * 1000 1000 * * 6067 1000 0 C 63 5617 122 * * * 5038 * * * * * 5872 * * * 6215 * * * * 63 133 3501 * 2233 345 * * 6067 3463 0 P 64 4526 5844 4545 3383 * 6597 * * 5059 5184 * * 1397 3578 4091 3398 3289 * 6217 * 64 57 4681 * 2393 305 * * 6058 2460 0 G 65 6297 * 1808 3895 * 2290 5155 * 6285 * 6052 2154 * 5107 5755 5749 4425 6205 * 5434 65 873 1166 6947 1903 449 * * 6058 4985 0 V 66 4716 * 5834 4335 * 2694 6798 2961 5080 2603 5257 4510 * 6939 4017 5085 * 2062 * * 66 23 5996 * 1240 794 0 * 6054 1612 1000 D 67 5887 * 3187 4432 * 6952 6044 4190 2699 5981 5883 3822 3281 4637 5897 3646 3000 3550 * 4595 67 122 3619 * 2228 346 * * 6052 3375 0 K 68 * * * 6315 5604 * 2311 * 1613 4478 * * 4477 4599 3152 5402 5626 5248 * 3004 68 137 3461 * 1814 483 * * 6052 3412 0 L 69 4779 * 7952 5185 5472 * * 4748 2895 4819 5541 5241 * 4070 2688 3626 2014 3580 6042 6315 69 41 5161 * 1585 585 * * 6052 1652 0 V 70 * * * * 3322 * * 3226 * 3591 5402 * * * 4221 5858 6556 1772 * 1680 70 0 * * * * * * 6047 0 0 E 71 6155 * 4745 4774 * * 4941 5583 3013 3782 4734 * 5062 2461 2892 5206 2767 3817 * 4908 71 14 6685 * 1585 585 * * 6047 1000 0 K 72 5764 * 4572 3225 * * 3339 2867 4447 3972 4953 6143 * 6556 3746 3372 4862 2941 * 3405 72 39 5242 * 1571 592 * * 6047 1724 0 I 73 2951 * * * 4292 * 4645 1585 * * * * 3251 * * * 5769 1631 * * 73 75 4307 * 1329 733 * * 6047 2652 0 L 74 5384 * 3930 2214 * 6514 5644 6811 2404 3943 5202 * * 4508 3678 4557 2440 5313 * * 74 58 4659 * 1357 714 * * 6019 1959 0 H 75 4579 * 4147 2073 * 4811 4812 * 4059 * * 5862 * 3930 3903 1714 4347 * * 5090 75 20 6156 * 2000 415 * * 6016 1000 0 C 76 * 43 * * * * * * * * * * * * * * 5090 * * * 76 0 * * * * * * 6016 0 0 S 77 2852 * 4027 3405 * 3515 6255 * 3039 6851 6156 5679 * 4013 3925 2562 3945 4327 * 5090 77 0 * * * * * * 6016 0 0 C 78 * 43 * * * * * * * * * * * * * * * 5090 * * 78 16 6517 * 1000 1000 * * 6016 1000 0 Q 79 4737 * * 4490 4001 4215 * 4664 3277 4335 3721 * * 2951 2707 2816 3441 5873 * * 79 43 5098 * 0 * * * 6092 1061 0 A 80 2505 * 3991 5560 * 6360 5913 4051 * 4124 * * 1638 * 3797 2748 6332 5671 5699 * 80 36 5353 * 1000 1000 * * 5884 1000 0 C 81 * 53 * * * * * * * * * * * * * * 4789 * * * 81 0 * * * * * * 5384 0 0 G 82 * * 3372 2404 * 1078 * * 4224 * * * * 3623 4031 4476 * * * * 82 0 * * * * * * 4285 0 0 K 83 * * * 3484 * * * * 1414 * * * * 2494 1483 * * * * * 83 0 * * 0 * * * 3299 0 0 //