HHsearch 1.5 NAME c4wv4A_ FAM FILE c4wv4A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4wv4A_.a3m DATE Sat Jan 31 08:20:46 2015 LENG 86 match states, 86 columns in multiple alignment FILT 34 out of 38 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.5 EVD 0.3954 -0.2328 SEQ >ss_dssp CCHHHHHHHGGGTCCCSSCHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCHHHHGGGGGGGSSCCC >sa_dssp EEEEEDCDDDBEEDEBECDCEEBBEECEEEEDECECDDDBCDDACDCCEDEDDBCEDADECBDEEEDEEDEEBCEDBDEEDEEEEE >ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC >ss_conf 97499999964078999998999999997199887789999999999999999999999984340103429999999997198779 >Consensus sxxlxeflxxlddyxPxIPDxvtxxyLxxaGfxxxDxrvxRlisLaaqKFisdIaxDAxqxxrxrkxvLtxeDLxxALxeyGinik >c4wv4A_ STPLVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKKYTLTMEDLTPALSEYGINVK >UniRef50_D2VRR4(8-100:142) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VRR4_NAEGR E=2e-24 s/c=1.22 id=44% cov=98% ---MQEFLDSMEDYNPAIPDQIISYYLQQSGFKTTDKRVLRLVSLSAHKFLAEICKEshgfcarrtAKQQGKEPRYVLATEDLYHSLKDYGINIQ >UniRef50_Q01GW3(23-124:162) Putative TATA box-binding protein asso (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01GW3_OSTTA E=7e-23 s/c=1.06 id=42% cov=93% ------FLSRLDDCQPVIPDELTNHYLKRAGVREPDVRVTRLISLVTEQFVQSVADDAYRCAvqrhqaqakdkrergydtRDKRIVLENEDLAAALKDHG VNL- >UniRef50_A9UNY9(77-178:185) Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UNY9_MONBE E=1e-21 s/c=1.02 id=42% cov=97% ---LAAFSEALDDFVPVIPDEVIQYYLRKAGVDPSDQRVVRMVSLATQKFVADTALDAMNHNRHRapskkgkllmavlnwlvqedNRIMGMDDLSFALKA QGVDI- >UniRef50_A9CT17(7-101:108) Transcription initiation factor TFIID subunit TAF10 n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CT17_ENTBH E=5e-20 s/c=1.04 id=42% cov=94% -----ELKSKLDNYTPLLPDSVIDYFLEKNGINTKNENVKKLISLMAHKFLTDVALNAFQFHKIhlkarlkdkrfakeKKITLQVVDLEKALEEMGINI- >UniRef50_A2DIF6(10-104:123) Putative uncharacterized protein n=2 Tax=Trichomonas vaginalis RepID=A2DIF6_TRIVA E=2e-19 s/c=1.02 id=34% cov=100% SADIENFMIKLQDYPSPIPDSVIKHICAESGLNTTDARVTSAISVVTQKFISEVLRNCSDFAkaraaqenpgKIRKLDLQFSDLKQALAKRGIHV- >UniRef50_B0E7A6(18-110:121) Transcription initiation factor TFIID subunit 10B, putative n=2 Tax=Entamoeba RepID=B0E7A6_ENTDI E=1e-16 s/c=0.94 id=38% cov=84% ---------------SVIPTEIVNHYMAMAGFQSQDKQIAKAVALATEKFMFEVITDAQayglthlhSHSAIKPVtTMTLEDVASALKDRGINVK >UniRef50_Q12030(73-199:206) Transcription initiation factor TFIID subunit 10 n=8 Tax=Saccharomycetaceae RepID=TAF10_YEAST E=3e-21 s/c=0.80 id=45% cov=98% --TLEEILEMMDSTPPIIPDAVIDYYLTKNGFNVADVRVKRLLALATQKFVSDIAKDAYEYSRIRssvavsnannsqararqllqgqqqpgvqqisqqqh qqnekttasKVVLTVNDLSSAVAEYGLNI- >UniRef50_A8J8H6(19-135:154) Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8J8H6_CHLRE E=1e-16 s/c=0.75 id=35% cov=99% --STEQVLNGLAEAPLVVPPQLVQYYMRKSGQGPilynmsaddreanEDMRLTQVVSLASQRFLATVLNDAMQYHKMkrgagpkamkeagldpkdKRRVL RTEDLAAALqQEYGVNIR >UniRef50_Q234H5(251-344:361) Putative uncharacterized protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q234H5_TETTH E=4e-15 s/c=0.88 id=30% cov=93% ------LMQQMVDYNAKIPPILVQKILEEVGFESTDESTYKMIGMLTDKFLDEVINQIHQsrYVQMDKRSkkdkknnkdeyskLLTYDLINQLRQYGLNI - # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1845 0 0 T 2 1504 * * * * * * * * * * * * * * 2897 962 * * * 2 0 * * * * * * 2249 0 0 P 3 4381 * 3129 * * * 4093 * * * * 4380 4658 * * 1428 1645 * * * 3 0 * * * * * * 2759 0 0 L 4 * * * * * * * 3615 * 346 4069 * * * * * 3791 * * * 4 0 * * * * * * 3106 0 0 V 5 2471 * 4428 1888 * * * * 5219 * * 5085 * 4069 3131 3006 3448 4137 * * 5 0 * * * * * * 3106 0 0 D 6 3560 * 2554 942 * * * * * * * 2913 * 3447 * * * * * * 6 0 * * * * * * 3277 0 0 F 7 * * * * 797 * * 4533 * 1869 * * * * * * * 3216 * * 7 0 * * * * * * 3481 0 0 L 8 * * * * 4886 * * 4121 3652 1008 2234 * * * * 4484 * 4874 4625 * 8 0 * * * * * * 3481 0 0 M 9 3779 * 3641 3508 * 4325 * 4164 5358 5423 5805 2498 * 3136 3692 2715 4625 5220 * * 9 0 * * * * * * 3481 0 0 Q 10 3248 * 3880 * * 4428 * * 2827 4588 3421 3978 * 1793 4266 3314 * * * * 10 0 * * * * * * 3481 0 0 L 11 * * * * * * * * * 603 1550 * * * * * * * * * 11 0 * * * * * * 3481 0 0 E 12 3652 * 1013 2541 * * * * 5075 * 4656 5469 * 4164 * * 4946 3779 * * 12 28 5699 * 0 * * * 3481 1000 0 D 13 * * 705 2939 * 4429 4625 * * * * 3781 * 4946 * 3970 * * * * 13 30 5625 * 1000 1000 * * 3481 1000 0 Y 14 4428 4948 * * 3154 * * 4625 * 4886 * 5485 * * * * 5446 * * 537 14 0 * * * * * * 3481 0 0 T 15 2606 * * 5423 * * * * 5220 * * 3169 2469 2935 * 3675 2279 3666 * * 15 0 * * * * * * 3481 0 0 P 16 3826 * * * * * * * * 4468 * * 340 * * 3408 * * * * 16 0 * * * * * * 3536 0 0 T 17 4764 * * * * * * 2557 3826 2403 * * 4279 * * 5592 1862 2423 * * 17 0 * * * * * * 3536 0 0 I 18 * * * * * * * 235 * 3696 * * * * * * * 3771 * * 18 0 * * * * * * 3536 0 0 P 19 * * * * * * * * * * * * 0 * * * * * * * 19 0 * * * * * * 3536 0 0 D 20 * * 407 3939 * * * * * * * 5496 3112 * * * 4549 * * * 20 0 * * * * * * 3536 0 0 A 21 1606 * 5785 1947 * * * 3826 * * * * * 3608 4690 2636 * 4574 * * 21 0 * * * * * * 3536 0 0 V 22 * * * * * * * 3041 * 1372 * * * * * * * 1023 * * 22 0 * * * * * * 3536 0 0 T 23 * * * * * * * 2108 * 5589 * * * * * 4690 1057 2133 * * 23 0 * * * * * * 3536 0 0 G 24 5220 * 1923 3390 * 5856 5793 4210 4279 4955 5397 2915 * 2676 * 4027 * 3904 * * 24 0 * * * * * * 3536 0 0 Y 25 4690 * * * 4990 * 1573 * 3826 5224 * 4357 * * * * * * * 1160 25 0 * * * * * * 3536 0 0 Y 26 * * * * 2887 * * 2439 * 5156 * * * * * * * * * 616 26 0 * * * * * * 3536 0 0 L 27 * 4279 * * * * * * * 417 2326 * * * * * * * * * 27 0 * * * * * * 3536 0 0 N 28 2537 * * 2286 * 5645 5592 * 2271 * 5529 4580 * 3105 3540 4574 3897 * * * 28 0 * * * * * * 3536 0 0 R 29 * * * 3035 * 4690 * 4958 1572 3861 3894 * * 3376 2455 4955 5397 * * * 29 0 * * * * * * 3536 0 0 A 30 1304 * * * * 5348 * * * * * 3062 * * * 1481 * 3432 * * 30 0 * * * * * * 3536 0 0 G 31 * * * * * 0 * * * * * * * * * * * * * * 31 0 * * * * * * 3536 0 0 F 32 5224 * * * 872 * * 4727 * 3376 * * * 4468 * * * 2014 * * 32 39 5220 * 2807 222 * * 3536 1000 0 E 33 4103 5397 2696 2770 * 3771 * * 4119 * * 2854 5793 2603 5012 4544 4958 4666 * 5645 33 57 4690 * 1000 1000 * * 3536 1000 0 A 34 5856 2470 * 5012 * 4955 * * * * * 3818 3265 5220 * 2476 1576 5490 * * 34 67 4468 * 3700 115 * * 3536 1000 0 S 35 3192 * 5348 3540 * * * * 4727 * * 4231 3134 4549 * 2106 2430 3127 * * 35 26 5793 * 1585 585 * * 3536 1000 0 D 36 * * 96 * * * * * * * * 4727 5220 * * * * * * * 36 0 * * * * * * 3536 0 0 P 37 3676 * * 3208 * * * 4714 3264 5645 4468 * 2027 3641 4958 4027 * 2418 * * 37 0 * * * * * * 3536 0 0 R 38 * * * * * * 5220 * 3598 * * 4727 * 3821 573 3186 * * * * 38 0 * * * * * * 3536 0 0 I 39 * * * * * * * 2177 * 1825 5559 * * * * * 3826 1304 * * 39 38 5276 * 4907 49 * * 3536 1000 0 I 40 2985 * * * * * * 3864 1788 4764 * * * * * * 1887 2859 * 3826 40 0 * * * * * * 3536 0 0 R 41 * * * * * * * * 2244 * * * * 4468 531 4279 * * * * 41 0 * * * * * * 3536 0 0 L 42 3408 * * * * * * 5681 * 586 2515 * * * * * * 4468 * * 42 0 * * * * * * 3536 0 0 I 43 * * * * 4908 * * 1535 * 1959 * * * * * * * 1456 * * 43 0 * * * * * * 3536 0 0 S 44 2011 * * * * 3152 * * * * * * * * * 645 * * * * 44 0 * * * * * * 3536 0 0 L 45 * * * * * * * * * 344 3826 * * * * * * 2822 * * 45 0 * * * * * * 3536 0 0 A 46 705 * * * * * * * * 3186 4727 * * * * 3497 4574 3207 * * 46 0 * * * * * * 3536 0 0 A 47 1141 * * * * 4690 * * * * * * * * * 3923 1178 * * * 47 0 * * * * * * 3536 0 0 Q 48 * * 3826 3070 * * 2782 * * * * * * 589 * * * * * * 48 0 * * * * * * 3536 0 0 K 49 * * * * * * * * 157 * * * * 5012 3797 * * * * * 49 0 * * * * * * 3536 0 0 F 50 * * * * 133 * 4955 * * 4990 * * * * * * * * * 5348 50 0 * * * * * * 3536 0 0 I 51 * * * * * * * 1536 * 1941 3498 * * * * * 4908 1873 * * 51 0 * * * * * * 3536 0 0 S 52 2291 * 3826 * 4549 * * * * 4990 * * * 5012 5224 1067 3109 * * * 52 0 * * * * * * 3536 0 0 D 53 * * 592 2311 * * * * * * * * * 4085 * 5012 4468 * * * 53 0 * * * * * * 3536 0 0 I 54 * * * * * * * 885 * 4393 * * * * * * 4616 1434 * * 54 0 * * * * * * 3536 0 0 A 55 980 4764 * * * * * 2298 * 2884 * * * * * 5276 4990 4054 * * 55 0 * * * * * * 3536 0 0 N 56 3899 * 3603 * * 5529 4260 * 4082 2795 * 2436 * 3642 3693 3670 3138 4666 * * 56 0 * * * * * * 3536 0 0 D 57 * * 388 4764 * * * * * * * 3486 * 3826 * 4666 * * * * 57 103 3858 * 2784 226 * * 3536 1507 0 A 58 337 4279 * * * * * 3826 * * * * * * * 3536 * * * * 58 0 * * * * * * 3536 0 0 L 59 * * * * 3040 * 3826 * 4764 2713 2173 * * 4549 4958 4279 * * * 1886 59 63 4549 * 3000 193 * * 3536 1000 0 Q 60 * * 4279 3608 * * 5276 * * 4690 * 4616 * 670 4115 4549 4955 * * * 60 105 3826 * 1000 1000 * * 3536 1000 0 H 61 * 4115 * * 3120 * 1650 * * * * * * 3835 4958 4955 * * * 1419 61 32 5519 * 4000 93 * * 3536 1000 0 C 62 1920 2967 * * * 4764 3031 * * * 4958 4616 * 4990 * 2089 * 3826 4690 * 62 239 2709 * 3949 97 * * 3536 2108 0 K 63 4549 * * 4958 * * * * 1353 * * * * 3826 1111 * * * * * 63 0 * * * * * * 3536 0 0 M 64 3955 * 3301 4764 * * 4616 1278 * 3954 1992 * * * * * 5156 * * * 64 407 2024 * 4461 67 * * 3536 2627 0 K 65 * * 3826 * * * * * 1611 * * * 4764 * 823 * * * * * 65 821 1205 * 4899 49 * * 3536 2514 0 K 66 * * * * * * * * 1020 * * 4616 4549 * 1239 * * * * * 66 0 * * * * * * 3536 0 0 Y 67 4690 * * * 5348 * * 3196 * 3103 * * 4666 * 2676 4990 2970 2607 * 2380 67 63 4549 * 0 * * * 3536 1000 0 T 68 * * 4279 * * * * 4616 * * * * * * * 3826 1471 1069 * * 68 105 3826 * 3700 115 * * 3536 1000 0 L 69 * * * * 4666 * * * * 189 3582 * * * * * * * * * 69 0 * * * * * * 3536 0 0 T 70 3497 * * 4115 * 4616 * * * 3826 5496 * * 2958 4468 * 872 * * * 70 0 * * * * * * 3536 0 0 M 71 * * * 3956 4279 * * * * 3049 1336 5012 * * * 4908 2480 3016 * * 71 0 * * * * * * 3536 0 0 E 72 * * 2589 759 * 5529 * * * * * 5490 * * * 4279 * 3696 * 3826 72 0 * * * * * * 3536 0 0 D 73 * * 98 * * * * * * 3931 * * * * * * * * * * 73 0 * * * * * * 3536 0 0 L 74 * * * * * * * * * 63 * * * * * * * 4549 * * 74 0 * * * * * * 3536 0 0 T 75 2338 * 4955 3178 * 3920 * 3195 4279 * 4958 * * 5348 5681 1997 5856 4271 * 4764 75 0 * * * * * * 3536 0 0 P 76 1795 * * 4955 4616 * 4764 * 3117 5276 4478 3488 2760 4279 * 2967 * * * * 76 0 * * * * * * 3536 0 0 A 77 402 * * * * * * 4955 * * * * * 3826 * 3225 * 4908 * * 77 0 * * * * * * 3536 0 0 L 78 * * * * * * * * * 169 * * * * * 5519 * 3494 * * 78 67 4468 * 0 * * * 3536 1000 0 S 79 2076 * * 3696 * 3609 * * 2049 * * 3301 * 3939 3496 3229 * * * * 79 0 * * * * * * 3536 0 0 E 80 4616 * 1814 855 * * * * 4279 * * * * 3826 * * * * * * 80 0 * * * * * * 3536 0 0 Y 81 * * * * * * 2959 * * * 4727 * * 4616 2911 * * 4666 * 688 81 0 * * * * * * 3536 0 0 G 82 * * * * * 0 * * * * * * * * * * * * * * 82 0 * * * * * * 3536 0 0 I 83 * * * * * * * 867 * 2531 5715 * * * * * * 1945 * * 83 0 * * * * * * 3520 0 0 N 84 * * 3396 4713 * * 3136 * * * * 716 * * * 3882 3708 * * * 84 0 * * * * * * 3520 0 0 V 85 5663 * * * * * * 1335 * 2225 5280 * * * * 5435 * 1639 * * 85 0 * * * * * * 3529 0 0 K 86 * * * * * * * * 896 * * * * 3750 1365 * * * * * 86 0 * * 0 * * * 2855 0 0 //