HHsearch 1.5 NAME c4wlpB_ FAM FILE c4wlpB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4wlpB_.a3m DATE Sat Mar 7 08:17:37 2015 LENG 114 match states, 114 columns in multiple alignment FILT 34 out of 38 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.5 EVD 0.3715 -2.3638 SEQ >ss_dssp CCGGGSHHHHHHHTSHHHHHHSCTHHHHHHHHHHSCCCSSSHHHHHHHHHHHHHHTCCSSSSCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHTC >sa_dssp EEEDDDDEDBCEDDCDCDCDEDDCEEDCEDDCDECEECEEECEECBDECBDCCCECEEDEECBDCDDCADCDEECCDDEEDCEEDEECEEDEEEEDDDDC EEEEEEDEEDEEEE >ss_pred CCHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHCC >ss_conf 9022498999999838999973699999999986888874304669999999956898867897999999973789981499999999999999999999 99999999998329 >Consensus xxlxexpxifxeVlSxxtWxxxLsexeRxxLxxfLPxxxxxxxxxxxxtlxxLfxGxnfxFGnPlxxxxxxLkxGxxxPxvxxxRxxxxxxxrrxyxxxl xxYxxxllkxxxxS >c4wlpB_ EDLLEDPEIFFDVVSLSTWQEVLSDSQREHLQQFLPQFPEDSAEQQNELILALFSGENFRFGNPLHIAQKLFRDGHFNPEVVKYRQLCFKSQYKRYLNSQ QQYFHRLLKQILAS >UniRef50_UPI0001926C7D(14-132:1033) PREDICTED: similar to Nuclear factor related to kappa-B-binding protein n=1 Tax=Hydra magnipapillata RepID=UPI0001926C7D E=2e-26 s/c=1.01 id=33% cov=100% EELVQSEEIFREVLK-KGIQESLNDTEKRHLMCFLPSSGKTETENvdllfFEETLNKVFEGsSNFKHGDPLKHAYLKLQSGLLTPKVIELQKKCLKLKEK NYKLNQKEYYKNLLEEIILS >UniRef50_Q9Y0Z1(118-235:1658) CG11970 n=10 Tax=Drosophila RepID=Q9Y0Z1_DROME E=8e-26 s/c=1.00 id=34% cov=97% --LCENAAIFHEFFSLETWQQ-LPHHLQARLQPMLPDFsrlvsgqAQACAEQQRTLVQ-LFNGGLQRFGqSPLLQLQRQLEEGNLRPDVLQLRRSIQHSG RREFRFQQAERLSLLAKELFMS >UniRef50_Q4H347(17-133:742) Nuclear factor related to kappaB binding protein n=2 Tax=Ciona intestinalis RepID=Q4H347_CIOIN E=7e-24 s/c=0.95 id=34% cov=96% --LVENPSLLKEVLTMDVW-ETLSDEHRKCLSETLPEFMTED--DRTETVRLLLTGEdlsqfpevNTGSGNPLSKFVEKLNDGYFTSNAYRLRKSYKRAI KAKSMLSKHQYFHQLLKDIVVS >UniRef50_C1E3D4(25-140:330) Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E3D4_9CHLO E=1e-08 s/c=0.53 id=31% cov=91% -----DPSVpMSSVLSARTWQEQLSADERASLRRFLPD-PTASEEDVRALVAALFGDGdgdgdgggdthvNMHFGNPAERVWREIQARERDPEVMAHRNA IGVVERGAHELEVRLHHARVAR----- >UniRef50_A8Q063(41-151:315) Putative uncharacterized protein n=1 Tax=Brugia malayi RepID=A8Q063_BRUMA E=3e-08 s/c=0.54 id=28% cov=97% --IVEQETVFRAVVTKHAFRSLGTDTQ-NYLKRFLPKY-EGSSKDEEQILDIVFTADpNLYFGNPLGKLHSKIRCGWFNPERPSDQVQLRDNRRVLYDHY IRHYYMTVLKSLLIS >UniRef50_A0CQI3(90-173:486) Chromosome undetermined scaffold_24, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0CQI3_PARTE E=0.0001 s/c=0.56 id=27% cov=73% -----------QVFSVEN----FTKQEIDSLCCLLPEADLQLFQDVIE------GTKNFHFGNPLNIFLTKMKSGYFT----RNKEICEKLEQKISRNHL NEYYSNL------- >UniRef50_B9I980(66-172:619) Predicted protein n=3 Tax=Malpighiales RepID=B9I980_POPTR E=6e-33 s/c=1.32 id=29% cov=95% -ELYDLPD-LREILSLDTWNLCLTEEERFHLSAYLPDMDQETF---CLTMKELFDGSEIYFGNPLDKFFKKLKAGFYPPKVACFREGLQFLQRKQYYHSL RAYHDRMIQKFI-- >UniRef50_B9RGW7(99-207:858) Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9RGW7_RICCO E=8e-23 s/c=0.99 id=32% cov=82% -----------EILSYEVWKTHLSESERKYLMQFLPR-----GSDGDKVVQALLTGDNFHFGNPYLKWQvlkyddsitlegASVCSGKLHPDAVVHQEQC IKADKKAYYSEIQNYHNDMIR----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * 1707 528 * * * * * * * * * * * * * * * * 1 0 * * * * * * 2235 0 0 D 2 * * 1272 772 * * * * * * * * * * * * * * * * 2 0 * * * * * * 2424 0 0 L 3 * * * * * * * 3021 * 532 2434 * * * * * * * * * 3 0 * * * * * * 3735 0 0 L 4 3551 1782 * * * * * 5357 * 2915 * * * * * * * 1599 * 2870 4 0 * * * * * * 3735 0 0 E 5 * * 2870 658 * * * * * * * * * 2916 * * 3363 * * * 5 0 * * * * * * 3735 0 0 D 6 * * 1732 * * * * * * 3020 * 1832 * 3196 * 3316 * 3551 * * 6 0 * * * * * * 3951 0 0 P 7 2730 * * 1974 * * * * * * * * 750 * * * * * * * 7 0 * * * * * * 4098 0 0 E 8 3586 * 2036 1929 * 3846 * * * * * * * * * 2040 3360 * * * 8 160 * 3252 * * * * 4098 0 0 I 9 * * * * * * * 1342 * 2555 * * * 3528 * * * 1520 * * 9 152 3320 * 0 * 0 * 3975 1000 1144 F 10 * * * * 885 * * * * 1404 3630 * * * * * * * * * 10 0 * * * * * * 4234 0 0 F 11 * * * 2299 2900 * 3790 * 2377 * * 4604 * 4461 2116 3630 * * * * 11 80 4215 * 2322 322 * * 4234 1000 0 D 12 3819 * 1996 970 * * * * * * * * * 3413 * 4007 6418 * * * 12 57 4690 * 2585 263 * * 4457 1000 0 V 13 * * * * 2864 * * 2113 * 4765 * * * * * * * 750 * * 13 0 * * * * * * 4644 0 0 V 14 * * * * 2170 * * * * 727 * * * * * * * 2526 * * 14 0 * * * * * * 4644 0 0 S 15 * * 4511 * * 4242 * * 4146 * * * * * * 454 3099 * * * 15 84 * 4146 * * * * 4644 0 0 L 16 4399 * * * 5174 * * 4534 3868 1506 3539 4882 * * 4917 * * 2008 * 4075 16 0 * * * * 0 * 4526 0 1000 S 17 * * 1632 1709 * * 4010 * 4146 * * 2842 * * 4458 3877 * * * * 17 0 * * * * * * 4644 0 0 T 18 3562 * * * * 4146 * * * * * 4654 * * * 4765 1030 1773 * * 18 58 * 4654 * * * * 4644 0 0 W 19 * * * * 3948 * * 4093 * 4381 * * * * * * * * 271 * 19 145 * 3384 * * * 0 4584 0 1000 Q 20 * * * * * * * * 3866 * * 1356 * 1645 2579 * 4222 * * * 20 0 * * * * 493 1788 4406 0 2055 E 21 * * 3131 2093 * * * * * 4554 * 3845 * 4200 * 1674 3630 4685 * 4270 21 146 * 3374 * * * 0 4584 0 1000 V 22 * 1615 * * * * 3426 * * 2474 * * * 4241 * 3972 4008 2172 * * 22 0 * * * * 0 * 4375 0 2062 L 23 * * * * 4654 4010 * * * 155 * * * * * * * * * * 23 0 * * * * * * 4644 0 0 S 24 * * 4242 * * 4511 * * 6910 * * 4146 4249 * * 1183 1533 * * * 24 0 * * * * * * 4644 0 0 D 25 3710 * 1499 1349 * * 4249 * 3580 * * * 4612 * * * * * * * 25 0 * * * * * * 4644 0 0 S 26 4242 * 2195 1896 * 4948 4249 * 4262 * * * * 3708 * 2967 3077 * * * 26 0 * * * * * * 4644 0 0 Q 27 * * 2368 993 * * 3990 * * 4249 * * * 2408 * * * * * * 27 92 * 4010 * * * * 4644 0 0 R 28 * * * * * * * 4541 3018 4430 * * * 3347 538 * * * * * 28 0 * * * * 0 * 4452 0 1000 E 29 2382 * 3914 3196 2417 * * * 3592 3973 6910 3030 * 3164 4146 * * * * * 29 0 * * * * * * 4644 0 0 H 30 * 4194 * 5827 4019 * 1920 * * 5231 * 4029 * * 3093 1992 * * * 2782 30 0 * * * * * * 4644 0 0 L 31 * * * * * * * * * 0 * * * * * * * * * * 31 0 * * * * * * 4644 0 0 Q 32 2553 4654 * * * * * * 2586 * 3560 * * 3051 2517 2480 3967 * * * 32 0 * * * * * * 4644 0 0 Q 33 2663 3039 * 4194 * * * * 2765 4308 * 4765 4249 2164 3217 4376 * * * * 33 0 * * * * * * 4644 0 0 F 34 * * * * 907 * 4308 * * 3235 4249 * * * * * 4194 * * 2301 34 0 * * * * * * 4644 0 0 L 35 * * * * * * * * * 0 * * * * * * * * * * 35 0 * * * * * * 4644 0 0 P 36 * * * * * * * * * * * * 0 * * * * * * * 36 117 * 3685 * * * * 4644 0 0 Q 37 * * 1381 2844 * * * * 3941 * * * * 3689 3474 3291 3225 4834 * * 37 323 * 2319 * * * 0 4606 0 1604 F 38 2872 * * * 1440 * * 5334 * 5405 2116 * * * * 3832 * 4042 * 3557 38 241 3864 3557 2807 222 1291 758 4290 1000 2774 P 39 3950 * 1353 4316 * 3724 * * * * 3855 * 1520 * * * * * * * 39 0 * * * * 1046 955 4188 0 2540 E 40 4074 * 3741 2399 * * * 4121 3991 4472 * * 5016 1458 * * 3110 * * * 40 35 * 5369 * * * 0 4490 0 1544 D 41 3135 * 3402 1913 * 3791 * * * 5075 * 3004 4062 2679 * * 3980 * * 5638 41 0 * * * * 2590 262 4483 0 2001 S 42 * 4112 1695 4024 * 4834 * * * 4525 * 4747 * * * 2374 1926 * * * 42 90 * 4049 * * 614 1529 4549 0 1956 A 43 2499 * * 2738 1723 3003 * * * 4673 * * * * * 3177 3386 * * * 43 77 * 4275 * * 1000 1000 4510 0 1708 E 44 4345 * 5125 1581 * * 4036 * 3876 4029 3183 4832 * 4501 * 4963 * 3313 5026 4485 44 209 * 2891 * * 1357 714 4512 0 1838 Q 45 * * 1376 3498 * 4938 * * * * * 3305 * 2306 2948 * 5022 5070 * * 45 353 3949 2714 2322 322 1705 529 4507 1000 2253 Q 46 * * * 3756 2298 3814 * 3932 3314 * * * * 2375 3904 4591 4773 2759 * * 46 0 * * * * 2160 365 4566 0 2050 N 47 * 4879 4898 1610 4555 * 4010 4430 3787 * * 2914 * 4922 3121 4744 3978 * * * 47 0 * * * * 1431 669 4600 0 1885 E 48 4316 * 3025 1670 * * * 4526 3915 3555 * * * 2887 * * 3192 3774 * * 48 65 * 4496 * * 0 * 4628 0 1548 L 49 * * * * * * * 3362 * 2429 * * * * * * 745 3057 * * 49 0 * * * * * 0 4579 0 1000 I 50 * * * * * * * 3517 * 1232 2451 * * * * * * 1717 * * 50 0 * * * * * 0 4579 0 1000 L 51 3135 * 3948 5107 * * * * 1744 5133 * 4085 * 2286 2473 * * 5567 * * 51 81 * 4193 * * * 0 4579 0 1000 A 52 2277 * 4220 1831 * * * 3913 3043 4016 3430 * * * 4387 3861 * * * * 52 0 * * * * 827 1197 4450 0 1629 L 53 * * * * * * * * * 191 * * * * * * * 3015 * * 53 0 * * * * * 0 4579 0 1000 F 54 * * * * 586 * * * * 1583 * * * * * * * * * * 54 0 * * * * 0 * 4579 0 1000 S 55 2967 * 3681 3072 * 2558 * * * * * 3419 * * 3898 2607 2468 * * * 55 0 * * * * * * 4640 0 0 G 56 4011 * 4470 * * 397 * * * * * * * * 4618 * 3431 * * * 56 84 4138 * 0 * * * 4640 1000 0 E 57 5293 4063 2127 2079 * 3085 * * 4649 * * * 4242 3083 * 3054 * * * * 57 257 2617 * 2677 245 * * 4640 2252 0 N 58 4612 * 4520 5640 * 4242 * 4321 * 4244 * 602 * * * 3627 * * * * 58 78 4242 * 3322 152 * * 4640 1000 0 F 59 * * * * 612 * * 4556 * 3202 3539 * * 4244 * * 4163 * * * 59 0 * * * * * * 4640 0 0 R 60 * * * * 3565 4163 1272 * 2536 * * * * 5846 2754 * * * * 3216 60 0 * * * * * * 4640 0 0 F 61 * * * * 172 * 4138 * * * * * * * * 4163 * * * * 61 0 * * * * * * 4640 0 0 G 62 * * * * * 74 * * * * * * * * * * 4321 * * * 62 207 2903 * 0 * * * 4640 2060 0 N 63 * * 4138 * * * * * * * * 904 * * * 1290 * * * * 63 0 * * * * * * 4640 0 0 P 64 * * 4242 * * * * * * * * * 78 * * * * * * * 64 0 * * * * * * 4640 0 0 L 65 3351 * * 5293 5232 * * 3374 * 776 5358 * * * * 4948 * 3568 * 5143 65 0 * * * * * * 4640 0 0 H 66 5000 * 2940 4470 * 4011 4087 * 2662 2570 * 2960 * 5034 5620 4163 3835 4618 * * 66 0 * * * * * * 4640 0 0 I 67 5000 * 3070 4496 * * 4138 3045 1666 * * * * 4244 2985 3434 4618 * * * 67 0 * * * * * * 4640 0 0 A 68 2569 * * * 1404 * * * * 1772 * * * * * * * 4470 3112 * 68 0 * * * * * * 4640 0 0 Q 69 * * * * 1629 3517 3341 * * 3570 * * * 2553 * * * 4163 3351 3603 69 41 5143 * 3585 126 * * 4640 1000 0 K 70 3587 * 3216 2807 * * 4584 * 2890 3696 * 3985 * 3959 2730 4011 3791 * * * 70 0 * * * * * * 4640 0 0 L 71 4948 * * 3351 * 4612 * * 1664 4087 3370 3916 * 3586 3002 3587 * * * * 71 0 * * * * * * 4640 0 0 F 72 * 4496 * * 4087 * * 3222 * 652 3431 * * * * * * 4042 * * 72 0 * * * * * * 4640 0 0 R 73 * 3112 * 4244 * * * * 1427 5293 * 3362 * 2809 2525 5604 * * * * 73 0 * * * * * * 4640 0 0 D 74 3096 4017 2650 4272 * 1664 * * * * * 4637 * * * 1975 * * * * 74 0 * * * * * * 4643 0 0 G 75 * * * * * 147 * * * * * * * * 3363 * * * * * 75 0 * * * * * * 4643 0 0 H 76 * * 5249 3363 3765 * 2904 * 4051 2004 * 3646 * 5313 * 3871 * * 4017 3006 76 0 * * * * * * 4643 0 0 F 77 4955 2500 * * 1617 * * * * 2183 * * * * 3363 * * * * 2759 77 0 * * * * * * 4643 0 0 N 78 * * 3720 3380 5071 * 2206 * * * * 3069 4572 * 2966 4023 2183 * * 6554 78 126 * 3581 * * * * 4643 0 0 P 79 * * * * * * * * * * * * 89 * * 4071 * * * * 79 0 * * * * * 0 4491 0 1472 E 80 4939 * 1845 1951 * * * * 2893 * * 4071 * 4528 2373 * * * * * 80 0 * * * * * 0 4491 0 1472 V 81 3081 * * * * * * 3361 * * * 4083 * 4813 3894 4107 * 825 * * 81 0 * * * * * 0 4491 0 1472 V 82 2060 * * * * * * 3364 * 4138 3246 5455 3894 * * 3067 5242 2283 * 4071 82 0 * * * * 0 * 4491 0 1472 K 83 4478 4474 * 4155 * * 4637 * 3265 2462 * * * 3142 2142 4017 4503 4051 5492 * 83 0 * * * * * * 4643 0 0 Y 84 4023 5154 4017 * 3895 * 3776 * * 2101 3642 4664 * * * 4095 * * * 1751 84 0 * * * * * * 4643 0 0 R 85 * * * * * * * * 2579 5313 * * * 2522 659 * * * * * 85 0 * * * * * * 4643 0 0 Q 86 3608 4637 5656 1352 * * * * 3034 * * 4478 * 3076 3595 4796 * 4017 * * 86 0 * * * * * * 4643 0 0 L 87 3363 * * 4955 * 2035 * 4664 3542 2281 * * * 2408 * 3223 * * * * 87 0 * * * * * * 4643 0 0 C 88 * 1836 * 4503 * * 5154 2747 * 1635 4637 * * * 5313 * 5012 5312 * 4177 88 0 * * * * * * 4643 0 0 F 89 4257 * * 4664 5237 4478 * 5152 2783 2526 3528 3818 * 2488 2957 5313 * * * * 89 0 * * * * * * 4643 0 0 K 90 * * 4017 * 2744 * 4272 5582 1473 5313 4620 * * * 2508 5656 * 4478 * 4328 90 0 * * * * * * 4643 0 0 S 91 1970 * * * 3058 * * 4503 * 2268 * 4017 * * * 2784 5249 2841 * * 91 0 * * * * * * 4643 0 0 Q 92 * * 3499 2129 * 4272 * 4177 3039 4031 * 5249 * 1714 4017 * * * * * 92 0 * * * * * * 4643 0 0 Y 93 * * * 4155 * * * * 1960 * * * * 4076 917 * * * * 3354 93 0 * * * * * * 4643 0 0 K 94 4177 * * * * 3363 * 5492 1475 * * * * * 1401 * 5313 4017 * * 94 0 * * * * * * 4643 0 0 R 95 2477 * 5071 2754 * * * 4664 2654 4017 4503 4155 * 2934 2726 * * * * * 95 0 * * * * * * 4643 0 0 Y 96 4503 * * * 3646 * 1668 * * * * * * * * 3400 * * * 1100 96 0 * * * * * * 4643 0 0 L 97 * * 4017 3363 * * * * 3542 3300 4177 * * * 2490 * * * * 1250 97 0 * * * * * * 4643 0 0 N 98 * * * 4637 3617 * 1765 * 4796 2371 * 3922 * 4503 * 3499 5016 * * 2994 98 0 * * * * * * 4643 0 0 S 99 * * * 2722 4023 * 4664 5656 5154 3310 * 3007 * 3285 4617 2286 4503 * 5644 4017 99 0 * * * * * * 4643 0 0 Q 100 * * * * * * * 3475 4177 1072 * * * 2049 4637 * 4257 4478 * * 100 0 * * * * * * 4643 0 0 Q 101 4272 * * 4955 * * 4177 * 2473 * * 3581 * 2131 1439 * * * * * 101 0 * * * * * * 4643 0 0 Q 102 5658 * 5154 2763 4399 * 3164 4796 2461 3363 * 5152 * 3019 3523 4269 * * 4620 * 102 0 * * * * * * 4643 0 0 Y 103 4257 * * * 6554 * 2500 * * * * * * * 4272 * * * * 497 103 0 * * * * * * 4643 0 0 F 104 * 4637 * * 3149 * 1163 * * 4272 * 4796 * 3818 * * * * * 2048 104 0 * * * * * * 4643 0 0 H 105 4478 * 3271 3851 3714 * 3149 5154 4155 * 4017 1818 * 4012 6554 3455 * * * * 105 0 * * * * * * 4643 0 0 R 106 * * 2401 4621 * 4583 4301 * 3512 4252 * 2806 * 4149 2775 3168 3632 * * * 106 0 * * * * * * 4631 0 0 L 107 * * * * 5270 * * 4841 * 1425 1473 * * * * * 4483 2628 * * 107 0 * * * * * * 4631 0 0 L 108 2663 * * * * * * 2546 * 1263 * * * * * * 5424 2115 * * 108 0 * * * * * * 4568 0 0 K 109 5092 * * 3850 5038 5151 * * 1264 4073 * * * 3788 1944 4847 * * * * 109 0 * * * * * * 4476 0 0 Q 110 * * 2886 1681 * * * * 2232 * 4596 4252 * 3337 * 3336 4378 * * * 110 0 * * * * * * 4025 0 0 I 111 * * * * 2052 * * 1913 * 1771 * * * * * * * 2319 * * 111 0 * * * * * * 4025 0 0 L 112 * * * * 3202 * * 1268 * 1540 5406 * * * * * * 3203 * * 112 0 * * * * * * 3623 0 0 A 113 2710 * * * * * * 2116 * 2723 2961 * * * * 3200 * 2134 * * 113 0 * * * * * * 3385 0 0 S 114 * * * * * * * * * * * * * * * 0 * * * * 114 0 * * 0 * * * 3324 0 0 //