HHsearch 1.5 NAME c4wk1A_ FAM FILE c4wk1A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4wk1A_.a3m DATE Sat Nov 29 08:14:20 2014 LENG 92 match states, 92 columns in multiple alignment FILT 43 out of 47 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.3940 -0.4840 SEQ >ss_dssp CCSCTTCCEEEEEEEECHHHHHHHHHHHHHTTCCCEEEEEECTTTCCEEEEEEEEEEGGGHHHHHHHHHHHSCCCCCCEEEEEEECSCCCCC >sa_dssp EDCEEECEBCCACACADDECBEDACEDAEECEBEDEEDECECEEEEDDCBBADBDBCDECBEDADDBBEECACEEECCDEDEDDECEDDEEE >ss_pred CCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCC >ss_conf 97756888469999982410688999997659338998527741245877999995166689999999984004227718999879864029 >Consensus xxxxxxxxMKLiiaIVqdxdaxxlxxxLxexgxxxTkLsStGGFLkxGNtTlLiGvedexvxxvlxiIkxxcxxxVGGAtvFVlxvexfxkf >c4wk1A_ GLVPRGSHMKMIIAIVQDQDSQELADQLVKNNFRATKLATTGGFLRAGNTTFLCGVNDDRVDEILSVINQTCGNEVGGATVFVMPVDAFHQF >UniRef50_B8DZY6(1-107:108) Putative uncharacterized protein n=2 Tax=Dictyoglomus RepID=B8DZY6_DICTD E=8e-18 s/c=0.85 id=36% cov=91% --------MKLVFAIIQEEDWKKVREIFIEHNFSLTFFKSKGGFLEEGSVTLMTVVDDDRFEEVLTILRENCKERekmiipplpsvellrtvpmpvkikV GGAVVFAVDVSYFEK- >UniRef50_A8RED7(1-81:85) Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RED7_9FIRM E=6e-17 s/c=1.09 id=30% cov=88% --------MKLLVVMAGDDYAQPISDCVIEGGYHATTIGSSGEFLQYGKTVMLIGVENNQVQEVVTMIEKlNCHEEV---EIYVIPAYDFFK- >UniRef50_B5Y7S7(1-107:108) Putative uncharacterized protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7S7_COPPD E=3e-15 s/c=0.77 id=35% cov=91% --------MKLFITILQEEDYRVLAERLTEKGIYHTRIAGEGGFLGGRKVVLLSAVEDDAVNTMLAIIKESCSEReetilaeapsgfigmsipipmkvhT GGAVVMILPLDQIIK- >UniRef50_Q9KEA3(1-64:98) BH0950 protein n=3 Tax=Bacillus RepID=Q9KEA3_BACHD E=8e-12 s/c=1.11 id=37% cov=71% --------MKLLICIIDNFYADEVEKQLRDKGYRMTELASSGGFMKKGNTTFLFGLEEDDLPALRSALKEAC-------------------- >UniRef50_A8RXV4(4-107:115) Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RXV4_9CLOT E=0.0003 s/c=0.45 id=30% cov=83% -------DMNLMLIIVQENDAESLASAFKRSQIQATRIDAKGLVSSRKLNVFLVGTE--RTDEVLQLVSSNCKERameiedqeynghmfvdvqktivIGG ATIFIL-------- >UniRef50_Q8TV14(99-167:176) Predicted transcriptional regulator containing DNA-binding HTH domain n=1 Tax=Methanopyrus kandleri RepID=Q8TV14_METKA E=0.0003 s/c=0.67 id=24% cov=76% ----------LVIAIVPVDKSEDVINRLIQEGEGVTEMTGRGGYTGEEQSVLFIITEDEK--KVREIIEEEVGREV---PMFVM-------- >UniRef50_B0S2F5(1-90:90) Putative uncharacterized protein n=2 Tax=Finegoldia magna RepID=B0S2F5_FINM2 E=5e-16 s/c=0.95 id=38% cov=92% --------MKLIVVIMEDDLCHILSKELLENKISSTKLSSTGGFLKKGNTTMLIGTDVENEQFVLDIIKKVCDEndvesdNESKANVFVMDLEDFKKF >UniRef50_D1CGA8(8-111:122) Putative uncharacterized protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CGA8_THET1 E=2e-14 s/c=0.77 id=27% cov=88% -------NQKLVITVVQKDDGENVLNALHRDGYASLLISSSGGFLRRGNATILTLCSSEAVDKVIKIIADHASERTeikepnlgvqvsewyvpqsvkiqr GGASIWVLDAE----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 L 2 * * * * * * * * * 0 * * * * * * * * * * 2 0 * * * * * * 1000 0 0 V 3 * * * * * * * * * * * * * * * * * 0 * * 3 0 * * * * * * 1000 0 0 P 4 * * * * * * * * * * * * 0 * * * * * * * 4 0 * * * * * * 1000 0 0 R 5 * * * * * * * * * * * * * * 0 * * * * * 5 0 * * * * * * 1000 0 0 G 6 * * * * * 0 * * * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 S 7 * * * * * * * * * * * * * * * 0 * * * * 7 0 * * * * * * 1000 0 0 H 8 * * 1927 * * * 2051 * * * * 1013 * * * * * * * * 8 0 * * * * * * 2320 0 0 M 9 * * * * * * * * * * 77 * * 4267 * * * * * * 9 0 * * * * * * 3767 0 0 K 10 * * * * * * * * 127 * * 4303 * * 4896 * * * * * 10 0 * * * * * * 3758 0 0 M 11 * * * * * * * * * 229 2770 * * * * * * * * * 11 0 * * * * * * 3840 0 0 I 12 * * * * 4833 * * 998 * 2686 3861 * * * * * * 2058 * * 12 0 * * * * * * 3840 0 0 I 13 * * * * 3667 * * 1032 * 2556 4479 * * * * * 5506 2505 * 5687 13 0 * * * * * * 3840 0 0 A 14 715 4483 * * 4996 * * 4406 * * * * * * * 4161 3328 3155 * * 14 0 * * * * * * 3840 0 0 I 15 * * * * * * * 523 * * 4532 * * * * * * 1940 * * 15 0 * * * * * * 3840 0 0 V 16 4532 * * * * * * 3036 * 3249 4684 * * * * * 4996 601 * * 16 0 * * * * * * 3840 0 0 Q 17 * 5383 5436 3831 * 4003 3534 * 5392 * * 5935 4555 925 4154 3870 * * * * 17 0 * * * * * * 3840 0 0 D 18 * * 1086 3136 * * * * 3187 * * 2820 * * 5628 3307 * 4555 * * 18 0 * * * * * * 3840 0 0 Q 19 3825 * 1861 2192 5436 * 3910 * 3048 * * 4406 * 3424 5531 * 5219 4795 * * 19 0 * * * * * * 3840 0 0 D 20 * * 554 * 5074 * 4996 5339 4555 4684 * 5687 * * * * * * * 2917 20 0 * * * * * * 3840 0 0 S 21 1183 4684 * 3638 * 4358 * 5074 5383 * * * * * 4340 2486 5506 5548 4988 4833 21 0 * * * * * * 3840 0 0 Q 22 3746 * 2389 2519 * 4134 4684 6198 4988 5486 * 2523 5988 3229 4833 * * * * 3938 22 0 * * * * * * 3840 0 0 E 23 4180 * 2139 4051 6079 4672 * 4684 2943 * * 3236 3511 * 3598 3536 5651 4833 * 5895 23 0 * * * * * * 3840 0 0 L 24 * * * * * 4996 * 3430 * 1142 4502 * * * * * 3834 1697 * * 24 0 * * * * * * 3840 0 0 A 25 3363 * * 3482 * * * 1810 * 3169 * 4374 * 4810 4020 2905 5509 3107 * * 25 0 * * * * * * 3840 0 0 D 26 4468 * 2441 2055 * 5384 * * 3007 5219 * 2857 * 4176 5413 3370 5490 * * 5706 26 0 * * * * * * 3840 0 0 Q 27 1625 4532 5548 2533 * 4685 * 4988 5531 * * * * 3752 2661 3683 6299 5413 * * 27 0 * * * * * * 3840 0 0 L 28 * * * * 2496 * * * * 359 * * * * * * * 4532 * * 28 0 * * * * * * 3840 0 0 V 29 * * * * * 5473 4358 2304 3861 3454 * 2644 * * 5436 3967 2345 3031 * * 29 0 * * * * * * 3840 0 0 K 30 4278 * 3214 1205 * * * 5486 3158 * * 4511 * 3624 3084 * 5074 * * * 30 0 * * * * * * 3840 0 0 N 31 3092 * 4358 2651 * 3793 3142 * 2845 * * 2037 * 5895 5463 3898 * * * * 31 0 * * * * * * 3840 0 0 N 32 5413 * 4578 * * 952 4532 * 3204 * * 2884 * 3840 * 4042 * * * * 32 0 * * * * * * 3840 0 0 F 33 * * * 4555 1490 * 5628 2044 * 5509 * * * * * * * 4518 * 1872 33 0 * * * * * * 3840 0 0 R 34 4358 * * 5413 3002 3698 4532 * * * 5486 * 4134 3990 1510 3257 * * * 3562 34 0 * * * * * * 3840 0 0 A 35 1821 * * * * * 4833 5548 * 4988 3895 * * * * 3273 4589 1262 * * 35 0 * * * * * * 3840 0 0 T 36 * * * * * * * * * 4358 * * * * * * 72 * * * 36 0 * * * * * * 3840 0 0 K 37 * * * 2902 4988 * * 5219 1269 4358 * * * * 1732 * 4532 * * * 37 0 * * * * * * 3840 0 0 L 38 * * * * 4020 * * 1830 * 702 4555 * * * * * * * * * 38 0 * * * * * * 3840 0 0 A 39 1359 5674 4418 * 5956 4542 * * 4997 * * * * * * 1464 3960 * * 5234 39 0 * * * * * * 3839 0 0 T 40 4418 * * * * 3694 * * * * * * * * * 736 1859 * * * 40 0 * * * * * * 3839 0 0 T 41 * * * 4186 * * * * 3365 * 5726 5060 * 5510 4560 2300 911 * * * 41 0 * * * * * * 3839 0 0 G 42 * * * * * 0 * * * * * * * * * * * * * * 42 0 * * * * * * 3839 0 0 G 43 5391 * * 4542 * 243 * * * 4418 * * * * * 4586 * * * * 43 0 * * * * * * 3839 0 0 F 44 * * * * 173 * * * * 5391 * * * * * * * 4418 * 4560 44 0 * * * * * * 3839 0 0 L 45 * * * * 4219 * * * * 300 5453 * * * 5504 4418 4560 * * * 45 0 * * * * * * 3839 0 0 R 46 * * * 4997 * 3694 * * 1342 * * 5234 * 4069 1458 4418 * * * * 46 0 * * * * * * 3839 0 0 A 47 3355 * * 2441 * 4842 5398 * 2337 * * * * 5400 2177 2906 4625 * * 4542 47 0 * * * * * * 3839 0 0 G 48 * * * 3916 * 422 * * 3165 * * * * * 4842 5510 * 5722 * * 48 0 * * * * * * 3839 0 0 N 49 * * * * * * * * 3684 4418 * 520 * 4560 * 3196 5234 * * * 49 0 * * * * * * 3839 0 0 T 50 2884 * 5510 * * * * * * * * 4418 * * * 3980 691 3148 * * 50 0 * * * * * * 3839 0 0 T 51 * * * * * * * * * * * * * * * 4395 348 2582 * * 51 0 * * * * * * 3839 0 0 F 52 * * * * 1700 * * 3398 * 1040 3624 * * * * * * * * 5060 52 0 * * * * * * 3839 0 0 L 53 * * * * 3788 * * 4234 * 589 2253 * * * * * * * * * 53 0 * * * * * * 3839 0 0 C 54 * 6079 * * 4500 * * 967 * 2699 * * * * * 3827 3653 2994 * * 54 0 * * * * * * 3839 0 0 G 55 3227 * * * * 416 * 4560 * 4376 * * * * * * * 4227 * * 55 0 * * * * * * 3839 0 0 V 56 3924 3694 * * * * * 2840 * 5453 * * * * * * 2306 1023 * * 56 0 * * * * * * 3839 0 0 N 57 * * 2489 844 * * * * 3043 * * 4308 5430 * 5529 4376 * * * * 57 69 * 4418 * * * * 3839 0 0 D 58 * * 705 2341 * * * * 6455 * * 3475 * * * 4349 * 4692 * * 58 0 * * * * * 0 3745 0 1000 D 59 5681 * 1981 1148 * * 4328 5341 * * * 2608 * * * 5911 * * * 5587 59 0 * * * * 0 * 3745 0 1000 R 60 3590 * 3496 4360 * * 6522 * 2054 * * 4079 * 2162 2254 * * 4812 * * 60 63 * 4560 * * * * 3839 0 0 V 61 * * * 4674 3932 * * 3962 * 2937 * * * * * * 3758 762 * 4762 61 0 * * * * * 0 3764 0 1000 D 62 5452 * 1434 2282 * * * * 5050 * * 3766 3290 2741 * 5685 5235 * * * 62 0 * * * * 0 * 3764 0 1000 E 63 3891 * 3804 1546 4710 * * * 2239 4578 * * 4656 6215 3297 * 3799 * * * 63 0 * * * * * * 3839 0 0 I 64 2440 4754 * * 4812 * * 3465 * 3675 4842 * * * * * 5060 973 * * 64 0 * * * * * * 3839 0 0 L 65 * 5400 * 5102 * * 5000 2828 3552 930 4812 * * 5548 3938 * * 4542 * * 65 0 * * * * * * 3839 0 0 S 66 3854 * 2292 2166 * 5400 * * 2681 * * 5548 * 3555 5430 3055 3752 * * * 66 30 5626 * 3170 170 * * 3839 1000 0 V 67 4490 * * * * * 5430 784 * 2626 3889 * * * 5504 * * 3324 * * 67 0 * * * * * * 3839 0 0 I 68 * * * * 5102 * * 514 * 3300 4089 * * * * * * 3180 * * 68 36 5346 * 2585 263 * * 3839 1000 0 N 69 4376 * * 3039 * * * * 1079 * * 4835 * 3712 2501 3863 * * * * 69 43 5102 * 3322 152 * * 3839 1000 0 Q 70 4808 * 4020 1464 * 5529 * * 2142 * * 4928 * 3250 4182 3706 5479 * * * 70 63 4542 * 0 * * * 3839 1000 0 T 71 3436 * 5577 3714 * * 3196 4526 3805 * 4554 1885 * 5398 5479 4842 3229 3549 * * 71 35 5389 * 3807 107 * * 3839 1077 0 C 72 2819 1051 * * * 4238 * 5626 * * * * * * * 2259 * 3418 * * 72 34 5430 * 0 * * * 3839 1000 0 G 73 5515 * 3959 * * 2318 3587 * 2131 * * * 4962 5375 3202 2199 * * * 5711 73 134 4147 4962 3817 106 * * 3799 1591 0 N 74 3798 * 5051 1827 4957 * 5163 * 3096 * * 3842 5465 4609 3196 3947 2924 * * * 74 621 1516 * 4393 70 * 0 3768 2897 1000 E 75 * * 5576 1530 * * * * 3425 * * 4607 * 3322 1327 * * * * * 75 616 1524 * 4579 62 * 0 3768 2937 1000 V 76 * * * 4607 * * * 3749 * * 5163 * * 5125 * 5286 3162 534 * * 76 261 3821 3400 4624 60 * 0 3768 1555 1000 G 77 3378 * * * * 218 * * * * * * * * * 4500 * * * * 77 42 5124 * 3700 115 1580 587 3605 1000 2106 G 78 5250 * * * * 194 * * 4595 * * 5040 * * * 5174 * * * * 78 0 * * * * * 0 3638 0 1694 A 79 275 4946 * * * * * * * * * * * * * 4361 3941 5180 * * 79 0 * * * * 0 * 3638 0 1694 T 80 * * * 4430 * * * * * 4962 * 4741 4587 * * 4408 676 2559 * * 80 0 * * * * * * 3799 0 0 V 81 4962 * * * * * * 1456 * * 2969 * * * * * * 1072 * * 81 0 * * * * * * 3799 0 0 F 82 * * * * 384 * * 3994 * 5850 4789 * * * * * * * 4408 3827 82 0 * * * * * * 3799 0 0 V 83 4884 * * * * * * 2278 * 5417 * * * * * * 4154 556 * * 83 0 * * * * * * 3799 0 0 M 84 * * * * * * * 2856 * 843 2429 * * 5375 * * * 3399 * * 84 0 * * * * * * 3799 0 0 P 85 * * 1541 5249 * 4134 * * * * * 2276 1706 * * 4056 * * * * 85 0 * * * * * * 3636 0 0 V 86 3299 * * * * * * 3349 * 2451 3970 * * * * * * 853 * * 86 0 * * * * * * 3636 0 0 D 87 * * 1998 772 * * * * * * * * * 5074 * 4723 * 4464 * 4291 87 0 * * * * * * 3636 0 0 A 88 5667 * 2541 3225 * * * * 2856 * * 4146 * 1933 3029 4406 4847 * * 4622 88 0 * * * * * * 3556 0 0 F 89 * 5150 * * 843 * * 4356 * 4847 3597 * * * * 4740 * 4914 * 2494 89 0 * * * * * * 3556 0 0 H 90 4847 * * 2127 4199 * 3343 2611 2983 3231 5507 * * 4288 * * * 4428 * 3902 90 0 * * * * * * 3556 0 0 Q 91 * * * * * * 5751 * 739 * * * * 3074 1924 * * * * * 91 0 * * * * * * 3556 0 0 F 92 * * * * 109 * * * * * * * * * * * * * * 3786 92 0 * * 0 * * * 2799 0 0 //