HHsearch 1.5 NAME c4v1ap_ FAM FILE c4v1ap_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4v1ap_.a3m DATE Sat Oct 11 08:31:04 2014 LENG 97 match states, 97 columns in multiple alignment FILT 38 out of 42 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.9 EVD 0.4152 -0.0492 SEQ >ss_dssp CHHHHTTCGGGEEEEEEEECTTSTTTHHHHHHHHHHSCHHHHHHCSSCEEEEEECSSCCCCEEEEEETTTEEEEEECSSCCHHHHHHHHHHHHTTCC >sa_dssp EDEBCEDDBEDADCADACBBCEDEDBEBBDDACEBBDCEEBEDDBEEBDDDDDEDEEDDEBCABADAEEEDECDBEBDEDDCEDACEDBCECACEDE >ss_pred CCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCC >ss_conf 9610001135478999998698752699999999747978886198968998640389984599995589799984156889999999998662179 >Consensus axxxxxxxLkxvKxIxvxFxPfxxxxxsaRxFlxxixsxkxrxsNPxxxvxxxixxdxxxPxIxvxfxdGxkxxfxxxnlxxxEixxxfxxhxxxxx >c4v1ap_ AAALARLGLRAVKQVRVQFCPFEKNVESTRTFLQAVSSEKVRCTNLNCSVIADVRHDGSEPCVDVLFGDGHRLIMRGAHLTAQEMLTAFASHIQARG >UniRef50_B8C2B5(14-92:115) Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C2B5_THAPS E=5e-05 s/c=0.62 id=22% cov=82% --------IKYIRTVDISFNPFDMRTRSARELLRQINVDRYRRANPKLKIKTNILSTPHAPSVKFAFVDGTDKNFDSKEFLADEMLM---------- >UniRef50_A8PGB8(21-105:124) GM05817p, putative n=1 Tax=Brugia malayi RepID=A8PGB8_BRUMA E=7e-20 s/c=1.15 id=28% cov=89% ALAIRGVDLKNVKSIHFSFNPFYGN------FWFLISSPYVRRTNPMTTMDCNIRNDRQPPYFCANLNDGKKLLFRTSGMHVMDLTMTFNR------ >UniRef50_A8IEZ1(2-87:115) Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8IEZ1_CHLRE E=2e-06 s/c=0.63 id=28% cov=80% --------LKHLKKVFVSFTPGDLRAASARELLQRASSNAAKKSNPACVVEFNVDEQGLSgrAYVDLTFADNESRRVQTAEMSVEDI------------ >UniRef50_B6KSU4(13-95:119) Putative uncharacterized protein n=3 Tax=Toxoplasma gondii RepID=B6KSU4_TOXGO E=8e-16 s/c=1.02 id=20% cov=85% --------LACVKSVHVAYHPGRPRSEVCRQLIHHMKSDSVRKRFPSLQASYQLLGYNAPSTIKIELINGKKHEFQAEHFSLREMQMRF-------- >UniRef50_B2A8Y5(4-85:98) Predicted CDS Pa_1_7820 n=9 Tax=Leotiomyceta RepID=B2A8Y5_PODAN E=2e-10 s/c=0.82 id=21% cov=80% --------------IQTAFNPFSPRAKSARLFLS-FLPPNARSSGMNITTQLLPRSSTAPSKLYVKFKDGKELNIDADNMGIKSIIEEVDRH----- >UniRef50_C4PZY2(32-120:127) Mitochondrial ribosomal protein L53, putative n=2 Tax=Schistosoma RepID=C4PZY2_SCHMA E=6e-17 s/c=0.99 id=28% cov=93% ---LKQLNFKPVIKMSFRFNPLLQKTESIRQFCSIISDPKWRTSNTNLIIKINVLSDNSPPEIEVSYDNGRILILKTENLSLRETIEIIITH----- >UniRef50_D0NYJ5(8-92:106) Putative uncharacterized protein n=2 Tax=Phytophthora infestans T30-4 RepID=D0NYJ5_PHYIN E=1e-13 s/c=0.91 id=19% cov=86% ------------KSAKVSFSSFDRRATGACEFYRQLTAEKTRKVNPKAEIAHQTSLAGILPTIKLDFISGSKHVMEVPDKNVREIFEEVDFHCS--- >UniRef50_UPI0001925848(1-97:98) PREDICTED: hypothetical protein n=1 Tax=Hydra magnipapillata RepID=UPI0001925848 E=2e-13 s/c=0.79 id=24% cov=98% --AAKQATLKLVREIRIAFDPFsnSENLTAVREFSRRISSRKLLKTNPKFKLETNVLCDASNPTIEVTFANKEKIKLDPELVDCKDLYASFIQECSKR- >UniRef50_Q54D99(8-88:129) Probable 39S ribosomal protein L53, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=RM53_DICDI E=1e-10 s/c=0.84 id=22% cov=82% --------LAKLKSVVYKFDPLNPNTRSIRSFIPLTTCKRSRQLAPECSISFDLGPQNTSPVIDIKFVNGTEKSIKTDTLELMSIVE---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 2792 0 0 A 2 3139 * * * * * * * 2777 1819 * * 4218 * * 1778 * 3159 * * 2 0 * * * * * * 2792 0 0 A 3 1040 * * * * 3437 3020 * 2620 * * * * * * 2884 * * * * 3 0 * * * * * * 3090 0 0 L 4 2621 * * * * * * 3684 2321 1081 * * * * * * 3527 * * * 4 0 * * * * * * 3544 0 0 A 5 2158 * 3961 * * * * * 1218 * * * * * 2289 3693 * * * * 5 0 * * * * * * 3631 0 0 R 6 3709 * * 4103 * 2500 * * 3287 3961 * * * 2489 4089 2745 2880 * * * 6 0 * * * * * * 3631 0 0 L 7 3577 * * * 3306 * * * * 1176 * * * * * * * 1424 * * 7 0 * * * * * * 3670 0 0 G 8 * * 4063 * * 4307 * * * 4315 * 1179 * * * 2741 3621 2584 * * 8 0 * * * * * * 3726 0 0 L 9 * * * * 4549 * * 4519 * 130 * * * * * * * * * * 9 0 * * * * * * 4820 0 0 R 10 2488 * * 5016 * * * * 866 * * * * 4638 2631 4621 * * * * 10 0 * * * * * * 4820 0 0 A 11 4108 4923 * * 3712 4583 3261 4833 3544 4673 4543 4831 2730 * * 5224 4165 * * 2215 11 0 * * * * * * 4820 0 0 V 12 5016 * * * * * * 2569 * 1745 * * * * * * * 993 * * 12 0 * * * * * * 4820 0 0 K 13 * * * 5854 * * * 4584 335 * * * * * 3673 3835 * * * * 13 0 * * * * * * 4934 0 0 Q 14 * * * 4766 * * * * 1512 * * * * 3698 2234 1824 4621 * * * 14 0 * * * * * * 4956 0 0 V 15 4554 * * * * * * 885 * 4987 3827 * * * * * * 1671 * * 15 0 * * * * * * 5292 0 0 R 16 4507 * 3503 * 4714 * 2329 3465 3120 4987 * * * 4144 3439 3155 4083 3763 * * 16 0 * * * * * * 5292 0 0 V 17 * * * * 3088 * * 1740 * 4929 * * * * * * 4772 1086 * 4552 17 0 * * * * * * 5292 0 0 Q 18 2920 * * 3923 * 5629 * * 2560 * * 5047 * 2155 2899 2402 * * * 4877 18 0 * * * * * * 5292 0 0 F 19 * * * * 540 * * * * 4767 * * * * * * * * * 1859 19 0 * * * * * * 5292 0 0 C 20 * 2265 1900 * * * 4010 * * * * 1579 * * * 3303 5266 * * * 20 0 * * * * * * 5292 0 0 P 21 5338 * * * * * * * * * * * 167 * * 4554 4569 * * * 21 0 * * * * * * 5292 0 0 F 22 * 3679 * * 1006 3208 * * * 2122 * * * 4877 * * 4268 * * * 22 49 4899 * 1000 1000 * * 5292 1000 0 E 23 3938 * 1913 3821 * 3078 3707 * * 4812 5047 4552 * * 2514 3399 * * * 5310 23 50 4877 * 0 * * * 5292 1000 0 K 24 4237 * 4428 3322 * 5310 4767 * 3548 4152 4984 4156 1739 3393 4554 5691 4857 5798 * * 24 0 * * * * * * 5292 0 0 N 25 * * 3873 4425 * * 4842 * 2767 * * 1591 * * 1769 * * * * 3679 25 82 5047 5310 1000 1000 * * 5292 1000 0 V 26 1547 * * * * * * * 5386 4180 * 2738 * * * 3804 2627 2356 * * 26 0 * * * * * 0 5275 0 1000 E 27 2807 * 3115 2568 * * * * 2447 3527 * * * * 2425 * 3375 5615 * * 27 0 * * * * * 0 5275 0 1000 S 28 3292 * * 4257 * 3752 5321 5164 * * * 3649 * * * 1236 3676 2879 * * 28 0 * * * * * 0 5275 0 1000 T 29 1051 2737 * * * * * 2728 * * 5189 * * * * * 3633 3207 * * 29 0 * * * * * 0 5275 0 1000 R 30 * 4538 * * * * * * 3395 * 5520 * * * 389 4968 * 4487 * * 30 0 * * * * * 0 5275 0 1000 T 31 * * 3797 1584 * * 5189 * 4434 2799 * 4132 * 3438 3439 3702 4085 * * * 31 0 * * * * 0 * 5275 0 1000 F 32 * * * * 598 * * * * 1713 * * * * * * * 4856 * * 32 0 * * * * * * 5294 0 0 L 33 * 4810 * * * * * 1929 * 1353 5332 * * * * 4895 * 3099 4011 3776 33 43 5089 * 0 * * * 5294 1000 0 Q 34 2836 6357 5042 5315 2694 * 2818 4875 * * 3599 * 4535 3815 3211 3790 5197 * * 4116 34 95 5197 4770 2000 415 * * 5294 1000 0 A 35 3341 * * * * * 2510 3871 4133 2905 5578 * * 2756 2601 3785 * * * 4044 35 46 * 4985 * * 0 * 5126 0 1000 V 36 5244 2642 * * 3921 * * 1119 * 3237 4371 * * * * * 4502 3498 * * 36 0 * * * * * 0 5247 0 1000 S 37 5327 * * 3762 * * * * 5134 3374 4746 2748 4736 5896 * 1857 2322 5315 4836 * 37 0 * * * * * 0 5206 0 1000 S 38 2093 4592 4806 * * 4617 * * * * * 4316 3601 * * 1576 2783 4866 * * 38 0 * * * * 0 * 5206 0 1000 E 39 4426 * 3687 2746 5338 * * * 2655 * * 4771 1694 3960 3375 * 4763 * * * 39 0 * * * * * * 5238 0 0 K 40 4027 * * 4186 * * * * 946 * * 4504 5055 2922 3750 4212 * * * 5045 40 55 * 4746 * * * * 5238 0 0 V 41 2013 * * * * * * 2992 3849 4065 * * * * * 4624 3218 1886 4665 4669 41 0 * * * * * 0 5055 0 1000 R 42 3867 * * * 5341 * * 3848 1855 4801 * * * 3954 1284 5651 * * 5065 * 42 0 * * * * * 0 5042 0 1000 C 43 3894 5431 3486 2409 * * * * 1787 4109 * * * 4607 3791 3412 3698 * * * 43 36 * 5341 * * 0 * 5042 0 1000 T 44 4826 * * * * * * * 2965 3795 * * * * 3275 1679 1737 4351 * * 44 0 * * * * * 0 5210 0 1000 N 45 4588 * * * 2402 4440 * * * * * 538 * * * * * * * 4864 45 0 * * * * * 0 5210 0 1000 L 46 5337 * * * * * * * * 3149 3211 * 540 * * 5036 4792 * * * 46 0 * * * * 0 * 5210 0 1000 N 47 3656 * 3388 3382 * 4741 5185 * 2084 5318 3950 1922 * * 5366 4303 * * * * 47 0 * * * * * * 5221 0 0 C 48 4363 1227 * * 3942 * * 4497 * 1932 * * 4351 * * * 3878 4802 * * 48 0 * * * * * * 5221 0 0 S 49 5430 * 3248 3234 * * * 3240 3869 5318 * * * 2514 4077 3107 2831 3735 * * 49 0 * * * * * * 5221 0 0 V 50 3488 * * * * * * 1588 * 4897 5029 * * * * * 4497 1314 * 3884 50 0 * * * * * * 5221 0 0 I 51 3783 * 5058 3383 5215 * * 3393 1742 4266 * * * 3630 4407 2886 3935 * * * 51 0 * * * * * * 5258 0 0 A 52 5406 5058 * * 3653 * 3722 3779 * 3147 * 5311 3477 * * 3667 2233 3723 3423 5061 52 0 * * * * * * 5258 0 0 D 53 * 5368 2480 1731 * * * * 4266 4517 5453 2156 * 2970 5329 * * * * * 53 0 * * * * * * 5258 0 0 V 54 * * * * * * * 1820 * 2275 5167 * 4517 * 4266 * 4355 1565 * * 54 52 4823 * 1585 585 * * 5258 1000 0 R 55 * * 4742 * * 4569 * 3235 3804 1917 * 4823 * * 1941 4355 * 2906 * * 55 0 * * * * * * 5258 0 0 H 56 2960 3088 3854 4742 * 5061 3072 * * 4355 * 3113 4569 * * 2277 3549 * * * 56 0 * * * * * * 5258 0 0 D 57 4355 * 740 * * * * * * * * * * 3653 * 4517 4757 * * 2378 57 54 4754 * 1000 1000 * * 5258 1000 0 G 58 4096 * 3158 4058 * 3187 * * 3422 5368 * 2783 4757 * 1833 4823 4517 * * * 58 0 * * * * * * 5258 0 0 S 59 2984 5215 3854 * 5270 4994 4757 4355 4823 4742 * 4878 * 3740 4060 1672 4569 4754 * * 59 0 * * * * * * 5258 0 0 E 60 3391 * * 1764 * * * * 4754 4355 * 4896 1282 * * 3653 * * * * 60 55 4742 * 1000 1000 * * 5258 1000 0 P 61 2897 * * * * * * * * * * * 447 4900 * 3339 * * * * 61 0 * * * * * * 5258 0 0 C 62 * 4400 * 4737 4201 * * * 4517 3235 4878 5734 * 3758 * 3789 1720 2827 * 3891 62 0 * * * * * * 5258 0 0 V 63 * * * * 3931 * * 751 * 3662 * * * * * * * 1937 * * 63 0 * * * * * * 5258 0 0 D 64 5329 5058 1839 2307 * * * 4823 2235 * * * * * * 5215 3189 4815 * 4517 64 0 * * * * * * 5258 0 0 V 65 3931 * * * 2918 * * 2326 * 3535 * * * * * * * 953 * * 65 0 * * * * * * 5258 0 0 L 66 3336 * 3261 1839 * * * * 3543 4400 4358 4205 * * * 3996 2195 * * * 66 0 * * * * * * 5258 0 0 F 67 * * * * 974 * * * * 1785 3854 * * * * * * * * 2928 67 0 * * * * * * 5258 0 0 G 68 3063 * 3775 4823 4878 5406 * 3102 3630 2964 * 4199 * 3854 * * 4900 2108 * * 68 0 * * * * * * 5258 0 0 D 69 * * 1105 * * * * * * * * 1193 * * * 3355 * * * * 69 0 * * * * * * 5256 0 0 G 70 * * * * * 387 * * 3827 * * 4747 * * * 2973 * * * * 70 29 5652 * 2807 222 * * 5256 1000 0 H 71 5098 * 3457 2212 5027 5245 5340 * 2055 * * * * 3247 3381 4191 3549 * * * 71 0 * * * * * * 5348 0 0 R 72 * * 4599 2721 * * * 4685 1356 * * * * * 2720 3053 4811 3846 * * 72 0 * * * * * * 5348 0 0 L 73 * * 4019 * 3187 * 3501 3023 3517 1611 4614 * * * 3624 * * 3635 * * 73 0 * * * * * * 5311 0 0 I 74 * * 4789 3682 * * 4604 3316 3116 2829 * 3507 * 3943 3163 4426 5177 2742 * * 74 0 * * * * * * 5385 0 0 M 75 * 5000 * * 1069 * * 3057 * 3300 2822 * * * * * * 3570 * 4480 75 0 * * * * * * 5385 0 0 R 76 * * 2519 4065 * * * 4374 1595 5137 * 2536 * 3626 4004 4557 * * * * 76 0 * * * * * * 5323 0 0 G 77 2610 2598 * * * 2831 * * * * * * 2629 * * 3893 2250 3455 * * 77 0 * * * * * * 5323 0 0 A 78 2500 * 2544 2065 * * 3879 * 4569 * * 5137 4065 5126 5083 2677 * * * * 78 0 * * * * * * 5323 0 0 H 79 * * 4065 3542 * 4815 2818 * 3997 4660 * 1014 * * 4990 * 4376 * * * 79 0 * * * * * * 5323 0 0 L 80 * * * * 2670 * * * 4065 1354 2024 * * * * * * 3904 * 3657 80 0 * * * * * * 5323 0 0 T 81 * * 2753 4376 * 4326 4815 * 4716 4569 * 2969 * * * 2481 1595 * * * 81 0 * * * * * * 5323 0 0 A 82 3166 4660 4374 * 4545 * 5083 3312 * 2286 * * * * * 3013 4847 1921 * * 82 0 * * * * * * 5323 0 0 Q 83 4576 * 3764 4516 * 4374 * * 2578 2456 2612 * * 3844 2767 3997 * * * * 83 0 * * * * * * 5323 0 0 E 84 * * 1950 711 * * * * * * * 4945 * * * 3350 * * * * 84 0 * * * * * * 5323 0 0 M 85 * * * * * * * 1015 * 2510 2018 * * * * * 4631 4557 * * 85 0 * * * * * * 5323 0 0 L 86 4165 * * * 3242 * * 2394 * 1402 4328 * * 3985 * * 4552 4026 * 4239 86 0 * * * * * * 4910 0 0 T 87 4239 * * 1867 * 6253 * * 4779 4950 2281 3505 * 3246 4411 3166 4904 * * * 87 0 * * * * * * 4910 0 0 A 88 2266 * * 2713 * * 4019 3980 * 2458 * 4146 * 3635 3679 3892 4320 * * * 88 0 * * * * * * 4556 0 0 F 89 * 4533 * * 908 * * 3104 * 3174 * * * * * * * 2713 * 4498 89 0 * * * * * * 4556 0 0 A 90 4489 * 2066 * * * * 2887 * * * 1179 * 2837 * * * * * * 90 0 * * * * * * 4416 0 0 S 91 * * * * 3440 * * * 2149 * * * * 3878 1921 2439 3000 4616 * * 91 0 * * * * * * 4416 0 0 H 92 * * * 3688 * * 421 * 4403 4300 * * * * 5542 * * * * 4158 92 0 * * * * * * 4186 0 0 I 93 * 1010 * * * * * 1215 * * * * * * * * * 3786 * * 93 0 * * * * * * 3443 0 0 Q 94 3914 * * * * * * * * * * * * 3781 * 1103 1339 * * * 94 0 * * * * * * 3443 0 0 A 95 1288 * * * * * * * 2658 * * * * * * 1211 * * * * 95 0 * * * * * * 2899 0 0 R 96 * * * * * * * * 580 * * * * * 1595 * * * * * 96 0 * * * * * * 2604 0 0 G 97 * * * * * 0 * * * * * * * * * * * * * * 97 0 * * 0 * * * 1000 0 0 //