HHsearch 1.5 NAME c4v1am_ FAM FILE c4v1am_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4v1am_.a3m DATE Sat Oct 11 08:31:04 2014 LENG 109 match states, 109 columns in multiple alignment FILT 18 out of 22 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4066 -0.3795 SEQ >ss_dssp CCCCCCCCCCBCCCTTHHHHHHHHHHHHHTSCCCSCSSSCBCCCHHHHHHHHHHHHHHTTCCCCTGGGGSCCBHHHHHHHHTSCBCCCCHHHHHHTSCCC TTCCCCCCC >sa_dssp EEEEEEDEEDBECCEDBDDCADDBAEDBBECEDDEDCDDCCBEEEECCECACCDACEDBECECDEEDDEDBDDAECBBDCADEEDDEDDECDDDEEDECD EEDEDEEEE >ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC CCCEEECCC >ss_conf 9589866788888467999999999987077755650124315379999999999998488788521110211999999851487885778888751188 663254049 >Consensus xxxpxxxxkxYxPPeDvxxrlxxxxxevxgxxxxxxxxxxxlxdxxxKfxlLxxlxxexxHxVpNSxLhxixtvxDvxxFYxTPVxxxtxxdeLxxxeLP xNLxIqxeY >c4v1am_ LVCPPIQSRTYIPPEDLQSRLESHVKEVFGSSVPSNWQDISLEDVHLKFSFLARLANDLRHAVPNSRLHQMCRVRDVLDFYNVPVQDRSKFDELIASNLP HNLKITWGY >UniRef50_UPI000186D42B(63-162:216) mitochondrial 50S ribosomal protein L50, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186D42B E=8e-29 s/c=1.27 id=31% cov=93% -----RSQKAYDPPNDVESKLSDICKRVLGLNY-NVEEEITIKN---KYLLLNACFEELGHCVPNSDLFKINNIAKIIEFYKTPVKTITPYEELKKQNLP PNLHVQQDY >UniRef50_Q22623(89-191:285) Protein T21B10.1, confirmed by transcript evidence n=2 Tax=Caenorhabditis RepID=Q22623_CAEEL E=3e-12 s/c=0.71 id=27% cov=88% ----------YVPGVDVKNQVLEAASSCLRSAgvKSENVDQYKFveGDNSVKFELLNRLGKSIEHWPTNGKLLHLETVADVVEFYQTPVKNVTKYTEMAR DEnKPKNVSI---- >UniRef50_C3YDI5(1-104:114) Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3YDI5_BRAFL E=2e-30 s/c=1.28 id=40% cov=96% ---PTRKSRAYQPPPDLQDRLEGMAAEVRGGPT-ENWRNVSVENIRTKFQVLSRCYKEFGHEVPSTELANMKTFQDVLEFYKTAVVDSDVYNQLIEKDLP PNVNIQWD- >UniRef50_Q9V3E3(49-146:189) Mitochondrial ribosomal protein L50 n=12 Tax=Drosophila RepID=Q9V3E3_DROME E=4e-29 s/c=1.31 id=34% cov=87% --------KPYSPPADAAERIRTVAASL-------QLKSDQLGNLSEKFEFLNACFQELQHGVPNSQVHELRTVSDVIAFYQTAVDTTVPFDALKRIELP ENLHIQYEY >UniRef50_A9V6K9(115-212:230) Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V6K9_MONBE E=8e-05 s/c=0.49 id=26% cov=85% -------------PEEVEPIVLALVAEYFPGQDSSDLTQLTFTDLQHKFEVLSELEQRVNIPIRDQELGFLNNMQAVNDYFSLphsilfPPDERELFPEL DMSTLPANLTV---- >UniRef50_UPI00003C0349(22-122:171) PREDICTED: similar to mitochondrial ribosomal protein L50 CG8612-PA n=2 Tax=Apis mellifera RepID=UPI00003C0349 E=2e-26 s/c=1.19 id=25% cov=93% -----RYQKEYNPPEDVCDRINKICK----TQQISTVDETKIEDPLQRFNLFLACEEEFQHPITNAVLCYIETIGDLKNYYKTPVGNVTPLDAMRSMDLP KNLHINYEY >UniRef50_C4PX51(33-139:190) Hypothetical conserved protein n=1 Tax=Schistosoma mansoni RepID=C4PX51_SCHMA E=2e-25 s/c=1.08 id=28% cov=92% ---------PYSPPEDVELRIEALSKELFNLSSSNNnqWKAYRFQNNDEKYKIFTACITEFKHHIANSYLHEINSIEDLINYFMTPVETPDFLYKLTSDa qnnicQLPSNLNIQLE- >UniRef50_C1C1Y0(91-197:250) Mitochondrial 39S ribosomal protein L50 n=2 Tax=Caligus clemensi RepID=C1C1Y0_9MAXI E=3e-24 s/c=1.05 id=35% cov=94% --------KPYEPPAQVDEIILSTLGEIYNLSSDVKADQIQLnDDLKKKTELLNILAQKTDHRVPNSFLHFMSNAEDLLDFYRTPIDCKNYYDRLISSEn sLPKNLHAIKDY >UniRef50_A8P498(91-194:286) RE06140p, putative n=1 Tax=Brugia malayi RepID=A8P498_BRUMA E=3e-22 s/c=1.02 id=44% cov=87% ----------YKPPSDLEDQVKEAVNAVF-ENVNSDIRSIDLtKNRHLKFQLLDLLGKRLCHVVPNSELHQMKTVGDLIDFYWRPVQNLTEYAQMARDNk qtLPKNLHI---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * * * 0 * * * * * * * * * * 1 0 * * * * * * 1637 0 0 V 2 * * * 2311 * * * 1212 * * * * * * * * * 1447 * * 2 0 * * * * * * 1637 0 0 C 3 * 367 * * * * 2154 * * * * * * * * * * * * * 3 0 * * * * * * 1637 0 0 P 4 * * * * * * * * * * * * 0 * * * * * * * 4 0 * * * * * * 1969 0 0 P 5 * * * * * * * * * 2555 * * 772 * * * 2033 * * * 5 0 * * * * * * 1969 0 0 I 6 * * * * * * * 3373 * 3461 * * 1636 * 1027 * * * * * 6 0 * * * * * * 2613 0 0 Q 7 * * * * * * * * 2655 * * * * 3373 1277 2701 * * * 2487 7 0 * * * * * * 2613 0 0 S 8 * 3147 * * * * * * * * * * * 1590 * 850 * * * * 8 0 * * * * * * 2613 0 0 R 9 * * * * * * * * 827 * * * * * 1460 * * * 3779 * 9 0 * * * * * * 3254 0 0 T 10 1770 * * 3585 * * * * 3099 * * * 1344 * * 4046 4254 * * * 10 0 * * * * * * 3451 0 0 Y 11 * * * * * * * * * * * * * * * * * * * 0 11 0 * * * * * * 3660 0 0 I 12 * * 3907 3610 * * * 2814 3976 * * 2978 * 3648 * 2876 2559 2909 * * 12 0 * * * * * * 3660 0 0 P 13 * * * * * * * * * * * * 0 * * * * * * * 13 0 * * * * * * 3660 0 0 P 14 4127 * * * * 3735 * * * * * * 205 * * * * * * * 14 0 * * * * * * 3868 0 0 E 15 2969 * * 860 * * * * 4127 * * 4053 3824 * * 4103 * 3735 * * 15 0 * * * * * * 3868 0 0 D 16 * * 449 3444 * * * * * * * 3301 * 3755 * * * * * * 16 0 * * * * * * 3868 0 0 L 17 2543 * * * * * * 4441 * 1745 * * * * * * * 1047 * * 17 82 * 4174 * * * * 3868 0 0 Q 18 4119 4013 3674 1779 * * * * 3632 * * 3952 * 1709 * 4071 * * * * 18 0 * * * * * 0 3808 0 1000 S 19 * * 2356 2318 * * * * * 3806 * 3632 3390 4071 * 1751 * * * * 19 0 * * * * * 0 3808 0 1000 R 20 * 4244 * * * * * 2162 3970 * * * * 2822 948 * * * * * 20 0 * * * * * 0 3808 0 1000 L 21 * * * * * * * 1892 * 1018 * * * * * * * 2078 * * 21 0 * * * * * 0 3808 0 1000 E 22 * * 3010 1406 * * * * 4041 1975 * 4013 * * 4119 3970 * * * * 22 0 * * * * * 0 3808 0 1000 S 23 2207 4244 3970 2822 * 3783 3952 * 4013 * * * * * * 1896 4119 * * * 23 0 * * * * * 0 3808 0 1000 H 24 2822 * * * * * 2806 2393 * 2583 3783 * * * 4329 * 3674 3095 * 4623 24 0 * * * * 0 * 3808 0 1000 V 25 1973 2502 * * 4041 * * * * 3755 * * * * * 3874 * 1451 * * 25 0 * * * * * * 3868 0 0 K 26 2210 * * * * 3755 * * 1449 * * 4103 * 4127 2708 3735 * * * * 26 88 * 4081 * * * * 3868 0 0 E 27 4026 * * 708 * * * * * * * * * 4106 3966 2290 * * * * 27 0 * * * * * 0 3808 0 1000 V 28 * 3604 * * * * * 3012 * 2948 * * * * * * * 818 * 3366 28 188 * 3032 * * * 0 3808 0 1000 F 29 * 4251 * * 1128 * * * * 2066 3650 * * * 3574 * * * * 3515 29 103 * 3859 * * * 0 3684 0 1822 G 30 * * * * * 918 * * 3829 * * 2446 3188 * 3224 * * * * * 30 0 * * * * 925 1079 3611 0 2201 S 31 3808 * * 3963 * 2504 * * * 1772 * * 3279 * * 2537 3059 * * * 31 0 * * * * 955 1046 3769 0 1482 S 32 2853 * * * * 4016 * * * * * 2995 3742 2668 * 1403 3962 * * * 32 119 3661 * 1000 1000 * 0 3832 1000 1000 V 33 * * 2652 * * * * * 2853 2905 * * * 4003 * 2713 3742 2217 * 3962 33 216 * 2848 * * * 0 3832 0 1000 P 34 4166 * 3520 3875 * 3761 * 3751 * * * 2976 2718 * * 1467 * * * * 34 0 * * * * 549 1660 3630 0 1958 S 35 * * * 2291 * 3156 * * * * * 2039 * * * 1468 * 3666 * * 35 96 * 3962 * * 0 * 3832 0 1000 N 36 * * 1965 * * 4068 * * 3697 * * 1252 * 4112 * * 3924 3973 * * 36 212 3781 3973 1000 1000 * 0 3811 1000 1000 W 37 3625 * * 3852 * * * 3974 * 2134 * * * * * * * 2625 1336 * 37 0 * * * * 1000 1000 3744 0 1424 Q 38 * * 1813 3973 * * * * 2937 4331 * * * 2479 2890 * 2670 * * * 38 0 * * * * * 0 3811 0 1000 D 39 3781 * 2826 2058 * * * * * * * 3750 * 1500 * 3078 * * * * 39 0 * * * * 0 * 3811 0 1000 I 40 3269 * 4222 * * * * 1890 * 3444 * * * * * * 1905 3824 * 2803 40 0 * * * * * * 3868 0 0 S 41 * * 4103 * * * * * 2898 * * * 4371 2969 2050 2072 2716 * * * 41 82 4174 * 1000 1000 * * 3868 1000 0 L 42 * * * * 1783 * * 2075 * 1317 * * * * * * * 3824 * * 42 335 2269 * 443 1921 * * 3868 2018 0 E 43 * * 2929 1995 * 2030 * * 2604 * * * * 3101 * * 3444 * * * 43 0 * * * * * * 3868 0 0 D 44 * * 1057 4371 * 4174 * * 4508 * * 1686 * * * 4041 * * * * 44 90 * 4053 * * * * 3868 0 0 V 45 * * * * * * * 3753 * 1476 4072 1988 3977 * 3982 3533 * 4590 * * 45 0 * * * * * 0 3794 0 1000 H 46 3966 * 3799 4072 * * 3254 * 3686 2993 * * * 2795 2217 2864 * * * * 46 0 * * * * * 0 3794 0 1000 L 47 * * * 2944 * * 3356 * 2866 1775 * * * 2971 * * 3753 2823 * * 47 0 * * * * 0 * 3794 0 1000 K 48 * * * * * * * * 178 * * * * * 3104 * * * * * 48 0 * * * * * * 3868 0 0 F 49 * * * * 508 * * * * * * * * * * * 3755 * * 2166 49 0 * * * * * * 3868 0 0 S 50 4174 * 4041 1763 4508 * * * 2995 4053 * 3367 * 2516 4371 4663 * * * * 50 0 * * * * * * 3868 0 0 F 51 * * * * 2793 * * 4197 * 726 4797 * * * * * * 2638 * * 51 0 * * * * * * 3988 0 0 L 52 * 4074 * * 2301 * * * * 439 * * * * * * * * * * 52 0 * * * * * * 3988 0 0 A 53 1631 * 4145 * * * * * * 4136 * 1952 * * * 2219 3466 * * * 53 0 * * * * * * 3988 0 0 R 54 1430 * * 3441 * * 4778 3771 4169 4145 * * * 3521 2134 * * * * * 54 0 * * * * * * 3988 0 0 L 55 * 1013 * * * * * * * 987 * * * * * * * * * * 55 0 * * * * * * 3988 0 0 A 56 1555 * * 2747 3180 2429 * 3466 * * * * * * * * * 4169 * 3866 56 0 * * * * * * 3988 0 0 N 57 3458 * 4778 2231 * * * * 1673 * * 4718 * 2202 * 4797 4197 * * * 57 0 * * * * * * 3988 0 0 D 58 4205 * 3747 800 * * * * 3771 * * * * * 2750 3738 * * * * 58 0 * * * * * * 3988 0 0 L 59 * * * * 1422 * * 3738 * 1371 * * * * * * 3771 3441 * * 59 0 * * * * * * 3988 0 0 R 60 * 4145 3771 2938 * 1511 * * 3466 * * 2723 * 3199 4718 * * * * * 60 0 * * * * * * 3988 0 0 H 61 * * * * * * 237 3441 * * * * * * 4074 * * * * * 61 0 * * * * * * 3988 0 0 A 62 2408 4102 * 3866 * 4264 3466 * * * * * 2747 * 3771 4169 * 2886 2953 * 62 0 * * * * * * 3988 0 0 V 63 * * * * * * * 1497 * * * * 3738 * * * * 809 * * 63 0 * * * * * * 3988 0 0 P 64 3466 * * * * * * * * * * * 545 * 3441 * 2923 * * * 64 0 * * * * * * 3988 0 0 N 65 * * 3441 * * * * * * * * 253 * * * 3866 * * * * 65 0 * * * * * * 3988 0 0 S 66 4136 * * * * 3738 * * * * * * * 3441 * 499 3866 * * * 66 0 * * * * * * 3988 0 0 R 67 * * 4102 2203 3771 * * * 2938 * 4205 * * 2805 3098 * * 3105 * 3466 67 0 * * * * * * 3988 0 0 L 68 * * * * * * * * * 77 * * * * * * * 4264 * * 68 0 * * * * * * 3988 0 0 H 69 3866 4136 * * 4102 3441 752 4169 * 3738 * * * * * * * * * * 69 0 * * * * * * 3988 0 0 Q 70 * * * 2345 2597 * 3738 * 4102 4481 * 3866 * 2529 4435 4074 4169 * * 4136 70 0 * * * * * * 3988 0 0 M 71 * * * * * * * 1641 * 2190 1474 * * * * * * 3315 * * 71 0 * * * * * * 3988 0 0 C 72 * 3068 * 2923 * * * * 2999 * * 2054 * 2563 2830 3771 * * * * 72 0 * * * * * * 3988 0 0 R 73 * 3604 * * * * * * * * * 2161 * * 3747 2820 1065 * * * 73 0 * * * * * * 3988 0 0 V 74 2606 * * * 3866 * * 1937 * 4074 3441 * * * * * * 1496 * * 74 0 * * * * * * 3988 0 0 R 75 2908 * 4797 2458 * 2216 * * 4563 * * 4074 * 2283 3747 4264 * * * * 75 0 * * * * * * 3988 0 0 D 76 3441 * 235 * * * * * 4102 * * * * * * * * * * * 76 0 * * * * * * 3988 0 0 V 77 4205 * * * * * * 4102 * 1588 4435 * * * * * * 975 * * 77 0 * * * * * * 3988 0 0 L 78 4563 * * * * * * 1958 4136 1702 * 3441 * * 3121 * 4205 3738 * * 78 0 * * * * * * 3988 0 0 D 79 4264 * 1755 1958 * 4435 4563 4205 4797 * * 2550 * * * * 4481 * * * 79 0 * * * * * * 3988 0 0 F 80 * * * * 395 * * * * * * * * * * * * * * 2062 80 0 * * * * * * 3988 0 0 Y 81 * * * * 2453 * * * * * * * * * * * * * * 291 81 0 * * * * * * 3988 0 0 N 82 * * * * * * * * 2445 4797 4197 3747 * 2055 2514 2481 * * 4145 * 82 0 * * * * * * 3988 0 0 V 83 * * * * * * * 4563 * 3441 * * * * 4145 * 445 3747 * * 83 139 3441 * 2585 263 * * 3988 1000 0 P 84 3052 * * * * * * * * * * * 286 * * * 4074 * * * 84 0 * * * * * * 3988 0 0 V 85 * * * * * * * 2609 * * * * 3441 * * * * 427 * * 85 0 * * * * * * 3988 0 0 Q 86 * * 1595 3466 * 4136 * 4169 2157 * * * * 2529 * * * 3866 * * 86 0 * * * * * * 3988 0 0 D 87 * 3771 1575 3441 * * * * * * * 2409 * * * * 1687 * * * 87 0 * * * * * * 3988 0 0 R 88 * * * * * 4563 * 4102 3771 4145 4481 * 3466 * 2179 3123 3216 2387 * * 88 0 * * * * * * 3988 0 0 S 89 * * 2652 3441 * * * * * 3337 * 3771 * * * 3747 1152 4264 * * 89 0 * * * * * * 3988 0 0 K 90 * * * 3283 3466 * * * 2080 3441 * * 1572 * * * * 3866 * 3771 90 0 * * * * * * 3988 0 0 F 91 * * * * 1710 * * 4435 * 1938 * * * * * * * * * 1369 91 0 * * * * * * 3988 0 0 D 92 4145 * 990 3135 * * * * * * * 3866 3441 * * * 3738 * * 3466 92 0 * * * * * * 3988 0 0 E 93 2193 * * 1207 * * * * 2738 * * * * 2999 3771 * * * * * 93 0 * * * * * * 3988 0 0 L 94 * * * * * * * 3373 * 609 2013 * * * * * * * * * 94 0 * * * * * * 3988 0 0 I 95 2492 4481 3441 * * * * 2475 3180 * * * * 4169 2553 3666 3466 * * * 95 0 * * * * * * 3988 0 0 A 96 2267 * * 3866 * * * * 4102 * 3441 3121 * * 2446 2066 4797 * * * 96 0 * * * * * * 3988 0 0 S 97 3458 * 2172 * * * * 3216 3866 * 3105 * * 4102 4563 2060 * 4205 * * 97 81 4197 * 2585 263 * * 3988 1000 0 N 98 * * 2995 1119 * * * * * * * 2402 * 3368 * 4797 3441 * * * 98 397 2055 * 1503 628 * * 3988 2347 0 L 99 * * * * * * * * 3738 112 * * * * * * * * * * 99 0 * * * * * * 3988 0 0 P 100 * * * * * * * * * * * * 0 * * * * * * * 100 0 * * * * * * 3988 0 0 H 101 3441 * * 2594 * * 4718 * 1935 * * * 1690 * * 2912 * * * * 101 0 * * * * * * 3988 0 0 N 102 * * * * * * * * * * * 0 * * * * * * * * 102 0 * * * * * * 3988 0 0 L 103 * * * * * * * * * 223 * * * * * * * 2801 * * 103 0 * * * * * * 3988 0 0 K 104 * * * * * * 1284 * 2267 * * 2652 * * * 3738 3441 * * 4169 104 0 * * * * * * 3988 0 0 I 105 3771 * * * * * * 480 * * * * * * * * * 2254 * * 105 0 * * * * * * 3988 0 0 T 106 3931 * * * * * * 3362 * * * 3603 * 782 * 4027 3159 * * * 106 0 * * * * * * 3461 0 0 W 107 * * * * * * * * 3266 2993 * * * 2606 * * * * 1497 1988 107 0 * * * * * * 3399 0 0 G 108 * * 1204 1163 * 4013 * * * * * * * * * 4125 * * * * 108 0 * * * * * * 3399 0 0 Y 109 * * * * * * * * * * * * * * * * * * * 0 109 0 * * 0 * * * 2942 0 0 //