HHsearch 1.5 NAME c4v198_ FAM FILE c4v198_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4v198_.a3m DATE Sat Oct 11 08:30:39 2014 LENG 95 match states, 95 columns in multiple alignment FILT 17 out of 21 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.7 EVD 0.4264 0.3178 SEQ >ss_dssp CCSSCSSSCSCCCCHHHHHHEEECTTSCEEECCTTSSSCTTTSCHHHHHHHHSCEECCHHHHHHHHHTSCGGGTSCCCCTTCGGGGGSSCCSCCC >sa_dssp DDEECEEEDEDECCDDBCEECDCBDDCCABCDDEDDEEEDEECEEDDDEEBDEDDEBEEEDBEDBCECBDEEDDEDCEEEECEDDEEBEDEEEEE >ss_pred CEEECCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCEEC >ss_conf 95731245867658999999876057802112687033543039888974466552037799999985225523876587889854334320109 >Consensus xxxxsxxxGkrkxvkxVixRFxRLxxGxWIrxxxGrxKklwkKsxaxxxrlrxhvxcnxxQsxLLDKmxtxxWkrxkxYxnDPYxxYhxRxxxxx >c4v198_ VTYFSSRKGKRKTVKAVIYRFLRLHSGLWLRRKAGYKKKLWKKTAARKRRLREFVFCNKTQSKLLDKMTTSFWKRRNWYADDPYQKYQDRTNLKV >UniRef50_UPI0001758837(60-151:172) PREDICTED: similar to AGAP011635-PA n=1 Tax=Tribolium castaneum RepID=UPI0001758837 E=8e-32 s/c=1.49 id=49% cov=98% LIKLGLNRGRCKSVKAVRRRFYRLHWGAWIRTMCGRHKRLWKKSGANKRRLRQHVMCNASQSYLLDKMAGPFWTKRRYYVDDPYEPYHTREE--- >UniRef50_Q21454(35-126:158) Probable 39S ribosomal protein L35, mitochondrial n=3 Tax=Chromadorea RepID=RM35_CAEEL E=6e-24 s/c=1.21 id=30% cov=98% -IRFDQKVGRKRPAQDVLDRFKRLNNGMWIHAHPGRHKLRYMKDETWQKTSLYYETCTKEQCEILDKLMTPYWLRPKHYPNDPYSAYNVRHNV-- >UniRef50_B0XIL4(87-180:189) 39S ribosomal protein L35, mitochondrial n=5 Tax=Neoptera RepID=B0XIL4_CULQU E=7e-31 s/c=1.43 id=54% cov=100% VIKFSMVKGKRKSVKPVIKRFKRLDWGGWIRTMSGRHKHMWKKSAARKRRLRQHVMVNLQQAHLLDKMVTKYWKRPKHYINDPYEPYHTREELR- >UniRef50_C4WT41(30-179:188) ACYPI008864 protein n=3 Tax=Acyrthosiphon pisum RepID=C4WT41_ACYPI E=1e-41 s/c=1.09 id=63% cov=98% LTKFSLQKGKRKTVKTVVDRFYRLGWGIWIRTKCGRQKKLWKKPAARKRRLRQHVFCNAKQSTLLDKMTTKYWKKRRFYPDDPYEPYHDREE--- >UniRef50_UPI0000E48CA9(206-327:332) PREDICTED: similar to mitochondrial ribosomal protein L35 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48CA9 E=8e-43 s/c=1.18 id=57% cov=100% VVRYSISKGKKKTVHAVIDRFYRLDCGLWVRPQSGRAKKLWKKTPRRRYRLKQHVFCNKTQSKMLDRMTSGFWKKRRHYLDDPFEQYHERH-FDV >UniRef50_UPI000180C2D4(9-163:219) PREDICTED: similar to mitochondrial ribosomal protein L35 n=1 Tax=Ciona intestinalis RepID=UPI000180C2D4 E=1e-32 s/c=0.92 id=49% cov=101% ITRVSQRGGKTKSSKMVLQRFRRLGNGLWIHRQLGYKKKIWKkllktRSSAIIWRLRRHVICNQEQSELLDKLVTPFWKKQKWYVDDPYKGYTEESLFYY >UniRef50_C4Q6I8(7-154:169) 39S ribosomal protein L35, mitochondrial, putative (Fragment) n=1 Tax=Schistosoma mansoni RepID=C4Q6I8_SCHMA E=9e-17 s/c=0.46 id=24% cov=97% KKYYSETGDYNPPNQDAIGRFKRLRWGAYIHARSGRAKHLYRRSESELNRRSEHILTNRATTFLINNLLNKQWRTPKYYPNDIYEPYHQRT---- >UniRef50_UPI0000DB786C(65-175:185) PREDICTED: similar to mitochondrial ribosomal protein L35 CG13410-PA n=1 Tax=Apis mellifera RepID=UPI0000DB786C E=1e-38 s/c=1.40 id=52% cov=99% LIKYSRKKGKRKTVKAVLKRFYRLNWGIWIRTFAGRHKKLWKKSAKRRYKLKQHVFCNAKQSTLLDKMVNYYWRRPHYYVDDPYTPYHSREEF-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * 3329 2408 1426 * * * * * * * 1556 * * 1 0 * * * * * * 2459 0 0 T 2 * * * * * * * 1334 2640 * * * * * * * 1411 3902 * * 2 0 * * * * * * 2673 0 0 Y 3 * * * * * * * * 1672 * * * * * 1858 * * * * 1285 3 0 * * * * * * 2673 0 0 F 4 * * * * 1002 * * * * 3884 * * * * * * * 3010 * 1695 4 0 * * * * * * 2710 0 0 S 5 * * 2565 * * 2767 * * * * * * * * * 548 * * * * 5 0 * * * * * * 2710 0 0 S 6 4878 * * 2709 * * * 3948 * 1660 4321 * * 2027 4291 4729 4389 * * * 6 0 * * * * * * 2710 0 0 R 7 * * * * * * * * 2184 * * 3884 * 3469 1692 3948 2709 3401 * * 7 0 * * * * * * 2710 0 0 K 8 * * * * * 2125 * * 1015 * * * * * 3884 4679 * 2565 * * 8 0 * * * * * * 2710 0 0 G 9 * * 2709 * * 239 * * * * * * * * * * * * * * 9 0 * * * * * * 2710 0 0 K 10 * * * * * * * * 712 * * * * * 2079 * * * * 2709 10 0 * * * * * * 2710 0 0 R 11 * 3884 * * * * * * 2097 * * 2709 * * 1092 * 3710 * * * 11 0 * * * * * * 2710 0 0 K 12 * * * * * * * * 560 * * * 2709 * 2565 * * * * * 12 0 * * * * * * 2710 0 0 T 13 * * * * * * * * * * * * 1635 * * 1871 1305 * * * 13 0 * * * * * * 2710 0 0 V 14 2565 * * * * * * * * * * 2709 * * * 3710 * 733 * * 14 0 * * * * * * 2710 0 0 K 15 * * * * * * 3948 * 705 * * * * 1635 * * * * * * 15 0 * * * * * * 2710 0 0 A 16 1214 * 1635 * * * * * * * 3710 * 4321 * * 3678 4554 * * * 16 0 * * * * * * 2710 0 0 V 17 2709 * * * * * * * * * * * * * * * * 239 * * 17 0 * * * * * * 2710 0 0 I 18 * * * * * * * 1216 * 1552 * * * * 3884 * 3678 3596 * * 18 0 * * * * * * 2710 0 0 Y 19 * * 1517 4676 * 2709 * * 2126 * * * * 3710 3884 * * * * 3549 19 0 * * * * * * 2710 0 0 R 20 * * * * * * * * * * * * * * 0 * * * * * 20 0 * * * * * * 2710 0 0 F 21 * * * * 0 * * * * * * * * * * * * * * * 21 0 * * * * * * 2710 0 0 L 22 * * * * 3526 * * * 1121 2728 * * * * 3710 * * * * 2145 22 0 * * * * * * 2710 0 0 R 23 * * * * * * * * * * * * * * 0 * * * * * 23 0 * * * * * * 2710 0 0 L 24 * * * * * * * * * 0 * * * * * * * * * * 24 0 * * * * * * 2710 0 0 H 25 * * 2303 * * 3071 1711 * * * * 2184 * * 2709 * * * * * 25 0 * * * * * * 2710 0 0 S 26 * 2859 * * * * * * * * * 1808 * * * 3006 * * 1145 * 26 0 * * * * * * 2710 0 0 G 27 * * * * * 0 * * * * * * * * * * * * * * 27 0 * * * * * * 2710 0 0 L 28 1915 * * * * 3423 * 3417 * 1557 2565 * * 4676 * * * * * * 28 0 * * * * * * 2710 0 0 W 29 * * * * * * * * * * * * * * * * * * 239 2709 29 0 * * * * * * 2710 0 0 L 30 * * * * * * * 441 * 4729 * * * * * * * 2148 * * 30 0 * * * * * * 2710 0 0 R 31 * * * * * * 1328 * * * * * * * 733 * * * * * 31 0 * * * * * * 2710 0 0 R 32 1635 * * * * * * * * * * * 3948 * 1671 * 1741 * * * 32 0 * * * * * * 2710 0 0 K 33 * * * * 4291 * 2227 * 1835 4532 3086 * * 2824 2709 * * * * * 33 0 * * * * * * 2710 0 0 A 34 2008 3181 * * * * * * * 3710 * * 2565 * * 1338 * * * * 34 0 * * * * * * 2710 0 0 G 35 * * * * * 0 * * * * * * * * * * * * * * 35 117 3685 * 2585 263 * * 2710 1000 0 Y 36 * * * * * * * * * * 3685 * * * 717 * * * * 1671 36 0 * * * * * * 2710 0 0 K 37 2200 * * * * * 1721 * 1352 * * * * 3520 * * * * * * 37 0 * * * * * * 2710 0 0 K 38 * * 3685 * * * * * 117 * * * * * * * * * * * 38 0 * * * * * * 2710 0 0 K 39 * * * 3685 * * 2301 * 836 3454 * * * * 3884 * * * * * 39 0 * * * * * * 2710 0 0 L 40 * * * * 4389 * * 3710 * 704 3423 * * * 3454 * 3685 * * * 40 0 * * * * * * 2710 0 0 W 41 * * * * 4486 * * * * * * * * * * * * * 492 2034 41 0 * * * * * * 2710 0 0 K 42 * * * * * * * * 655 * 3454 * * 3685 2350 * * * * * 42 115 3710 * 2322 322 * * 2710 1000 0 K 43 * * * * * * * * 376 * * * * * 2125 * * * * * 43 0 * * * * * * 2710 0 0 T 44 * * 3454 * * * * * 4532 * * * 4554 * * 834 1933 * * * 44 0 * * * * * * 2710 0 0 A 45 1526 * * 2034 * 3884 * * * * * * 2771 * * 2698 4639 * * * 45 0 * * * * * * 2710 0 0 A 46 946 * * * * * * * 4291 3685 * 4532 * * 3948 2709 3454 * * * 46 0 * * * * * * 2710 0 0 R 47 * * * 2709 * * * 3710 * 4486 * 3884 * 4639 1154 * * * 3454 3685 47 117 * 3685 * * * * 2710 0 0 K 48 * * * * * * * 3563 1246 2640 * * * 3007 2258 * * * * * 48 0 * * * * * 0 2673 0 1000 R 49 * * * * * * * * 1579 * * 2640 * * 1738 * * * 3563 3051 49 0 * * * * * 0 2673 0 1000 R 50 * * * * * * * * 4217 * * * * 4327 373 * 3007 * * * 50 0 * * * * * 0 2673 0 1000 L 51 * * * * * * * * * 484 * * * * 2640 3007 * * * * 51 0 * * * * * 0 2673 0 1000 R 52 * * * * * * * * 2575 3007 * * * * 869 2640 * * * * 52 0 * * * * * 0 2673 0 1000 E 53 * * * 1285 * * * * * * * * * 1393 3563 * * * * 3007 53 0 * * * * 0 * 2673 0 1000 F 54 * * * * 2648 * 575 * * * * * * * * * * * * 2565 54 0 * * * * * * 2710 0 0 V 55 * * * 2565 * * * 2709 * * * * * * * * * 560 * * 55 0 * * * * * * 2710 0 0 F 56 * * * * 1320 * * 3710 * 2081 3086 * * * * * 2565 * * * 56 0 * * * * * * 2710 0 0 C 57 * 496 * * * * * * * * * * * * * * 2340 3423 * * 57 0 * * * * * * 2710 0 0 N 58 * * 4389 * * * * * * * * 352 * * * * 2565 * * * 58 0 * * * * * * 2710 0 0 K 59 2005 * * * * * * * 1213 4321 * * * 3710 2373 * * * * * 59 0 * * * * * * 2710 0 0 T 60 2709 * * 2027 * * * * 3417 * * * * 4321 * 3884 1357 * * * 60 0 * * * * * * 2710 0 0 Q 61 * * * * * * * * * * * * * 239 * * 2709 * * * 61 0 * * * * * * 2710 0 0 S 62 4321 2010 * * * * * * * * * 4679 * * * 972 2709 * * * 62 0 * * * * * * 2710 0 0 K 63 * * * 2027 2709 * 4321 * 1725 * * * * * * * 2869 * 4486 3884 63 0 * * * * * * 2710 0 0 L 64 * * * * * * * 2565 * 384 3948 * * * * * * * * * 64 0 * * * * * * 2710 0 0 L 65 * * * * * * * 2709 * 239 * * * * * * * * * * 65 0 * * * * * * 2710 0 0 D 66 * * 239 * * * * * * * * 2709 * * * * * * * * 66 0 * * * * * * 2710 0 0 K 67 * * * * * * * * 354 * * 2709 * * 3948 * * * * * 67 0 * * * * * * 2710 0 0 M 68 * * * * * * * * * 1328 733 * * * * * * * * * 68 0 * * * * * * 2710 0 0 T 69 3884 * * * * * * * * 2709 2565 * * * * * 1535 1914 * * 69 0 * * * * * * 2710 0 0 T 70 * * * * * 3884 * * * * * 2293 * * * 3267 794 4389 * * 70 0 * * * * * * 2710 0 0 S 71 * * * * * 3948 * * 1792 * * * 1506 * * 2040 * * * 4291 71 0 * * * * * * 2710 0 0 F 72 * * * * 1295 * * * * * * * * 2709 * * * * * 1186 72 0 * * * * * * 2710 0 0 W 73 * * * * * * * * * * * * * * * * * * 0 * 73 0 * * * * * * 2710 0 0 K 74 * * * * * * * * 958 2565 * * * * 2008 * 3884 * * * 74 0 * * * * * * 2710 0 0 R 75 * * * * * * * * 1992 * * * * * 748 * 2709 * * * 75 0 * * * * * * 2710 0 0 R 76 * * * * * * * * * * * * 965 3622 1299 * * * * * 76 0 * * * * * * 2633 0 0 N 77 * * * * * * 4227 * 1015 * * 2155 * * 2138 * * * * * 77 0 * * * * * * 2633 0 0 W 78 * * * * 4344 * 1529 * * * * * * * * * * * 1787 1669 78 0 * * * * * * 2642 0 0 Y 79 * * * * 4199 * * * * * * * * * * * * * * 81 79 0 * * * * * * 2642 0 0 A 80 4305 * * * * * * 2208 * 3077 * * 1461 * * * * 1993 * * 80 0 * * * * * * 2642 0 0 D 81 * * 1092 * * * * * * * * 914 * * * * * * * * 81 0 * * * * * * 2642 0 0 D 82 * * 0 * * * * * * * * * * * * * * * * * 82 0 * * * * * * 2642 0 0 P 83 * * * * * * * 2788 * * * * 226 * * * * * * * 83 0 * * * * * * 2642 0 0 Y 84 * * * * 3813 * * * * * * * * * * * 3986 * * 208 84 0 * * * * * * 2642 0 0 Q 85 * * * 1378 * * * * 2301 * * * * 2824 * 2563 3297 * * * 85 0 * * * * * * 2642 0 0 K 86 2563 * * * * 3550 * * 2824 * * * 1090 3813 * 3986 * * * * 86 0 * * * * * * 2642 0 0 Y 87 * * * * * * * * * * * * * * * * 3986 * * 94 87 0 * * * * * * 2642 0 0 Q 88 * * * * * * 663 * * * * 2563 * 4305 * * 2752 * * * 88 0 * * * * * * 2642 0 0 D 89 * * 2392 2676 * * * * * * * * * 2788 * 3195 2121 2563 * * 89 0 * * * * * * 2642 0 0 R 90 * * * 2752 * * * * * * * * * * 232 * * * * * 90 0 * * * * * * 2642 0 0 T 91 * * * 1885 * * 2057 * * * * 4199 3986 * * 3550 1806 * * * 91 125 * 3587 * * * * 2642 0 0 N 92 * * * 1252 * * * 3691 * 3219 * 1339 * * * * * * * * 92 0 * * * * 0 * 2311 0 1000 L 93 * * * * 1357 * * * * 1788 * * * * * 3508 * 2108 * * 93 0 * * * * * * 2313 0 0 K 94 * * 2561 2932 * * * * 1593 * * * * * 2512 * * * * 2375 94 0 * * * * * * 1905 0 0 V 95 * 2661 * * * * * * * 2784 * * * * * * * 1100 * 2119 95 0 * * 0 * * * 1761 0 0 //