HHsearch 1.5 NAME c4v193_ FAM FILE c4v193_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4v193_.a3m DATE Sat Oct 11 08:37:56 2014 LENG 118 match states, 118 columns in multiple alignment FILT 107 out of 126 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.9 EVD 0.4332 0.6898 SEQ >ss_dssp CCCCCCCCGGGGCCCHHHHHHHTCCSSSCCSEEEEEECSCSTTSCHHHHHHHHHHTCCSTTCEEEEECSHHHHHHHHHHTTSEEEEECBCTTCSCCGGGG GGCEEETTTEEESSCSCC >sa_dssp EEEEEEDEEEEDEEDEECCEEEEDEEEEEDEDBBACBDEDCEEDCECBDDBBEEBDBEEDEDDDDCECDEECCDDBDDADDBBDDDDCEDEDDECEEECE EDDCDDEEBCCBBEDEEE >ss_pred CCCHHHCCHHHCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEEEECCCCCCCCCCC CCEEECCCCCEEEEECCC >ss_conf 9721017600036578222015897579983899997114458898899999970752038659974998998799862221366552267888851111 100886698299960579 >Consensus xxxxxxxpxxxxxxxxxxhexxxxxpxePxkLxxVTlvKSxiGxPxxqKxtlkxLGLxKxxxxVixkntPsixGmLxkVKHLVxVepvxxpxgxPtxxdx xxtxLxxnGexxvxxxlx >c4v193_ KFTRSRIPDKVFQPSPEDHEKYGGDPQYPHKLHIVTRIKSTKRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKPLKLPQGLPTEEDM ANTCLKSNGELVVRWLLN >UniRef50_A5FZU7(9-64:64) 50S ribosomal protein L30 n=9 Tax=Bacteria RepID=RL30_ACICJ E=4e-05 s/c=0.88 id=25% cov=47% ----------------------------------VTQVGSPIGRKPGQKETLIGLGLHRMNASRELAATPETLGRIRKVKHLLKVEEL------------ ------------------ >UniRef50_A8Q7C9(24-141:191) CG7038-PA, putative n=1 Tax=Brugia malayi RepID=A8Q7C9_BRUMA E=7e-18 s/c=0.78 id=33% cov=83% -----------------EHfpEKREG---EPPKLWLVWIYKNYSTNsPYIKKKIENLFGKDvEPGKMYIFKNTASQNTELWPLKHIIEVRGLSFPNGEPT IDDVNALEVFPDGRCVVDKHL- >UniRef50_Q1ISA4(22-71:74) 50S ribosomal protein L30 n=2 Tax=Acidobacteria RepID=RL30_ACIBL E=2e-07 s/c=1.14 id=31% cov=42% -------------------------------------IRSAIQAPVKHKLVIKGLGFTRLNQVIVREDSPSIRGMVAKVPHLVEI--------------- ------------------ >UniRef50_C0S547(4-62:234) Predicted protein n=14 Tax=Leotiomyceta RepID=C0S547_PARBP E=4e-11 s/c=1.17 id=22% cov=49% ----------------------------------ITLVRSAIGLPRRITGVLMALGLKKRMQTVFYPVTPDVAGQIMKVKELVSVREVEKP--------- ------------------ >UniRef50_UPI0001C30EC9(7-59:61) ribosomal protein L30 n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30EC9 E=3e-10 s/c=1.25 id=21% cov=45% ----------------------------------ITQTKSRNGANQRQLDTLRSIGLRKIGHTVEQQDSPQMRGMVHAVRHLVKVE-------------- ------------------ >UniRef50_C1BUP3(90-174:256) 39S ribosomal protein L30, mitochondrial n=1 Tax=Lepeophtheirus salmonis RepID=C1BUP3_9MAXI E=2e-12 s/c=0.87 id=35% cov=56% ---------------------------------LVSRVKTLKHEPYWHKRTCESIGLGqhaRIGKVVALPNLPSFSKKLHDVKHLVKITPIRFPSNFDTK D-------------------- >UniRef50_Q035A1(6-60:61) 50S ribosomal protein L30 n=90 Tax=Firmicutes RepID=RL30_LACC3 E=5e-09 s/c=1.13 id=20% cov=47% ----------------------------------ITLTRSAAHRLPKQRKIVKELGLARVNSSVIKPDNAATRGAIFQISHLVSVEEIK----------- ------------------ >UniRef50_B3V5I3(3-80:156) Ribosomal protein L30/L7E n=8 Tax=cellular organisms RepID=B3V5I3_9EURY E=6e-08 s/c=0.75 id=21% cov=44% --------------------------------YLVIRARSDRGVTKKIRDTMAMLNLTRVNHAVLLPETPSYAGMLQKTKDFV----------------- ------------------ >UniRef50_C4VA71(76-132:239) Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VA71_NOSCE E=2e-07 s/c=1.00 id=31% cov=47% -------------------------PKEPNFLVVVK-IKSSIGAPPRQRSILKLLRLKRTNSAVLVKNNKSMKRMLQFAK-------------------- ------------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 0 * * * * * * * * * * * 1 0 * * * * * * 1547 0 0 F 2 * * * * 0 * * * * * * * * * * * * * * * 2 0 * * * * * * 1596 0 0 T 3 * * * * * * * * * * * * * * * * 0 * * * 3 0 * * * * * * 1596 0 0 R 4 * * * * * * * * 1713 * * * * * 525 * * * * * 4 0 * * * * * * 1596 0 0 S 5 2381 * * * * * * * * * * * * * * 308 * * * * 5 0 * * * * * * 1596 0 0 R 6 * * * * * * * * 2744 * * 2736 * * 513 * * * * * 6 0 * * * * * * 1596 0 0 I 7 * * * * * * * 203 * 2932 * * * * * * * * * * 7 0 * * * * * * 1979 0 0 P 8 * * * * * * * * * * * * 0 * * * * * * * 8 0 * * * * * * 1979 0 0 D 9 * * 1348 2193 * * * * 2740 * * * * * * * * * * 2066 9 0 * * * * * * 1979 0 0 K 10 * * * 1833 * * * * 1977 * * 3114 * * * 3171 * * * 2066 10 0 * * * * * * 1979 0 0 V 11 * * * * * 2349 * * * 2942 * * * * * * 1948 1270 * * 11 0 * * * * * * 2130 0 0 F 12 * * * * 700 * * * * 3286 * * * * * * * * * 1826 12 0 * * * * * * 2315 0 0 Q 13 3131 * * * * * * * * * * * * 1160 * * 2678 * * 1826 13 0 * * * * * * 2315 0 0 P 14 3844 * * 3131 * * * * * * * * 599 * * * * * * 2678 14 0 * * * * * * 2315 0 0 S 15 * * * * * * * * 2653 * * * * * 813 2992 * * * 2773 15 0 * * * * * * 2341 0 0 P 16 * * * * * * 3035 * * * * * 679 * * 3413 2647 * * * 16 0 * * * * * * 2523 0 0 E 17 * * * 1660 * 4323 * * 3413 * * * 1269 * 3004 * * * * * 17 0 * * * * * * 2523 0 0 D 18 * * 730 1833 * * * * * * * * 3102 * * * * * * * 18 165 * 3207 * * * * 2767 0 0 H 19 * * * * * * 0 * * * * * * * * * * * * * 19 232 2752 * 1000 1000 0 * 2614 1000 1000 E 20 * * * 649 * * * * 3207 * * * * 1976 * * * * * * 20 397 * 2056 * * * * 2767 0 0 K 21 * * * * * * * * 516 * * 2710 * * * * * 2757 * * 21 0 * * * * * 0 2476 0 1490 Y 22 * * * * 2710 * * * * * * * * * 2468 * * * 2757 948 22 0 * * * * * 0 2476 0 1490 G 23 * * 3541 2468 * 1209 * * * * * * 2757 2710 * * * * * * 23 0 * * * * 0 * 2476 0 1490 G 24 * * 1520 3102 * 903 * * * * * * * * * * * * * * 24 210 * 2883 * * * * 2767 0 0 D 25 * * 1119 * 2907 * * * * * * * 1299 * * * * * * * 25 0 * * * * * 0 2523 0 1000 P 26 2822 * * * * * * * * * * * 220 * * * * * * * 26 0 * * * * * 0 3137 0 1000 Q 27 * * 4374 2665 * * * 2719 1491 * * * * 3010 * * * 4597 * 3048 27 0 * * * * 0 * 3325 0 1000 Y 28 * * 4745 961 * * * * * * * 3143 * 2706 * 4207 3269 * * 5333 28 0 * * * * * * 3545 0 0 P 29 3102 * * * * * * * * * * * 179 * * * * * * * 29 0 * * * * * * 3488 0 0 H 30 4102 * 4405 * * * 1632 * * * * 4001 2278 * * 2213 3513 * * * 30 0 * * * * * * 3471 0 0 K 31 * * * * 3955 * * * 434 3383 * * * 4575 4124 * * * * * 31 62 4575 * 2807 222 * * 3648 1000 0 L 32 * * * * * * * 3909 * 177 * * * * * * * 4349 * * 32 0 * * * * * * 3648 0 0 H 33 * * * * 2152 * 1446 * * 3684 * * * * * * * 4099 2395 3615 33 0 * * * * * * 3902 0 0 I 34 3674 * * * 4796 * * 2911 * 1788 2339 * * * 3830 * * 2358 * * 34 0 * * * * * * 4433 0 0 V 35 5011 * * * * * * 1200 * 5583 * * * * * * * 963 * * 35 0 * * * * * * 4992 0 0 T 36 * 5397 * 6384 * * 6016 5205 4343 * * * * 3935 4030 5197 700 * 3276 * 36 27 * 5765 * * * * 4992 0 0 R 37 * * * * * * * 4518 * 1419 * * * 1862 1810 * * * 5496 * 37 0 * * * * 0 * 5007 0 1000 I 38 4741 5824 * * * * * 2269 6446 4392 5822 * * * 4140 6486 3144 1338 * 3572 38 0 * * * * * * 5008 0 0 K 39 6435 * * * * 5009 * * 916 * * * * 5194 1322 * * * * * 39 0 * * * * * * 5008 0 0 S 40 5796 * 5029 * * 3901 * * * * * 4558 3733 * 4254 540 5226 * * * 40 0 * * * * * * 5008 0 0 T 41 3070 * 5242 * 3794 7101 * 3784 * 2306 6511 * 4132 * 4649 3871 2354 4214 * 3745 41 0 * * * * * * 5008 0 0 K 42 4077 * * * 6504 * 5898 948 2479 5323 6232 4680 * * 4890 3774 * 5010 * * 42 0 * * * * * * 5008 0 0 R 43 4498 * * * * 624 4336 * 5723 * * * * 6487 2806 5194 4558 * * 6112 43 0 * * * * * * 5008 0 0 R 44 3297 3842 * 4124 * * 5330 4966 5948 4079 4702 3024 * 4481 1727 * 4140 3939 * 6810 44 63 4558 * 0 * * * 5008 1000 0 P 45 * * * * * * 6504 4736 3523 3927 * 6417 616 * 5635 4386 3912 * * * 45 0 * * * * * * 5008 0 0 Y 46 4370 * * 3368 5508 * 4252 * 2430 5822 5275 * 2651 4378 5767 6446 * 6487 3833 2103 46 0 * * * * * * 5008 0 0 W 47 6009 * 3817 5773 6416 5897 6043 4558 2335 * * 5232 6465 5087 2942 4675 3776 6315 2015 4597 47 0 * * * * * * 5008 0 0 E 48 7421 * 5826 2385 * * 2643 3299 4644 * 6115 * * 1547 * 6149 3912 4952 * 6169 48 0 * * * * * * 5139 0 0 K 49 * 6750 * * * 6177 * 5748 1081 5203 * 5802 * 6487 1373 6193 5507 7082 * * 49 0 * * * * * * 5154 0 0 D 50 2420 * 2453 3629 * 5015 * * 2193 4435 5809 4882 * 5149 2866 5126 6963 * * * 50 0 * * * * * * 5153 0 0 I 51 4744 6962 * * * * 5357 2312 * 5868 6244 4459 * * * 5063 1155 2523 * * 51 0 * * * * * * 4974 0 0 I 52 4995 5124 * 4867 * * * 2563 * 1304 3734 * * * * * * 1964 * * 52 0 * * * * * * 5009 0 0 K 53 3353 * 4578 3088 6685 * 5285 4554 1635 * 6485 4388 * 6553 2241 6083 6276 4879 * * 53 0 * * * * * * 5009 0 0 M 54 1857 6661 4880 3529 6254 2670 6272 * 4591 4181 3912 5398 * 5470 * 2718 5439 5259 * * 54 0 * * * * * * 5009 0 0 L 55 * * * * 3894 * * 4554 * 318 3921 * * * * * * * * 5507 55 37 5300 * 0 * * * 4966 1000 0 G 56 * * * * * 230 5887 * 4435 * * 4378 * * 4783 * * * * * 56 0 * * * * * * 4966 0 0 L 57 5308 * * * 4972 * * 4710 4781 204 * * * * * * * * * * 57 32 5516 * 1585 585 * * 4976 1000 0 E 58 6610 * 2895 4605 * 3674 4275 * 1976 * * 4639 * 4960 2178 6756 3256 * * 5450 58 181 3083 * 400 2048 * * 4976 2376 0 K 59 * * 6047 3974 * 4979 5342 * 827 * * 6290 * 5829 1934 * * * * 6792 59 20 6211 * 1585 585 * * 4976 1000 0 A 60 4475 6571 * * 6229 6247 6289 2130 5285 3432 3803 5516 4173 4894 2823 4778 3876 2944 * * 60 0 * * * * * * 4976 0 0 H 61 * * 7742 7155 6002 2130 2460 * 4778 6545 5562 1725 * 4874 3565 4309 6531 * * 6403 61 18 6360 * 0 * * * 4976 1000 0 T 62 4537 * 2801 6403 5465 * 3360 * 2613 * * 5081 * 2280 3538 2905 4653 * * 5415 62 0 * * * * * * 4976 0 0 P 63 3493 5944 * 3903 5896 * 7041 3513 5582 5465 3537 * 3527 4769 7206 2885 2345 3409 5516 6979 63 0 * * * * * * 4976 0 0 Q 64 5578 * * 5308 * * * 4278 4176 6476 6979 * * 4903 3254 4413 5497 820 * 4212 64 0 * * * * * * 4976 0 0 V 65 5457 6887 * 2561 4057 * * 1962 6043 3915 * 5465 * * * 6448 4436 2004 * 3805 65 20 6176 * 0 * * * 4976 1000 0 H 66 * 6364 * * 3568 * 1994 * 3313 2367 * * * 3605 3718 * * 2681 * 4513 66 32 5500 * 2000 415 * * 5013 1000 0 K 67 5945 * 4393 2657 6213 * * 5506 1496 * * 4337 2627 4139 3518 6266 * 5709 * * 67 0 * * * * * * 5012 0 0 N 68 4939 * 1587 4826 6834 7170 6033 * 4705 6205 * 1322 * 6432 * 6825 6616 3540 * * 68 0 * * * * * * 5012 0 0 I 69 * 5139 6291 * * * * 3322 * 5495 * 2604 * * * 2375 1086 6896 * * 69 0 * * * * * * 5012 0 0 P 70 3226 * 5784 5349 * * * * 5661 * * * 469 * 6328 4233 5012 6457 * * 70 0 * * * * * * 5012 0 0 S 71 2631 * 4511 2573 7355 5409 * 5767 5506 4356 6874 * * 2911 * 1767 4874 4699 * * 71 0 * * * * * * 5012 0 0 V 72 5495 * * * 4723 * * 1606 * 4055 3521 4283 * 4505 * * 3509 1960 * 5388 72 0 * * * * * * 4895 0 0 N 73 2946 4633 6715 * * * 7094 * 4537 3563 * 1908 * 3657 1705 5512 * 6497 * * 73 0 * * * * * * 4895 0 0 A 74 4110 * * 4973 * 658 5762 * 5512 * * 5024 * 5874 4436 4096 3581 * * * 74 0 * * * * * * 4895 0 0 K 75 6615 * 5588 4023 * * * 5505 3020 3509 1182 5640 * 2965 3681 7069 * * * * 75 0 * * * * * * 4895 0 0 L 76 6032 * * * * * * 1634 * 911 * * * * * * * 2936 * * 76 0 * * * * * * 4895 0 0 K 77 4194 * 4738 6450 4607 * 4097 * 3210 5223 4950 2363 * 4003 3959 4668 4793 * 2310 4983 77 0 * * * * * * 4895 0 0 V 78 3850 * 5512 4545 4952 5505 * * 1045 5400 6669 * 4836 3515 4586 5224 4812 3898 * * 78 0 * * * * * * 4895 0 0 V 79 5691 * * * * * * 2165 * 3856 * * * * * * 4737 619 * * 79 0 * * * * * * 4895 0 0 K 80 5140 * * 6122 * * 6076 7062 801 6077 * 6085 5016 4826 3050 2868 * * * 7065 80 0 * * * * * * 4895 0 0 H 81 * * 4896 3227 * * 398 * * * * 6774 * * 5831 * * * * 3755 81 0 * * * * * * 4872 0 0 L 82 * * * * 5304 * * 4780 * 212 3743 * * * * * * * * * 82 0 * * * * * * 4872 0 0 I 83 * * * * * * * 1727 * 3055 * * * * * * * 792 * * 83 0 * * * * * * 4872 0 0 R 84 6698 * 5295 2032 * * 5530 * 1830 * 5589 6459 * 4648 2557 3596 3620 6426 * * 84 0 * * * * * * 4831 0 0 I 85 * 6254 * * * * * 1660 * 4189 * * * * * * * 700 * * 85 0 * * * * * * 4831 0 0 K 86 * * * 903 * * * * 2755 * * * * 3303 3494 * 3505 4688 * * 86 0 * * * * * * 4798 0 0 P 87 * * * 1768 * 4132 * * 5879 5110 * 4929 895 * * * 4933 * * * 87 0 * * * * * * 4655 0 0 L 88 * * * * * * * 2607 * 1453 * * * * * * 5128 1178 * * 88 0 * * * * * * 4636 0 0 K 89 * * 4882 2309 * * 5039 4693 1746 * * 4210 * 5195 2783 4015 3830 * * 4705 89 0 * * * * * * 4526 0 0 L 90 4599 * * 4104 1530 * * * 4243 2209 4021 * 4435 * * * 3900 4123 4237 * 90 0 * * * * * * 4058 0 0 P 91 * * * 4171 * * * * 2625 * * * 453 * * * * 4272 * * 91 0 * * * * * * 3848 0 0 Q 92 * * 2512 * * 4024 * * 4250 * * 1934 * 2482 * 3971 * * * 2279 92 0 * * * * * * 3574 0 0 G 93 * * * 4024 * 384 * * 4162 * * 3103 * * * * * * * * 93 98 3928 * 0 * * * 3574 1000 0 L 94 * * * 1740 3148 * * * * 1066 4135 * * * * * * 4228 * * 94 0 * * * * * * 3574 0 0 P 95 * * 3971 * * * * * * * * * 95 * * * * * * * 95 270 4250 3079 0 * * * 3574 1000 0 T 96 3625 * * 3114 * * * * * * * * * 5053 4113 4233 594 * * * 96 0 * * * * 983 1017 3506 0 1596 E 97 3826 * 4069 1413 * * * 2828 2030 * * * 4153 * * 4253 * * * * 97 78 * 4253 * * 0 * 3483 0 1000 E 98 * * 1596 1762 * 3577 * * * * * 4662 * 3073 * 2919 * * * * 98 0 * * * * * 0 3560 0 1000 D 99 * * 622 2431 * 3992 * * * * * 4980 * * * * 3837 * * * 99 0 * * * * 0 * 3438 0 1000 M 100 * 3947 * * 4122 * * 2491 * 3929 2226 * 3160 * * * * 3086 * 2389 100 0 * * * * * * 3481 0 0 A 101 3393 * 4153 4075 3842 3101 * * 3460 2938 * 3578 * 4088 3451 3357 * * 4321 * 101 0 * * * * * * 3481 0 0 N 102 2743 * 4438 3098 * 1772 3799 * * * * 4140 * * * 2352 * * * 3828 102 0 * * * * * * 3481 0 0 T 103 3373 3037 * * * * * * * 3578 * * * * * * 643 * * 4122 103 0 * * * * * * 3481 0 0 C 104 * 3011 * 3578 * * 3731 3284 * 4075 * * * 3828 3929 3842 * 3521 4088 2299 104 0 * * * * * * 3481 0 0 L 105 * * * * * * * 3271 * 299 * * * * * * * 3578 * * 105 0 * * * * * * 3481 0 0 K 106 3842 * 4321 4645 3578 5307 3105 * 1575 3929 * 3480 * 4075 3947 * * * * * 106 0 * * * * * * 3481 0 0 S 107 * * 4122 2444 * * * * * 3828 * * 2190 * 5307 1579 4321 * 4075 * 107 0 * * * * * * 3481 0 0 N 108 * * 2517 4321 * * * * 3480 * * 934 * * * * 2622 * * * 108 0 * * * * * * 3481 0 0 G 109 * * 4523 * * 64 * * * * * * * * * * * * * * 109 0 * * * * * * 3481 0 0 E 110 * * 2811 718 * * * * * * * * * 3669 2548 * * * * * 110 0 * * * * * * 3358 0 0 L 111 * 2314 * * 2033 * * * * 850 * * * * * * * * * * 111 0 * * * * * * 3258 0 0 V 112 * * * 3531 3560 * * 2938 * 2182 * * * * 3938 * * 1277 * * 112 0 * * * * * * 3258 0 0 V 113 * * * * * * * 1438 * * * * * * 3560 * * 873 * * 113 0 * * * * * * 3258 0 0 R 114 * * 2775 * * * 2309 * 2241 * 3125 * * 2510 2734 * * * * * 114 0 * * * * * * 2966 0 0 W 115 * * * * * * * * 1302 * * * * * 1580 * * * 1943 * 115 0 * * * * * * 2775 0 0 L 116 * * * * * 2759 1691 * * 2498 * * 3446 * 2922 * 2817 * * * 116 0 * * * * * * 2670 0 0 L 117 * * * * * * * * * 0 * * * * * * * * * * 117 0 * * * * * * 2670 0 0 N 118 * * * 1575 * * * * 1902 * * 3636 * 2892 * 2460 * * * * 118 0 * * 0 * * * 2375 0 0 //