HHsearch 1.5 NAME c4uzzB_ FAM FILE c4uzzB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4uzzB_.a3m DATE Sat Nov 8 08:18:36 2014 LENG 65 match states, 65 columns in multiple alignment FILT 19 out of 23 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4084 0.1383 SEQ >ss_dssp CCCHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHTTCTTTCSCTTCHHHHHHHHHHHHHHHTCCC >sa_dssp EEEDEDDDCEDCDEBDEECEEECEEDCCCDBBEBDDBBEEBDDDEDBECAECCCEECEDDEEEEE >ss_pred CCHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC >ss_conf 95101537789999830589888999999988883721002124799999999999998530689 >Consensus xDExFaSexxRLaQLTNKcxxxdleyyIxeagxIlgitxklxxxxxaKxILxxvfxxivxfKkxn >c4uzzB_ ASDEFASEKVRLAQLTNKCNNNDLDYYIKESGDILGVTDKVKNKHDAKAILRYVLEELINFKKLN >UniRef50_A8BRE5(264-317:322) IFT complex B n=1 Tax=Giardia lamblia ATCC 50803 RepID=A8BRE5_GIALA E=1e-05 s/c=0.95 id=42% cov=85% ---ELASEQTRLNKLASKCTNSDVEFFLRQAGDLLNIGGS------PKEILYHVLVSTVNFKK-- >UniRef50_A2DTM4(332-393:397) Putative uncharacterized protein n=2 Tax=Trichomonas vaginalis RepID=A2DTM4_TRIVA E=1e-07 s/c=0.93 id=29% cov=97% -NEIFASKTARLAMLAQKTPPKNIEKFVMQTAKILNVGQKLPQNYSAKDVLEYVFKYVVRCKR-- >UniRef50_D2UXV1(360-425:479) Putative uncharacterized protein n=1 Tax=Naegleria gruberi RepID=D2UXV1_NAEGR E=2e-17 s/c=1.36 id=48% cov=100% -DEQFASEDVRLAQLTNRCTDEDADYFIQKAGEIVGVTKLLKSEYsfSAKHILELMFRQIVQFKKVN >UniRef50_A8PC39(365-429:466) Putative uncharacterized protein n=1 Tax=Brugia malayi RepID=A8PC39_BRUMA E=9e-16 s/c=1.30 id=45% cov=100% -DDMFSSADVRLAQLTNKCEESDLEYFLNEAGEIYDITKCLPENdRGPKKVLEFVLYQLAEFKKFN >UniRef50_Q9TVX8(365-427:472) Protein R31.3, confirmed by transcript evidence n=2 Tax=Caenorhabditis RepID=Q9TVX8_CAEEL E=2e-11 s/c=1.12 id=27% cov=97% -DEQFSSPEIQLSQLANRSEEEDLIFFIEKAGEITGISAELtRSERTPKKIIELAVSKLMLFKR-- >UniRef50_UPI0000DB6B58(292-360:361) PREDICTED: similar to intraflagellar transport protein 52 n=1 Tax=Apis mellifera RepID=UPI0000DB6B58 E=1e-09 s/c=0.93 id=35% cov=92% -DEAFSSDLLKLLQLTNKymatkdlSKDMELDHYIREFGSIIRISNS--ETHSAKEVLNIVFQSICSYK--- >UniRef50_UPI0000D56A68(348-415:418) PREDICTED: similar to predicted protein n=1 Tax=Tribolium castaneum RepID=UPI0000D56A68 E=5e-11 s/c=1.01 id=35% cov=95% -DEAFSSVFSKLAQFTNKYTmtttkidDDDLEFYIKECSKIVKVEGQMD---GAASILHHMGEQIAKFKSID >UniRef50_UPI000186EFEB(350-418:646) ngd5/osm-6/ift52, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EFEB E=1e-09 s/c=0.93 id=36% cov=89% -DEAFSSDKTRLAQITNKCMPKkeddddnydeenNLIYYIQECTQIVRPYNDITEYSNPRQILHDLAVEL------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 S 2 * * 232 * * * * * * * * 3364 * * * 4283 * * * * 2 0 * * * * * * 3222 0 0 D 3 * * 2504 280 * * * * * * * * * * * * * * * * 3 0 * * * * * * 3222 0 0 E 4 1646 4039 * 2066 * * 4634 3610 * * 4370 * * 3071 * 4228 4717 * * * 4 0 * * * * * * 3396 0 0 F 5 * * * * 146 * * * * 3377 * * * * * * * * * * 5 0 * * * * * * 3396 0 0 A 6 942 * * * * * * * * * * * * * * 1060 * * * * 6 0 * * * * * * 3396 0 0 S 7 * * * * * * * * * * * * 4087 * * 87 * * * * 7 0 * * * * * * 3396 0 0 E 8 4370 * 2943 1054 * * * * 3610 * * 4217 2894 * * * * 3837 * * 8 0 * * * * * * 3396 0 0 K 9 * * 3416 3762 2438 * 4756 * 2170 4104 * * * 3377 4087 4634 2886 * * * 9 0 * * * * * * 3396 0 0 V 10 2672 * * * * * * 3762 * 2716 * 4228 * * * 3837 2241 1825 * * 10 0 * * * * * * 3396 0 0 R 11 * * * * * * * * 2459 * * * * 3762 426 * * * * * 11 0 * * * * * * 3396 0 0 L 12 * * * * * * * * * 0 * * * * * * * * * * 12 0 * * * * * * 3396 0 0 A 13 601 * * * * * * * * 4104 * 3377 * * * 2424 * * * * 13 0 * * * * * * 3396 0 0 Q 14 * * * * * * * * 3377 * 3610 * * 380 * 4228 * * * * 14 0 * * * * * * 3396 0 0 L 15 * * * * 3837 * * 3186 * 286 * * * * * * * * * * 15 0 * * * * * * 3396 0 0 T 16 1791 * * * * * * * * * * * * * * * 492 * * * 16 0 * * * * * * 3396 0 0 N 17 * * * * * * 4756 * * * * 350 * 3610 * 3377 * * * * 17 0 * * * * * * 3396 0 0 K 18 * * * * * * * * 183 * * * * * 3071 * * * * * 18 171 3159 * 2807 222 * * 3396 1221 0 C 19 * 594 * * * * * * * * * * * * * 2429 3610 * * 3837 19 91 4039 * 1585 585 * * 3396 1000 0 N 20 * * * 3034 * * 4228 * 3095 * 3799 3308 3610 * * 2932 1636 * * * 20 190 3020 * 2223 348 * * 3396 1467 0 N 21 4087 * 1839 1904 * * * * * * * 2374 2702 * * 4387 * * * * 21 0 * * * * * * 3396 0 0 N 22 * * 2025 1508 * * * * 2269 * 4104 4639 * * * 3368 * * * * 22 108 3799 * 3585 126 * * 3396 1000 0 D 23 * * 570 3159 * * * * * * * 2221 * * * * * * * * 23 0 * * * * * * 3396 0 0 L 24 4465 * * * * * * 3610 * 606 * * * * * * * 2211 * * 24 0 * * * * * * 3396 0 0 D 25 * * 2341 746 * * * 2781 * * * * * 4039 * * * * * * 25 0 * * * * * * 3396 0 0 Y 26 * * * * 1562 * 4104 * 3610 * * * * * * * * * * 940 26 0 * * * * * * 3396 0 0 Y 27 * * * * 1386 * * * * * * * * * * * * * * 696 27 0 * * * * * * 3396 0 0 I 28 * * * * * * * 658 * 3368 * * * * * * * 1892 * * 28 0 * * * * * * 3396 0 0 K 29 * * * 3762 * * * * 2703 4087 2886 4370 * 3094 1505 * 4039 * * * 29 0 * * * * * * 3396 0 0 E 30 * * * 723 * * * * 2671 * * * * 2077 * * * * * * 30 0 * * * * * * 3396 0 0 S 31 1058 2026 * * 3159 * * * * * * * * * * 3636 3610 * * * 31 0 * * * * * * 3396 0 0 G 32 2048 * * * * 698 * * * * * * * * * 3837 3799 * * * 32 0 * * * * * * 3396 0 0 D 33 4217 * 1626 2144 * * 4228 * 2719 * * * * 3799 * 3071 * * * * 33 0 * * * * * * 3396 0 0 I 34 * * * * * * * 243 * 3377 * * * * * * * 4087 * * 34 0 * * * * * * 3396 0 0 L 35 * * * * * * * 3298 * 1069 3151 * * * * * 3762 2418 * 4370 35 0 * * * * * * 3396 0 0 G 36 * * 4370 * * 944 * * 3837 * * 2489 * * 2444 * * * * * 36 0 * * * * * * 3396 0 0 V 37 * * * * * * * 1074 * 4228 * * 3799 * * * * 1322 * * 37 79 * 4228 * * * * 3396 0 0 T 38 * * * 3782 * 2852 * * * 4539 * * * * * 2153 1173 * * 3692 38 0 * * * * * 0 3358 0 1000 D 39 3719 * 3499 * * 2528 * * 2625 * * 2090 2868 3507 * 4634 * * * * 39 74 * 4318 * * 0 * 3358 0 1000 K 40 * 4287 3798 3758 * * * 4223 1106 4438 * * * 3840 4605 2966 * * * * 40 289 * 2462 * * * 0 3300 0 1000 V 41 * * * * * * * 3536 * 522 3582 * * * * * * 2903 * * 41 355 2195 * 1066 937 * 0 3062 1906 1859 K 42 * * 3582 3743 * * * * 2571 * * * 1708 3934 2572 4389 3536 * * * 42 348 2933 3582 0 * 833 1189 3062 1253 1859 N 43 * * 3628 1219 * * * * * * * 2469 * 3274 * 2282 * * * * 43 105 3827 * 1000 1000 * 0 3115 1000 1694 K 44 * * * 2888 * * * * 4189 * * 1751 * 4453 3318 2710 2942 * * 3574 44 94 3984 * 0 * * 0 3115 1000 1694 H 45 4055 * * * * * 3008 4418 * 4044 * * * 3334 1442 3574 * * * 2673 45 79 4227 * 1000 1000 455 1886 3115 1000 1694 D 46 * * 1653 * * 3004 * * 4491 * * 3007 * * * 1934 2977 * * * 46 94 3981 * 0 * 0 * 3296 1000 1000 A 47 761 * * * * * * * * * * * 1287 * * * * * * * 47 0 * * * * * * 3396 0 0 K 48 3837 * * * * * * * 404 * * * * 4523 2936 * * * * * 48 0 * * * * * * 3396 0 0 A 49 2646 * 3610 2695 * 4217 2043 * 3034 * * * * 3799 * 3140 * * * * 49 0 * * * * * * 3396 0 0 I 50 * * * * * * * 997 * 3063 * * * * * * * 1398 * * 50 0 * * * * * * 3396 0 0 L 51 * * * * * * * 3093 * 283 4039 * * * * * * * * * 51 0 * * * * * * 3396 0 0 R 52 4039 * 4087 1346 * * 2432 * * * * 3159 * * 4639 4228 * * * 3377 52 0 * * * * * * 3396 0 0 Y 53 * * 3799 4228 3496 * 2065 4104 * 3071 * * * 4387 * * * * * 1634 53 0 * * * * * * 3396 0 0 V 54 3762 * * * * * * 2856 * 3799 3117 * * * * * * 734 * * 54 0 * * * * * * 3396 0 0 L 55 3799 4039 * * 1013 3837 * * * 2131 * * * * * * * 3762 * * 55 0 * * * * * * 3396 0 0 E 56 4756 * * 2703 4717 * 4039 * 3610 * 4217 * * 3344 2667 3762 5119 2573 * 4370 56 0 * * * * * * 3396 0 0 E 57 * * * 2533 * * * * 2576 * * 4523 * 1616 4228 2695 * * * 3610 57 0 * * * * * * 3396 0 0 L 58 * * * * * * * 1834 * 1563 * * * * * * 3377 1812 * * 58 0 * * * * * * 3396 0 0 I 59 2418 3999 * * * 3919 * 3478 * * 3650 * * * * 4112 * 1130 * * 59 0 * * * * * * 3262 0 0 N 60 * * * 2135 * * * * 2802 3650 * 2099 * 3209 3519 3054 * * * * 60 0 * * * * * * 3262 0 0 F 61 * 3519 * * 577 * * * * * * * * * * * * * * 2044 61 0 * * * * * * 3262 0 0 K 62 * * * * * * * * 0 * * * * * * * * * * * 62 0 * * * * * * 3262 0 0 K 63 * * * * * * * * 685 * * * * * 1832 3361 * * * * 63 0 * * * * * * 3014 0 0 L 64 * * * * 3342 * * 2897 * 1174 * * 3119 * * * * 2259 * * 64 0 * * * * * * 2460 0 0 N 65 * * 2897 * * * * * * * * 208 * * * * * * * * 65 0 * * 0 * * * 2460 0 0 //