HHsearch 1.5 NAME c4uzyB_ FAM FILE c4uzyB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4uzyB_.a3m DATE Sat Nov 8 08:15:39 2014 LENG 50 match states, 50 columns in multiple alignment FILT 24 out of 28 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.3 EVD 0.4729 1.9778 SEQ >ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCSSSSCCCCC >sa_dssp EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDDEEDEEEDEEEEDEE >ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC >ss_conf 96777654888874200158777678788311223699999877542159 >Consensus xlIxPxFexplPplqpAVfpPxxxExppPxLeLFDLDexFaSltnkcxxx >c4uzyB_ NLIPPSFETPLPPLQPAVFPPTIREPPPPALELFDLDESFASLTNKCHGE >UniRef50_B8CFI0(316-354:382) Intraflagellar transport protein, bld1, osm-6 (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8CFI0_THAPS E=6e-05 s/c=1.24 id=62% cov=80% -LIEPHFECPHPPLRLATHQPRMLNPPPPALELFDLDECF---------- >UniRef50_UPI000179303D(491-531:540) PREDICTED: similar to predicted protein, partial n=1 Tax=Acyrthosiphon pisum RepID=UPI000179303D E=0.0002 s/c=1.14 id=57% cov=84% -LIPPTFNDTLPALQFAVYPPPFQELSSPFLELFDLDSIFGS-------- >UniRef50_A2DTM4(296-341:397) Putative uncharacterized protein n=2 Tax=Trichomonas vaginalis RepID=A2DTM4_TRIVA E=7e-13 s/c=1.63 id=57% cov=94% DIVTPVFDVALPPLTPAVFPPQMKEPEPPVLELFDLNEIFASKTAR---- >UniRef50_B9QBY7(393-449:770) Ngd5/osm-6/ift52, putative n=3 Tax=Toxoplasma gondii RepID=B9QBY7_TOXGO E=2e-12 s/c=1.29 id=53% cov=102% SVIKPEFVIPLPPLRPAVHPPFMPELPHPPLELFDIDAEIASprtrliqLANQCVDD >UniRef50_D2NUD9(321-360:434) MIP14443p n=17 Tax=Diptera RepID=D2NUD9_DROME E=2e-12 s/c=1.84 id=56% cov=82% -IIKPQFEIPLPNVQLATFPPIFSEPSAPPLELYDLDETFS--------- >UniRef50_C6LXM5(226-282:324) IFT complex B n=1 Tax=Giardia intestinalis ATCC 50581 RepID=C6LXM5_GIALA E=1e-05 s/c=0.89 id=56% cov=100% -LVNPSFEKPTPPLIPAVHFPVLPDPPgAPLLELFDLDTELASeqtrlnkLASKCTSD >UniRef50_Q9TVX8(329-385:472) Protein R31.3, confirmed by transcript evidence n=2 Tax=Caenorhabditis RepID=Q9TVX8_CAEEL E=1e-14 s/c=1.42 id=62% cov=100% -LVEPQFELPMPPFQPAVFPPTFQELPMPPLELFDLDEQFSSpeiqlsqLANRSEEE >UniRef50_UPI0000DA4648(66-101:185) PREDICTED: similar to Intraflagellar transport 52 homolog (Protein NGD5 homolog) n=1 Tax=Rattus norvegicus RepID=UPI0000DA4648 E=2e-07 s/c=1.57 id=59% cov=74% ------FEMLLPVLQPLFFPPEVRELPAPPLALFDLAETFFS-------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * 2385 * * * * * * * * 2858 * * * 577 * * * * 1 0 * * * * * * 1849 0 0 L 2 * * * * * * * 2808 * 346 * * * * * * * 3830 * * 2 0 * * * * * * 2302 0 0 I 3 * * * * * * * 267 * * * * * * * * * 2565 * * 3 0 * * * * * * 2302 0 0 P 4 3519 * * 3345 * * * * 3053 * * 3926 1939 5193 * 3960 2568 3224 * * 4 0 * * * * * * 2302 0 0 P 5 * * * * * * * * * * * * 0 * * * * * * * 5 0 * * * * * * 2302 0 0 S 6 4125 * * 2663 * * 3460 * 5097 * * 4664 * 1333 * 3414 3811 3981 * * 6 0 * * * * * * 2302 0 0 F 7 * * * * 0 * * * * * * * * * * * * * * * 7 0 * * * * * * 2376 0 0 E 8 * * 4120 419 * * * * * * * 3942 * 4023 * * * 3875 * * 8 0 * * * * * * 2376 0 0 T 9 5205 2883 3942 * * * * 3141 3978 4726 3884 * * * * * 1425 3089 * * 9 0 * * * * * * 2376 0 0 P 10 4120 * * * * * * * * 3884 * * 305 * * * 3942 * * * 10 0 * * * * * * 2376 0 0 L 11 * * * * * * 4187 * * 351 3948 * * 4924 * * 3978 * * * 11 0 * * * * * * 2376 0 0 P 12 * * * * * * * * * 3887 * * 101 * * * * * * * 12 0 * * * * * * 2376 0 0 P 13 3531 * * * * 3887 * * * * * 4467 613 * * 4191 5349 3884 * * 13 0 * * * * * * 2376 0 0 L 14 * * * * 4726 * * * * 341 5083 * * * * * 4773 3228 * * 14 0 * * * * * * 2376 0 0 Q 15 * * * 5069 * * * 3978 3328 * * * * 998 2491 * 3466 4710 * * 15 0 * * * * * * 2376 0 0 P 16 3424 * * * 3942 * * * * 3320 * * 588 * * 3712 * * * * 16 0 * * * * * * 2376 0 0 A 17 280 * * * * * * * * 3884 * * * * * 3202 * * * * 17 0 * * * * * * 2376 0 0 V 18 * * * * 3884 * * * * * * * * * * * 3320 265 * * 18 0 * * * * * * 2376 0 0 F 19 * * * * 528 * 2422 * * * * * * * * * * * * 3061 19 0 * * * * * * 2376 0 0 P 20 * * * 4023 3978 * * * * * * * 286 4187 * * * * * * 20 0 * * * * * * 2376 0 0 P 21 4023 * * * * * * * * * * * 92 * * * * * * * 21 0 * * * * * * 2376 0 0 T 22 2959 * 4924 3884 3875 * * 2520 * * * * 3942 3518 4187 2879 3320 3558 * * 22 0 * * * * * * 2376 0 0 I 23 * * * * 1517 * 4023 5279 * 1808 2469 * 5090 * * * * 3884 * * 23 0 * * * * * * 2376 0 0 R 24 * * * * * * * * 3385 4187 * * 2926 2566 1117 3509 * * * * 24 0 * * * * * * 2376 0 0 E 25 * * 2718 334 * * * * * * * 4187 * * * * * * * * 25 0 * * * * * * 2376 0 0 P 26 * * * * 4191 * * * * 918 * * 1265 * * * * * * * 26 0 * * * * * * 2376 0 0 P 27 3427 * * 4120 * * * * * * * * 436 * * 3181 * * * * 27 95 3978 * 0 * * * 2376 1000 0 P 28 2341 * * * * 5069 3875 * * * 4726 * 732 * * 3942 * * * * 28 0 * * * * * * 2376 0 0 P 29 * * * * * * * * * * * * 0 * * * * * * * 29 0 * * * * * * 2376 0 0 A 30 1975 * * 4191 3942 4023 * * 4924 3978 * * 1638 * * 4080 5069 4120 * * 30 0 * * * * * * 2376 0 0 L 31 * * * * * * * 4191 * 81 * * * * * * * * * * 31 0 * * * * * * 2376 0 0 E 32 3884 * 1864 605 * * * * * * * * * * * * * * * * 32 0 * * * * * * 2376 0 0 L 33 * * * * * * * * * 56 * * * 4715 * * * * * * 33 0 * * * * * * 2376 0 0 F 34 * * * * 123 * * * * * * * * * * * * * * 3612 34 0 * * * * * * 2376 0 0 D 35 * * 0 * * * * * * * * * * * * * * * * * 35 0 * * * * * * 2376 0 0 L 36 * * * * * * * 3875 * 102 * * * * * * * * * * 36 0 * * * * * * 2376 0 0 D 37 3884 * 265 4553 * * * * * * * 4120 * * * * * * * * 37 0 * * * * * * 2376 0 0 E 38 3875 * 3348 594 * * * * * 4553 * * * * * 3942 3978 * * * 38 0 * * * * * * 2376 0 0 S 39 2266 3609 * 1940 * * 4715 3028 * * 4924 * * 3434 * 5279 2862 * * * 39 0 * * * * * * 2376 0 0 F 40 * * * * 204 * * 3875 * 3978 * * * * * * * * * * 40 0 * * * * * * 2376 0 0 A 41 1023 * * * 3862 3914 * * * * * * * * * 1424 * * * * 41 104 3850 * 2807 222 * * 2331 1000 0 S 42 * * * * * * * * * * * * * 3852 * 180 4379 * * * 42 2083 388 * 2807 222 * * 2302 1965 0 L 43 * * * * * * * 3799 3444 350 * * * * * * * 4275 * * 43 0 * * * * * * 2109 0 0 T 44 1913 * * * 4275 * * * * * * * * * * * 550 * * * 44 0 * * * * * * 2109 0 0 N 45 3444 * * * * * 4486 * * * * 451 * * * 2921 * * * * 45 0 * * * * * * 2109 0 0 K 46 * * * * * * * * 515 * * * * 3482 2246 * * * * * 46 0 * * * * * * 2109 0 0 C 47 * 126 * * * * * * * * * * * * * 3585 * * * * 47 0 * * * * * * 1942 0 0 H 48 * * * 3443 * * 4095 * 2666 * * 3751 * * * 2873 1441 3147 * * 48 0 * * * * * * 2017 0 0 G 49 3253 * 1280 2561 * 3973 * * * * * 2854 * * * 3158 * * * * 49 0 * * * * * * 2014 0 0 E 50 * * 1007 993 * * * * * * * * * * * * * * * * 50 0 * * 0 * * * 1984 0 0 //