HHsearch 1.5 NAME c4uuzC_ FAM FILE c4uuzC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4uuzC_.a3m DATE Sat Feb 14 08:20:15 2015 LENG 53 match states, 53 columns in multiple alignment FILT 13 out of 17 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.8 EVD 0.5069 2.8423 SEQ >ss_dssp CCCCSSTTHHHHTCCCTTTSSCCSTTSCSSCCCCCCCCHHHHHHHHHHHHSCC >sa_dssp EEEEEDECDEEEEEEDEEEEEEEEEEEEEEEEEEEEEDEEDDDDDDEDDEEEE >ss_pred CCHHHCCCHHHHHHCCHHHHCCCHHHCCCCHHHHHHCCHHHHHHHHHHHHHCC >ss_conf 90111471687651382210008532112467676469999999999985249 >Consensus gexLxgDnmexDYRxxpeLDxYdxxgixlDxxxxxdlxxxxRraaexxlxrRD >c4uuzC_ GEELIGDGMERDYRAIPELDAYEAEGLALDDEDVEELTASQREAAERAMRQRD >UniRef50_A0BNH6(150-200:985) Chromosome undetermined scaffold_118, whole genome shotgun sequence n=2 Tax=Oligohymenophorea RepID=A0BNH6_PARTE E=1e-14 s/c=1.58 id=50% cov=98% GEELINDNMLNDYKPIPELDRYESDGID-DDEIHGEMDYEQRRRAEEEIQRR- >UniRef50_Q9XXI9(48-96:881) Protein Y17G7B.5a, partially confirmed by transcript evidence n=2 Tax=Chromadorea RepID=Q9XXI9_CAEEL E=2e-12 s/c=1.50 id=58% cov=94% ---LFGDDMERDYREQPELDQYSESGMD-DASDVGSLSVSARRAAEREMAQRD >UniRef50_Q7PTT5(59-109:197) AGAP012691-PA (Fragment) n=2 Tax=Diptera RepID=Q7PTT5_ANOGA E=1e-06 s/c=1.06 id=50% cov=98% GEELFGDNMEADYRPAPHLDRYDMD--DLDTEEYSDISQADRAAAEAEMRRRD >UniRef50_Q9LPD9(68-119:936) T12C22.19 protein n=16 Tax=Viridiplantae RepID=Q9LPD9_ARATH E=5e-05 s/c=0.94 id=31% cov=96% ---LFNDTFMNDYRKMDENDQYESNGIDDSVDDERDLGQAmlDRRAADADLDARE >UniRef50_D0NHV7(138-187:986) DNA replication licensing factor Mcm2, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NHV7_PHYIN E=8e-05 s/c=0.96 id=35% cov=96% GEDL-GENAEMDYRRMETLDRYDTA--MLDTRQYDDMDRDTRRAVEDELNRRD >UniRef50_Q9BI22(47-95:871) MCM2 protein (Fragment) n=1 Tax=Dugesia japonica RepID=Q9BI22_DUGJA E=8e-11 s/c=1.39 id=52% cov=94% ---LINDSMERDYRRIPELDSYEAAGID-DESDVDEISQNERNVVEQELDRRD >UniRef50_B6ADZ4(66-115:971) DNA replication licencing factor MCM2, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6ADZ4_9CRYT E=4e-10 s/c=1.32 id=41% cov=96% GEDLYADNFLDDYQPDPELDRYDPD--ILDDTNYED-DPEARRRAEIALDRRD >UniRef50_UPI0001926276(65-108:962) PREDICTED: similar to MCM2 minichromosome maintenance deficient 2, mitotin (S. cerevisiae), partial n=1 Tax=Hydra magnipapillata RepID=UPI0001926276 E=3e-08 s/c=1.36 id=49% cov=85% -------NMEDDYRPIPHLDTYEQS--VLDDQEQSDLDVETRLEAERLMEKRD >UniRef50_C4R776(81-128:881) Protein involved in DNA replication n=4 Tax=Saccharomycetales RepID=C4R776_PICPG E=0.0004 s/c=0.95 id=31% cov=92% ---LIGDNMFDDYRQNRDQDHYDIDQI--DDNEYEQMDPEERRKVDKLLNEKD # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2169 0 0 E 2 * * * 0 * * * * * * * * * * * * * * * * 2 0 * * * * * * 2169 0 0 E 3 * * 1082 922 * * * * * * * * * * * * * * * * 3 0 * * * * * * 2169 0 0 L 4 * * * * * * * * * 0 * * * * * * * * * * 4 149 * 3349 * * * * 2866 0 0 I 5 * * * * 1387 * * 1181 * * * * * * * * * * * 2500 5 0 * * * * 0 * 2753 0 1000 G 6 3719 * * * * 609 * * * * * 1897 * * * * * * * * 6 0 * * * * * * 2866 0 0 D 7 * * 149 3349 * * * * * * * * * * * * * * * * 7 0 * * * * * * 2866 0 0 G 8 * * 3567 * * 3052 * * * * * 705 * * * 3776 3204 * * * 8 0 * * * * * * 2928 0 0 M 9 3440 * * * 1957 * * * * * 621 * * * * * * * * * 9 0 * * * * * * 2928 0 0 E 10 * * * 813 3323 * * * * 2794 2422 * * * * * * * * * 10 0 * * * * * * 2928 0 0 R 11 4036 * 2063 * * * * * * * 3440 1601 * * 1847 * * * * * 11 0 * * * * * * 2928 0 0 D 12 * * 0 * * * * * * * * * * * * * * * * * 12 0 * * * * * * 2928 0 0 Y 13 * * * * * * * * * * * * * * * * * * * 0 13 0 * * * * * * 2928 0 0 R 14 * * * * * * * * 3772 * * 3678 * 3816 363 * * * * * 14 0 * * * * * * 2928 0 0 A 15 3820 * * 3567 * * * * 2422 * * * 1347 3323 2598 * * * * * 15 0 * * * * * * 2928 0 0 I 16 4036 * 3816 * * * * 1577 * * 1886 2490 * 3567 * * * * * * 16 0 * * * * * * 2928 0 0 P 17 * * 3204 3440 * * * * * * * * 516 * 3323 * * * * * 17 0 * * * * * * 2928 0 0 E 18 4329 * 3323 669 * * 2951 * * * * * * * * * 3440 * * * 18 0 * * * * * * 2928 0 0 L 19 * * * * * * * * * 337 * 3204 * 3323 * * * * * * 19 0 * * * * * * 2928 0 0 D 20 * * 0 * * * * * * * * * * * * * * * * * 20 0 * * * * * * 2928 0 0 A 21 3820 * * * * * 2557 * 3678 * * * * 2043 1750 3776 3871 * * * 21 0 * * * * * * 2928 0 0 Y 22 * * * * * * * * * * * * * * * * * * * 0 22 0 * * * * * * 2928 0 0 E 23 * * 1083 1173 * * * * * * * * * * * 3567 * * * * 23 0 * * * * * * 2928 0 0 A 24 2369 * * 3567 * * * 3323 * * 4036 * 2191 3871 * 2461 3440 * * * 24 105 * 3837 * * * * 2928 0 0 E 25 2507 * 1606 2220 * * * * * * * 3069 * * * 2626 * * * * 25 722 * 1344 * * 0 * 2896 0 1000 G 26 3136 * * * * 454 * * * * * * * 2679 * * * * * * 26 0 * * * * * 0 2412 0 2185 L 27 * * * * * * * 869 * 1614 2993 * * * * * * * * * 27 245 * 2679 * * 0 * 2412 0 2185 A 28 3711 * 1011 * * * * 3659 * 3656 2388 * * * * * * 3680 * * 28 423 * 1975 * * * 0 2790 0 1000 L 29 * * 1818 * * * * * * 715 3222 * * * * * * * * * 29 0 * * * * 0 * 2602 0 2111 D 30 * * 166 * * * * * * * * * * * * 3204 * * * * 30 0 * * * * * * 2928 0 0 D 31 3567 * 1116 2375 * * * * * * * * * * * * 2708 3204 * * 31 0 * * * * * * 2928 0 0 E 32 * * 2486 1973 * * * * * * * 3323 * 3871 3440 2668 2746 * * * 32 0 * * * * * * 2928 0 0 D 33 * * 1298 1842 * * 3678 3772 * * * 3816 * 3440 * * * * * * 33 0 * * * * * * 2928 0 0 V 34 * * * 3204 3837 * 3772 * * 4329 * * * 3871 * * * 2132 * 1314 34 0 * * * * * * 2928 0 0 E 35 * * 2598 1645 * 2666 * * * * * * * * 3204 2006 * * * * 35 0 * * * * * * 2928 0 0 E 36 * * 1062 1570 * * * * * * * * * 3323 * 3567 * * * * 36 233 * 2746 * * * * 2928 0 0 L 37 * * * * * * * 2701 * 1189 1295 * * * * * * * * * 37 0 * * * * 0 * 2784 0 1224 T 38 * * 1051 * * 3204 * * * * * * * * * 1565 3820 * * * 38 0 * * * * * * 2928 0 0 A 39 3663 * * * * * * 3661 * * * * 2447 1602 3410 * * 2653 * 3716 39 0 * * * * * * 2875 0 0 S 40 2503 * 3410 1285 * 3718 * * * * * 3698 * * * 2591 * * * * 40 171 3161 * 1000 1000 * * 2875 1000 0 Q 41 2068 * 1986 2411 * * * * * * * * * 2689 * * 2591 * * * 41 0 * * * * * * 2875 0 0 R 42 * * * * * * * * 3661 * * * * * 119 * * * * * 42 0 * * * * * * 2875 0 0 E 43 3953 * * 3663 3718 * * * * 3797 * 3698 * * 663 * * * * * 43 0 * * * * * * 2875 0 0 A 44 965 * * 3797 * * * * 3172 * * * * * 2135 * * 3698 * * 44 0 * * * * * * 2875 0 0 A 45 478 * * * * * * * * * * * * * * * * 1826 * * 45 0 * * * * * * 2875 0 0 E 46 * * 1728 518 * * * * * * * * * * * * * * * * 46 0 * * * * * * 2875 0 0 R 47 2503 * 3410 3716 * * * 3787 3172 3661 * * * 3698 2071 3718 * * * * 47 0 * * * * * * 2875 0 0 A 48 2117 * 3161 1075 * * * * * 2451 * * * * * * * * * * 48 0 * * * * * * 2875 0 0 M 49 * * * * * * * 3716 * 875 1402 * * * * * * * * * 49 0 * * * * * * 2875 0 0 R 50 3522 * 1555 3797 * * * * * * * 2286 * 3716 2188 * * * * * 50 0 * * * * * * 2875 0 0 Q 51 3161 * * 3172 * * * * 3797 * * * * 2591 891 * * * * * 51 0 * * * * * * 2875 0 0 R 52 * * * * * * * * 3084 * * * * * 181 * * * * * 52 0 * * * * * * 2800 0 0 D 53 * * 216 2845 * * * * * * * * * * * * * * * * 53 0 * * 0 * * * 2772 0 0 //