HHsearch 1.5 NAME c4usiC_ FAM FILE c4usiC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4usiC_.a3m DATE Sat Dec 6 08:15:17 2014 LENG 109 match states, 109 columns in multiple alignment FILT 105 out of 223 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.4 EVD 0.3970 -1.3058 SEQ >ss_dssp CCCCTTCTTCCEEEEEEEECGGGHHHHHHHHHHHTCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEGGGHHHHHHHHHHHHCCSSTTCCEEEEEEECCCE ETTTTEECC >sa_dssp EDECEEDEECEBACABACACDECCEDADDCAEEEECEDDEDDECECEEEEEEEDEDECCCACADBCDEDACCACECADEABECDEEDCEECDDCDCEDDE DEEDEDECE >ss_pred CCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHEE ECCCCCCCC >ss_conf 9742117898517999998766689999999978998378999999864089655661799999678888999999998507897986699998854124 013588689 >Consensus xxxxxxxxxxxmkxIxAIIrxxxxxxVxxALxxxGxxGxTvxxvxGxGxxxxxxxxxkxxixivvxdxxxexiixxIxxxxxtgxxGdGxIfVxpVxxav xIrtgexgx >c4usiC_ QCDLSAFPGVKFFRIEAIFRPWRLPFVIDTLSKYGIRGLTNTPVKGVGEFGPSNLVDKEKLDIVVSRAQVDAVVRLVAASAYTGEIGDGKIFVHPVAEVV RIRTAETGL >UniRef50_UPI0001AF666B(1-100:108) nitrogen regulatory protein P-II GlnB n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF666B E=2e-11 s/c=0.70 id=21% cov=79% --------------VTAVVKQLALDDIKtNLLRTEGVSWIAVSAVHvyepqngraqfYRGVQYPTDIAPKVRFEVLVDDACVDEAVASITQAARFAENRD GELWICEVRTA---------- >UniRef50_B9ZJT5(1-100:116) Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJT5_9GAMM E=0.0005 s/c=0.46 id=21% cov=86% ----------QFVLLAAVVPRNRADRAIETVRREGAAGLTLLEGQGIAQLRRSPIMDlkdsaaRTVLLMVLEASIAERLLKCLDEELALSEVGNGFAFTL PIKDIAGIK------ >UniRef50_Q0ATA3(3-97:102) Nitrogen regulatory protein P-II n=1 Tax=Maricaulis maris MCS10 RepID=Q0ATA3_MARMM E=8e-12 s/c=0.75 id=24% cov=77% --------------LTAIISPEMVEPVEERLRRLSVPGLSVSHTKGYGAYKNFYQRDlmttKARLQLFLAEEHVADVVDAIRDVMGPAAEDGGILAVSPV D------------ >UniRef50_Q2BA90(1-103:222) PII family protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BA90_9BACI E=0.001 s/c=0.43 id=17% cov=43% -------------------------------------------ARGIGKNEQTSFLgleinhEKEVILMLIKEESAEEVITEVSSHLHFERPGTG----- --------------- >UniRef50_B6BH38(535-629:641) Permease, major facilitator superfamily n=13 Tax=Proteobacteria RepID=B6BH38_9PROT E=1e-07 s/c=0.60 id=18% cov=81% ----------PFSAVHIIVPRKNQDKALIAARDAGAGGVTIMDAHGMGLTEMDNFYNRlhsdptdVNLMFIVPTKKVDNIIFSIMHKLDIVGRGDGISYS YPIS------------ >UniRef50_C0EBC1(20-131:133) Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBC1_9CLOT E=0.0001 s/c=0.42 id=23% cov=72% ---------------------DKLDELMIKLAEAGVKGATIINSTGMGRtlynHQESALMNSLRalldpdrdenktIFTVV-DEAQEKAFHKVMNevVGD LARPDSGIIFTIPVDSV---------- >UniRef50_A6BDF8(117-227:232) Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A6BDF8_9FIRM E=4e-14 s/c=0.72 id=20% cov=97% ----TSMKDTDYELLVAIANQGYIDTVMDAARSAKAGGGTVIHAKGTGMELAKKYLgvslveEKEVILIVTKSREKNQIMKAIMEQAGLDSKERTIVFSL PVTSVAGIRMLEEDI >UniRef50_A8MM50(15-106:230) Putative uncharacterized protein n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MM50_ALKOO E=0.0004 s/c=0.50 id=19% cov=63% --------------------------------TVGATGATIFLGKGTVKNNfleflGLNEVKKEIVLIGATKDMEEKIHHHLTEKFHMDKPNHGIIFSVD LKKII--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * * * * * * * * * * * 0 * * * * * * 1 0 * * * * * * 1623 0 0 C 2 * 523 * * * * * * 1718 * * * * * * * * * * * 2 0 * * * * * * 2046 0 0 D 3 * * 655 1454 * * * * * * * * * * * * * * * * 3 0 * * * * * * 2772 0 0 L 4 2313 * * * 2181 * * 2611 * 1271 * * * * * * * * * * 4 0 * * * * * * 2772 0 0 S 5 * * 2695 * * * * * * * * * * 2935 * 2405 1563 * 2415 * 5 0 * * * * * * 3098 0 0 A 6 656 * * * 2415 * * * * * * * * * * 2491 * * * * 6 0 * * * * * * 3098 0 0 F 7 * * * * 2000 * * * 3351 * 1224 * * * 3123 * * 3198 * * 7 0 * * * * * * 3871 0 0 P 8 * * * * * * * * 1743 * * * 818 * * * * * 2899 * 8 0 * * * * * * 3871 0 0 G 9 * * 3318 3754 * 1840 * * * * * * 3551 * 2459 1841 * * * * 9 0 * * * * * * 4020 0 0 V 10 2114 * * * * * 3734 1938 * * 3644 * * * * 3679 3386 2482 * * 10 100 * 3894 * * * * 4140 0 0 K 11 * * 3267 4762 * * * * 1762 4398 * 2952 3503 2390 4362 * * * * 4056 11 72 4362 * 1585 585 * 0 5286 1000 1000 F 12 * * * * 2814 * * 5235 * 3599 595 * * * * * * 5866 5398 4454 12 26 * 5827 * * * 0 6058 0 1000 F 13 * * * 5110 4340 5726 6012 * 776 5940 * * * 4534 4778 3459 * 4835 * 3616 13 0 * * * * * 0 6048 0 1702 R 14 4438 * * 1759 * * 6020 6039 1729 3141 5523 * * 3385 4019 * 5765 * * 6038 14 50 4872 * 2100 383 0 * 6120 1402 1702 I 15 * * * * * * * 811 * 3032 5598 * * * * * * 1800 * * 15 0 * * * * * * 6611 0 0 E 16 4309 * 6475 2558 5283 * 5953 3740 3190 5505 4917 * * * 4160 4668 2362 2407 * 6820 16 0 * * * * * * 6611 0 0 A 17 622 4349 6374 * * 6540 * 3239 * 5269 * * * * * 6486 3364 4716 * * 17 0 * * * * * * 6616 0 0 I 18 * * * * 3028 * * 827 * 5582 5307 * * * * * 5590 2386 * 4172 18 0 * * * * * * 6627 0 0 F 19 5889 * * * 5420 * * 1173 * 3765 * * * * * 5519 6692 1281 * * 19 0 * * * * * * 6628 0 0 R 20 6646 * 3803 5017 * 4859 4313 6491 3237 * * 4150 3834 3273 1177 6246 * * * * 20 0 * * * * * * 6628 0 0 P 21 5913 * 5342 3595 * * 5766 6320 4033 5728 5514 6377 1403 4162 2643 4269 4893 4604 * 6572 21 0 * * * * * * 6628 0 0 W 22 5039 * 3132 2371 4214 2715 3712 6721 3746 5242 6283 4355 * 4414 5650 4383 5345 4926 6541 5342 22 0 * * * * * * 6650 0 0 R 23 4231 6756 4907 6721 * * * * 1525 3495 4238 3831 * 4430 2257 5545 * 5533 5648 5908 23 0 * * * * * * 6650 0 0 L 24 2524 6509 6464 4762 3997 5340 * 3709 * 1715 6354 * * 4854 6592 4271 3873 3279 * 5770 24 0 * * * * * * 6650 0 0 P 25 3896 * 1775 1824 6684 4200 6887 * 4066 * 5931 3217 5016 6561 6679 4588 6768 * * * 25 0 * * * * * * 6756 0 0 F 26 2689 * 2979 2592 6558 * 5559 6586 2865 * * 5077 4366 5531 3426 3952 3568 5011 * * 26 0 * * * * * * 6756 0 0 V 27 3682 * * * * * * 2651 * 2960 4985 * * * * * 3891 901 * * 27 0 * * * * * * 6798 0 0 I 28 6215 5206 * 3772 * 6931 5805 2828 2412 3931 4022 5327 * 5573 2846 4688 5315 2686 * * 28 21 6146 * 0 * * * 6798 1000 0 D 29 3723 * 2159 2200 * 6216 4864 5048 3303 5249 * 4525 * 2900 4543 4611 * 5976 * * 29 0 * * * * * * 6798 0 0 T 30 622 7063 * 4774 * 5905 5962 3963 4989 6146 * 6503 * * 4667 5860 4828 4792 * 5334 30 0 * * * * * * 6798 0 0 L 31 2718 * * * 4927 * * 4003 * 650 4499 * * * * 5175 6863 4848 * * 31 0 * * * * * * 6798 0 0 S 32 3288 6503 5674 4358 * 4690 4594 4458 2847 3304 6992 5150 * 4619 1948 4643 5001 5029 * 6087 32 16 6477 * 2322 322 * * 6798 1000 0 K 33 2913 * 3402 1919 * 5126 6254 6023 2721 5381 * 6758 * 3901 4242 3662 3895 * * * 33 13 6772 * 0 * * * 6887 1000 0 Y 34 1920 5764 * 3779 5266 6221 6416 3050 4668 3308 4112 4586 * 6466 6555 4472 5023 3226 * 5151 34 155 3415 6900 912 1094 * * 6947 3478 0 G 35 * * 4724 5682 * 300 4996 * 6129 * * 6042 6190 6571 * 4453 * * * * 35 30 5596 * 2615 257 0 * 6952 1723 1000 I 36 1967 4230 * * 2933 * 5286 2662 * 5211 * * * * * 4576 * 1905 * 4637 36 35 5392 * 2693 242 * * 6947 1605 0 R 37 4489 * 4354 3408 5395 3236 3930 6542 3576 6480 * 5519 2856 5681 3213 3590 3115 * * 5302 37 0 * * * * * * 6947 0 0 G 38 4667 * 5522 * 6845 605 6097 * * * * 4948 * * 5564 2687 * 5192 5497 * 38 14 6668 * 0 * * * 6947 1000 0 L 39 2542 6814 * * 3142 3459 * 2867 * 2480 2459 5981 6164 6049 * * * 4035 6494 * 39 0 * * * * * * 6947 0 0 T 40 4290 * * * 6049 * * 4529 * * 6670 5915 * * * 3173 426 6841 * * 40 0 * * * * * * 6947 0 0 N 41 5165 6926 * * 4616 * * 1799 6047 2831 6691 5172 * * * * 5150 1355 * 5397 41 0 * * * * * * 6947 0 0 T 42 5084 7035 5384 * 3885 * * 2726 * 3039 4664 * * * 4992 2123 2989 3889 6049 3481 42 28 5708 * 0 * * * 6947 1748 0 P 43 6133 * 2854 2784 6049 * 3849 * 3572 5089 6801 3030 3732 3644 3483 4386 5520 * * 4094 43 15 6612 * 3459 138 * * 6947 1000 0 V 44 2132 5299 * * * 2383 * 3554 * 6431 * * * * * 4563 6484 1306 * * 44 26 5817 * 3037 187 * * 6947 1726 0 K 45 6527 * * 3602 5890 * 4136 5713 2286 4032 4970 5060 * 3404 1947 4613 4042 6165 6876 6955 45 59 4649 * 3068 183 * * 6947 2005 0 G 46 5766 * * 5024 6843 213 * * * * * * 6498 * 6645 5307 * * * 4925 46 66 4474 * 3511 132 * * 6947 3076 0 V 47 4567 3967 * 5089 3445 * 6187 4129 * 6280 4441 * * 5853 2099 3515 2669 4316 * 3360 47 55 4733 * 2527 275 * * 6947 2178 0 G 48 3600 * * * * 390 * * * * * 6791 6776 5284 5124 4046 6696 6444 * * 48 110 3770 * 3528 131 * * 6947 3385 0 E 49 3389 5670 6480 4453 6600 5889 4626 3577 2528 3947 6136 5877 * 3542 2867 3465 5750 3738 * * 49 44 5070 * 3849 104 * * 6947 2301 0 F 50 5800 6678 * 2663 5581 3819 3304 * 4405 5050 6931 4258 5683 2333 3477 4259 4471 * * 3674 50 111 3761 * 3336 150 * * 6947 3385 0 G 51 4391 * 3642 2475 6670 3651 4590 * 3252 5329 * 4416 5394 4809 2956 4166 6751 5463 * 3201 51 110 3766 * 3253 160 * * 6947 3719 0 P 52 3367 * 4142 5193 5576 2231 5670 3579 4124 4383 6291 4649 4006 4063 3219 5339 4891 5324 * 6497 52 109 3780 * 3400 144 * * 6947 3346 0 S 53 3333 * 3919 4432 5106 4617 4262 4319 3283 3226 4937 * 5655 5055 4123 3843 3388 3300 * * 53 149 3346 * 3662 119 * * 6947 3585 0 N 54 4664 * 2772 3254 6933 3992 5650 6473 3278 5808 * 3067 5120 4729 4138 5130 3076 4706 6532 4403 54 90 4055 * 2972 197 * * 6947 3528 0 L 55 5128 6229 5242 5655 2127 * 6720 3680 6431 1549 5703 * * 6484 5091 4941 5172 3937 * 4137 55 82 4185 * 2649 251 * * 6947 3059 0 V 56 4477 * * 6805 3036 5429 3858 3205 5034 2105 4480 5786 6687 6613 5471 3929 4232 3477 * 4428 56 348 2223 * 2628 255 * * 6947 4261 0 D 57 4913 * 2925 1744 * 5507 6969 * 4311 * * 4347 2095 4430 4149 4672 5492 6816 * * 57 139 3448 * 2569 266 * * 6947 3889 0 K 58 6498 * 4764 5559 * * 3357 * 821 5259 5582 * 6098 5707 2579 5702 * * * * 58 78 4254 * 2472 287 * * 6947 2794 0 E 59 3691 * 4245 2277 5670 * * 4013 6799 4209 * 6670 * * 3941 5096 3811 1678 * 5018 59 84 4137 * 1954 431 * * 6947 2878 0 K 60 5014 * * 6233 5220 * * 2686 1860 4105 3970 5530 * 4264 2667 * 6767 2882 * * 60 24 5899 * 2547 271 * * 6947 1636 0 L 61 * * * * 4603 * * 1505 * 1783 6056 * * * * 6651 * 1782 * * 61 0 * * * * * * 6947 0 0 D 62 6229 6696 3501 1386 3747 * * 4978 6165 2427 4589 5797 * 5241 * 4646 4134 5865 * * 62 0 * * * * * * 6947 0 0 I 63 5326 4889 * * 6291 6229 * 1681 * 2841 3158 4943 * * * 5847 3229 2436 6600 * 63 17 6431 * 0 * * * 6947 1000 0 V 64 4359 * * * 3494 5118 * 2924 6543 2508 6720 * * * * * 6670 1141 6233 5092 64 13 * 6805 * * * * 6947 0 0 V 65 2784 3079 * * * * * 3114 * 4035 6637 * * * * * 3750 1072 * * 65 14 * 6673 * * * 0 6941 0 1000 S 66 3947 * 3247 2397 * 4948 4917 * 3459 * 6968 4126 2706 4925 4413 3289 3593 * * * 66 15 6596 * 2000 415 0 * 6880 1000 1124 R 67 3619 * 1294 2529 * 6497 6504 * 3400 * * 5124 5031 5051 6635 3481 4977 * * * 67 0 * * * * * * 6947 0 0 A 68 3299 * 3178 1506 * 5685 5667 4964 4189 * * 3982 5205 4738 4489 3355 4967 7038 * * 68 13 6767 * 0 * * * 6947 1000 0 Q 69 3449 6138 2820 3828 5570 * 3875 4146 3183 3546 3738 4681 5660 3583 4485 5997 5916 4739 * 6739 69 0 * * * * * * 6947 0 0 V 70 1917 * * 4530 7048 * * 5789 4455 3030 5908 * * 5204 * 5130 3896 1479 * * 70 0 * * * * * * 6947 0 0 D 71 4155 * 1843 1625 * 4845 * * 5667 * 6279 5005 3558 3979 3956 5074 * * * * 71 0 * * * * * * 6944 0 0 A 72 2609 * 3563 2426 7265 5169 6164 * 2431 4655 * 4038 4018 4145 4973 6529 4269 5760 * * 72 0 * * * * * * 6944 0 0 V 73 3170 * * * * * * 1650 * 2511 * * * * * * 4343 1532 * * 73 0 * * * * * * 6944 0 0 V 74 4249 * * 5723 3377 * 6439 1987 * 2808 3771 * * * 5892 5111 5172 1892 * 6735 74 0 * * * * * * 6944 0 0 R 75 3322 * 2824 2114 6289 4384 5114 * 2971 5034 * 3417 * 4903 4070 4298 4869 * * 6867 75 15 * 6567 * * * * 6944 0 0 L 76 1583 5156 * 4927 5404 * 5240 2853 4796 4110 5972 * * * 5390 3016 2928 5158 * * 76 0 * * * * * 0 6958 0 1000 V 77 3956 * * * * * * 731 * 2581 * * * * * * * 2592 * * 77 0 * * * * 0 * 6958 0 1000 A 78 3900 5787 5278 6892 * 5029 4841 3690 3090 3402 3401 5628 * 6890 3391 3382 3575 3184 * 5863 78 0 * * * * * * 6957 0 0 A 79 4439 * 3159 2100 6506 4717 4889 * 3046 4655 * 4567 * 3875 3157 4030 3616 * * * 79 26 5817 * 1000 1000 * * 6957 1124 0 S 80 1823 7006 7046 3841 * 4748 4734 4661 3490 * * 3900 * 6122 5506 3697 3267 2947 * 6074 80 14 6725 * 0 * * * 6957 1000 0 A 81 1405 4695 6538 * 6392 2434 * 5650 * 2595 4964 4094 * * * 4478 5707 4797 * * 81 16 6523 * 1000 1000 * * 6925 1000 0 Y 82 4649 5596 3717 3839 5208 3062 2851 * 3003 * * 3815 * 4143 2974 4267 6765 6538 5698 4743 82 14 6671 * 1585 585 * * 6925 1000 0 T 83 5410 * 6538 6471 3961 * 5691 4064 6725 1994 6392 * 4999 * * 5145 1098 6376 * * 83 31 6400 6711 1000 1000 * * 6925 1000 0 G 84 4196 * 3060 4236 * 969 * 6562 4640 * * 3786 * 6464 5533 4260 5621 5425 * 6690 84 15 6593 * 0 * * 0 6918 1000 1000 E 85 4393 6746 * 2533 * 6273 4355 5720 2587 4928 6623 3769 6528 3139 3491 3247 4130 5628 * 6523 85 43 5769 6517 1044 958 * 0 6918 1748 1000 I 86 3867 * 5320 3963 5728 5611 6688 3435 4527 * 5358 5265 1611 6743 4617 4044 3770 3384 * * 86 0 * * * * * 0 6905 0 1706 G 87 4997 6011 4263 4450 * 379 5941 6509 * * * 4975 * * 6056 6362 * * * * 87 0 * * * * 949 1053 6905 0 1706 D 88 4305 * 954 5607 * 4605 4287 6370 3626 * 6636 4390 * 4598 4649 3980 5321 * * * 88 0 * * * * 0 * 6918 0 1000 G 89 5659 * * * * 79 * * * * * * * * * 5691 6112 * * * 89 18 * 6370 * * * * 6925 0 0 K 90 5684 * * 6086 3937 * * 1806 1400 3745 * * * * 4398 * 6521 4236 4331 * 90 0 * * * * * 0 6872 0 1000 I 91 3126 5588 * * * 5807 * 933 * 3982 5683 * * * * 5369 6558 2284 * * 91 0 * * * * * 0 6872 0 1000 F 92 4036 * * * 746 6594 5953 6652 * 4001 6150 * * * * 6513 6841 * 3454 3070 92 0 * * * * * 0 6872 0 1000 V 93 4642 * * 6148 * * * 2415 * 6409 5108 * * 6652 * 3618 3923 836 * * 93 0 * * * * * 0 6872 0 1000 H 94 * 5362 * * 5667 * 6558 2827 6728 2273 4348 5689 * 5126 6596 2171 3472 3107 * 4249 94 0 * * * * * 0 6872 0 1000 P 95 * * 2155 3239 * * * * 6672 * * 4724 946 6639 5501 5858 4225 * * * 95 0 * * * * 0 * 6872 0 1000 V 96 * * * * * * * 2219 * 2548 4133 * 5666 * * * 6414 928 * * 96 0 * * * * * * 6894 0 0 A 97 4558 6829 3079 1606 * 6227 6556 4302 4248 4373 * 5041 * 5040 5298 2814 3730 5470 * * 97 0 * * * * * * 6866 0 0 E 98 5084 * 2765 2321 * 4272 * * 3558 * * 4171 * 2622 3282 3175 4183 * * * 98 0 * * * * * * 6820 0 0 V 99 1298 5548 * * 4130 6878 * 3296 * 5641 * * * * 5885 4248 4166 1948 * * 99 19 6252 * 0 * * * 6771 1000 0 V 100 3845 * * * 5073 6136 6249 1961 * 3820 4608 * * * * * 4077 1523 * 3362 100 0 * * * * * * 6319 0 0 R 101 * * 3754 5916 5296 2502 5205 * 4726 * * 4583 4337 4174 1146 * 5114 6047 * * 101 0 * * * * * * 6188 0 0 I 102 * * * * * * * 635 * 3188 4638 * * * * * * 2278 * * 102 45 5032 * 0 * * * 6155 1000 0 R 103 4926 4988 * 4366 * 4774 5742 * 3661 * * * * 4527 656 3738 * * * * 103 0 * * * * * * 5927 0 0 T 104 * * 3721 * * 5115 * * * * 4653 5792 * * * 2999 489 * * * 104 0 * * * * * * 5575 0 0 A 105 5626 * 5571 * * 671 * * 2797 4569 * 4714 * 4336 4760 * 5647 * * * 105 0 * * * * * * 5459 0 0 E 106 4099 * 4182 493 * * * 5425 4610 * * * * 4538 * * 4369 5610 * * 106 0 * * * * * * 5412 0 0 T 107 5497 5367 5045 2399 5695 * * * 4058 * 5954 3953 * 5429 2096 2658 2661 * * * 107 0 * * * * * * 5200 0 0 G 108 * * 3171 * * 252 * * * * * 5594 * * * 5143 * * * * 108 0 * * * * * * 4931 0 0 L 109 * * * * * * * 1247 * 1024 * * * * * * * 3524 * * 109 0 * * 0 * * * 3567 0 0 //