HHsearch 1.5 NAME c4uoiB_ FAM FILE c4uoiB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4uoiB_.a3m DATE Sat Aug 23 08:17:00 2014 LENG 72 match states, 72 columns in multiple alignment FILT 10 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.8 EVD 0.4461 1.3234 SEQ >ss_dssp CEEEETTEEEECCCSCGGGHHHHHHHHHHHHCSSCCCEEEETTEEEEEEECCCCCCEEEEEEECCCCCCCCC >sa_dssp EEDEEEEDEDEDEEECEEDCEEEDBDDBDEECEEECEDDEEEECCCBDAEDEEEEEDBDCEEEEEEEEEEEE >ss_pred CEEECCCCEEEEEECCCCCEEEEEECCCEEECCCCEEEEECCCCEEEEEECCCCHHHHHHEEEECEEEEEEC >ss_conf 903401223899734888648997538257378732238628821668853841011110001000013309 >Consensus xevRNxsgxYhvTndcpNsSivyEaxdxilHxPGCVPcvrxxnxsrcWvxvtPlrxhvdxlvxxaxsalYvg >c4uoiB_ YQVRNSSGLYHVTNDCPNSSVVYEAADAILHTPGCVPCVREGQASRCWVAVTPLRRHIDLLVGSATENLYFQ >UniRef50_A6YCA4(193-225:683) Genome polyprotein (Fragment) n=77 Tax=Hepatitis C virus RepID=A6YCA4_9HEPC E=0.0002 s/c=1.42 id=67% cov=42% -EXRNVSGLYVLTNDCPNSSVVYEADDVMM------------------------------------------ >UniRef50_D1G2H0(1-45:110) Genome polyprotein (Fragment) n=1 Tax=Hepatitis C virus RepID=D1G2H0_9HEPC E=7e-13 s/c=1.67 id=59% cov=64% -------GIYHVTITAP-LSIVFEAEDVIMHTPGCVPWVREDNHSRWWGGVPP------------------- >UniRef50_P87823(9-57:99) Genome polyprotein (Fragment) n=20 Tax=Hepatitis C virus RepID=P87823_9HEPC E=7e-08 s/c=1.19 id=73% cov=51% -----------------------------MHTPGCVPCVXEDNSSRCWVALTPtlaarnssiptttIRRHVDLLVGTA------- >UniRef50_C0SUM3(192-217:462) Genome polyprotein (Fragment) n=17 Tax=Hepatitis C virus subtype 1b RepID=C0SUM3_9HEPC E=0.0003 s/c=1.79 id=70% cov=32% HEVRNVSGVYHVTNDCSNSSFV-------------------------------------------------- >UniRef50_Q7LZY6(92-377:874) Genome polyprotein (Fragments) n=1953 Tax=Hepatitis C virus RepID=Q7LZY6_9HEPC E=1e-109 s/c=0.27 id=48% cov=101% VEVRNISSSYYATNDCSNNSITWQLTNAVLHLPGCVPCENDNGTLRCWIQVTPnvavkhrgalthnLRTHVDMIVMAATvcSALYVG >UniRef50_A6YCA2(92-285:645) Genome polyprotein (Fragment) n=20 Tax=Hepatitis C virus RepID=A6YCA2_9HEPC E=6e-87 s/c=0.66 id=71% cov=101% HEVRNVSGAYHVTNDCSNSSIVYEAADMIMHAPGCVPCVREGNSSRCWVALTPtlaarnasvptttIRRHVDLLVGAATfcSATYVG >UniRef50_A4K460(92-378:2529) Genome polyprotein (Fragment) n=1031 Tax=Hepatitis C virus RepID=A4K460_9HEPC E=1e-139 s/c=0.43 id=84% cov=101% XQVRNTTGLYHVTNDCPNSSIVYEAADAILHAPGCVPCVREGNASRCWVAVTPtvatrdgxlpttqLRRHIDLLVGSAtlCSALYVG >UniRef50_Q68749(92-377:3037) RNA-directed RNA polymerase n=63669 Tax=Viruses RepID=POLG_HCVBB E=1e-132 s/c=0.41 id=58% cov=101% VEVRNTSSSYMATNDCSNSSIVWQLEGAVLHTPGCVPCEKTGNKSRCWVPVTPniainqpgaltkgLRAHIDVIVMSAtlCSALYVG >UniRef50_C4B762(1-103:103) Genome polyprotein (Fragment) n=1 Tax=Hepatitis C virus RepID=C4B762_9HEPC E=5e-41 s/c=0.90 id=56% cov=88% VNYRNASDVYHITNDCPNASIIYESDNHILHLPGCVPCVRIGNRSQCWVALTP----------TVCSALYIG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Y 1 * * * * * * 1823 * * * * * * * * * * 894 * 2482 1 0 * * * * * * 1702 0 0 Q 2 * * * 772 * * * * * * * 2449 * 2114 * * * * * * 2 0 * * * * * * 1711 0 0 V 3 * * * * * * * * * * * * * * * * * 311 * 2365 3 0 * * * * * * 1714 0 0 R 4 * * * * * * * * * * * * * * 0 * * * * * 4 0 * * * * * * 1711 0 0 N 5 * * * * * * * * * * * 0 * * * * * * * * 5 0 * * * * * * 1711 0 0 S 6 2449 * * * * * * 2773 * * * * * * * 3183 2083 1624 * * 6 0 * * * * * * 1711 0 0 S 7 * * * * * * * * * * * * * * * 186 3047 * * * 7 0 * * * * * * 1711 0 0 G 8 * * 2830 * * 693 * * * * * * * * * 2055 * * * * 8 0 * * * * * * 1886 0 0 L 9 3570 * * * * * * 2510 * 1927 * * * * * 2055 * 2079 * * 9 0 * * * * * * 1886 0 0 Y 10 * * * * * * * * * * * * * * * * * * * 0 10 0 * * * * * * 1886 0 0 H 11 * * * * * * 619 * * * 3268 * * * * * * 3207 * 2870 11 0 * * * * * * 1886 0 0 V 12 2055 * * * * * * 2830 * 3207 * * * * * * * 970 * * 12 0 * * * * * * 1886 0 0 T 13 * * * * * * * * * * * * * * * * 0 * * * 13 0 * * * * * * 1886 0 0 N 14 * * * * * * * 2510 * * * 279 * * * * * * * * 14 0 * * * * * * 1886 0 0 D 15 * * 279 * * * * * * * * * * * * * 2510 * * * 15 0 * * * * * * 1886 0 0 C 16 2510 279 * * * * * * * * * * * * * * * * * * 16 0 * * * * * * 1886 0 0 P 17 * * * * * * * * * * * * 788 * * 1249 * * * * 17 279 * 2510 * * * * 1886 0 0 N 18 * * * * * * * * * * * 0 * * * * * * * * 18 0 * * * * 0 * 1711 0 1000 S 19 2830 * * * * * * * * 2510 * 2870 * * * 870 * * * * 19 0 * * * * * * 1886 0 0 S 20 * * * * * * * * * * * * * * * 0 * * * * 20 0 * * * * * * 1886 0 0 V 21 * * * * 3380 * * 485 * * * * * * * * * 2401 * * 21 0 * * * * * * 1886 0 0 V 22 * * * * * * * 2830 * * * * * * * * 2870 469 * * 22 0 * * * * * * 1886 0 0 Y 23 * * * * 2607 * * * * * * * * * * * * * 1793 870 23 0 * * * * * * 2110 0 0 E 24 * * * 491 * * * * * * * * * 1793 * * * * * * 24 0 * * * * * * 2110 0 0 A 25 841 * * * * * * * * 1793 * * * * * 2706 * * * * 25 0 * * * * * * 2110 0 0 A 26 1889 * 1850 1742 * * * * * * * * * * * * 2701 * * * 26 0 * * * * * * 2110 0 0 D 27 * * 841 * * 2891 * * * * * 1704 * * * * * * * * 27 0 * * * * * * 2110 0 0 A 28 1127 * * * * * 2706 * * * 3311 * * * * * * 1794 * * 28 0 * * * * * * 2110 0 0 I 29 * * * * * * * 768 * * 3010 * * * * * * 1793 * * 29 0 * * * * * * 2110 0 0 L 30 * * * * * * * * * 802 1229 * * * * * * * * * 30 0 * * * * * * 1979 0 0 H 31 * * * * * * 0 * * * * * * * * * * * * * 31 0 * * * * * * 1710 0 0 T 32 2382 * * * * * * * * 1694 * * * * * * 1002 * * * 32 0 * * * * * * 1710 0 0 P 33 * * * * * * * * * * * * 0 * * * * * * * 33 0 * * * * * * 1710 0 0 G 34 * * * * * 0 * * * * * * * * * * * * * * 34 0 * * * * * * 1710 0 0 C 35 * 0 * * * * * * * * * * * * * * * * * * 35 0 * * * * * * 1710 0 0 V 36 * * * * * * * * * * * * * * * * * 0 * * 36 0 * * * * * * 1710 0 0 P 37 * * * * * * * * * * * * 0 * * * * * * * 37 0 * * * * * * 1710 0 0 C 38 * 275 * * * * * * * * * * * * * * * * 2527 * 38 0 * * * * * * 1710 0 0 V 39 * * * 1684 * * * * * * * * * * * * * 538 * * 39 0 * * * * * * 1710 0 0 R 40 * * * * * * * * 2787 * * 2462 * * 570 * * * * * 40 0 * * * * * * 1870 0 0 E 41 * * 2447 828 * * * 2994 * * * * * * * * 2968 * * * 41 0 * * * * * * 1710 0 0 G 42 * * 1888 * * 872 * * * * * 2447 * * * * * * * * 42 0 * * * * * * 1710 0 0 Q 43 * * * * * 2447 * * * * * 483 * 3304 * * * * * * 43 0 * * * * * * 1710 0 0 A 44 2363 * * * * * 2527 * 2968 * * * * * 2994 2356 2447 * * * 44 0 * * * * * * 1710 0 0 S 45 * * * * * * * * * 2447 * * * * * 292 * * * * 45 0 * * * * * * 1710 0 0 R 46 * * * * * * * * * * * * * 2994 194 * * * * * 46 0 * * * * * * 1710 0 0 C 47 * 275 * * * * * * * * * * * * * * * * 2527 * 47 0 * * * * * * 1710 0 0 W 48 * * * * * * * * * * * * * * * * * * 0 * 48 0 * * * * * * 1710 0 0 V 49 * * * * * 2527 * 2447 * * * * * * * * * 637 * * 49 0 * * * * * * 1710 0 0 A 50 957 * * * * 2527 * * * * * * 2968 2447 * * * * * * 50 0 * * * * * * 1710 0 0 V 51 * * * * * * * * * 1640 * * * * * * * 558 * * 51 0 * * * * * * 1710 0 0 T 52 * * * * * * * * * * * * 2527 * * * 275 * * * 52 0 * * * * * * 1710 0 0 P 53 * * * * * * * * * * * * 0 * * * * * * * 53 3029 463 2719 3700 115 * * 1710 1561 0 L 54 * * * * * * * 1705 * 528 * * * * * * * * * * 54 0 * * * * * 0 1550 0 1000 R 55 * * * * * * * * * * * * * * 0 * * * * * 55 0 * * * * * 0 1550 0 1000 R 56 2441 * * * * * * * * * * * * * 767 * 2133 * * * 56 0 * * * * * 0 1550 0 1000 H 57 * * * * * * 0 * * * * * * * * * * * * * 57 0 * * * * * 0 1550 0 1000 I 58 * * * * * * * 1104 * * * * * * * * * 903 * * 58 0 * * * * * 0 1550 0 1000 D 59 * * 0 * * * * * * * * * * * * * * * * * 59 0 * * * * * 0 1550 0 1000 L 60 * * * * * * * * * 767 2133 * * * * * * 2441 * * 60 0 * * * * * 0 1550 0 1000 L 61 * * * * * * * 1279 * 767 * * * * * * * * * * 61 0 * * * * * 0 1550 0 1000 V 62 * * * * * * * * * * * * * * * * * 0 * * 62 0 * * * * * 0 1550 0 1000 G 63 * * * * * 767 * * * * 1279 * * * * * * * * * 63 0 * * * * 0 * 1550 0 1000 S 64 1566 * * * * * * * * * * * * * * 1278 2000 * * * 64 0 * * * * * * 1595 0 0 A 65 178 * * * * * * * * * * * * * * * * 3109 * * 65 579 1597 * 1000 1000 * * 1595 1244 0 T 66 * 1080 * * * * * * * * * * * * * * 924 * * * 66 645 1472 * 1000 1000 * * 1682 1363 0 E 67 * * * 2587 * * * * * * * * * * * 263 * * * * 67 0 * * * * * * 1682 0 0 N 68 263 * * * * * * * * * * 2587 * * * * * * * * 68 0 * * * * * * 1682 0 0 L 69 * * * * * * * * * 257 * * * * * * 2616 * * * 69 0 * * * * * * 1682 0 0 Y 70 * * * * * * * * * * * * * * * * * * * 0 70 0 * * * * * * 1682 0 0 F 71 * * * * 2587 * * 2584 * * * * * * * * * 585 * * 71 0 * * * * * * 1682 0 0 Q 72 * * * * * 263 * * * * * * * 2587 * * * * * * 72 0 * * 0 * * * 1682 0 0 //