HHsearch 1.5 NAME c4umoB_ FAM FILE c4umoB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4umoB_.a3m DATE Sat Nov 8 08:16:03 2014 LENG 96 match states, 96 columns in multiple alignment FILT 28 out of 32 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.3 EVD 0.4388 0.1638 SEQ >ss_dssp CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTSSSSGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC >sa_dssp EEDDDDEEEEEDEEEEEEDCEEECCCCEEEEEDDEEDDDEEEEDEEEEBDEDEEDEBDDDEEEECEDDCEEDDECEEDEEEEEDEEDEDDEEEEDE >ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC >ss_conf 986647786100643045789999875415542101899999999754226888810000000001463553057899999999989999961087 >Consensus xxxxxxxxxxxxxxxxxALkVqqqxrqKhfxrxxxpAAxLIQxxWRxYAxxxxxxaTWxxxlrxxxlxexhkxaIRviRRxkyfVArRkFqxaxkP >c4umoB_ HHHHHHGSDYDDIPTTSALKVQQKQRQKHFNRQIPAAASLIQTAWRCYAAENPDSSTWKIYIEFSQLREHHRATIKVIRRMQYFVAKKKFQQARKP >UniRef50_Q9XWG9(400-490:621) Protein Y54G9A.3a, confirmed by transcript evidence n=4 Tax=Caenorhabditis RepID=Q9XWG9_CAEEL E=5e-05 s/c=0.54 id=47% cov=51% -----------------------------------------------YETEEPTTPT-RPQGHIShvcELTDAHRNAIRAIRRVKYFVARRRFQQARKP >UniRef50_B0R0K2(320-390:655) Potassium voltage-gated channel, KQT-like subfamily, member 1 n=3 Tax=Coelomata RepID=B0R0K2_DANRE E=1e-14 s/c=1.14 id=53% cov=75% -----------------ALKVQQKQRQKHFNRQIPAAASLIQASWRCFALLNPDSATYKLFVKRNLSSSGSSPKLKVKMRRKMKISDR-------- >UniRef50_C0JSV8(508-570:992) Voltage gated potassium channel subunit isoform 1 n=2 Tax=Ciona intestinalis RepID=C0JSV8_CIOIN E=0.0001 s/c=0.76 id=44% cov=33% -----------------------------------------------------------------ELTEQHKVAIRAIRMMKFFVARRKFKEALRP >UniRef50_B4DS33(316-398:787) cDNA FLJ61366, highly similar to Potassium voltage-gated channel subfamily KQT member 5 n=3 Tax=Homo sapiens RepID=B4DS33_HUMAN E=2e-25 s/c=1.40 id=42% cov=80% -----------------ALKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVsiATWKPHLKAlhtcsPTKKEQGEASSRI---MKFHVAKRKFKET LRP >UniRef50_A8PHW0(127-195:702) Voltage-gated potassium channel, KCNQ (Kv7-like) alpha-subunit. C. elegans kqt-1 ortholog (Fragment) n=1 Tax=Brugia malayi RepID=A8PHW0_BRUMA E=1e-17 s/c=1.32 id=45% cov=67% -----------------ALKVQQHQRQKHLIRRRVPAARLIQCMWRHYAAtpESCSMATWRVYLATINSPNHaviGYGNDRIERR--------------- - >UniRef50_Q8IGU8(330-490:840) RE26469p (Fragment) n=5 Tax=Drosophila melanogaster RepID=Q8IGU8_DROME E=8e-17 s/c=0.55 id=51% cov=83% -----------------ALKVQQQQRQKHMIRRRQPAATLIQAVWRCYAADEHsvSVATWNIHrvalpsppasrasssfkhntsfvARLPTIRRHksqti qtpgggdgggvskppgssrastrytrtirdinasvenldeedeprctqltnrHKTAIRFIRKLKYFVARRKFKEALKP >UniRef50_UPI0001926EF2(260-305:490) PREDICTED: similar to potassium voltage-gated channel KQT-like protein 4 n=1 Tax=Hydra magnipapillata RepID=UPI0001926EF2 E=1e-10 s/c=1.47 id=39% cov=48% -----------------ALQVSKQKKEKGSIKIKNPAALLIQCAWRGYAVRNPNlTATWSYFL---------------------------------- >UniRef50_Q9Z351(317-370:759) Potassium voltage-gated channel subfamily KQT member 2 n=8 Tax=Eutheria RepID=KCNQ2_MOUSE E=4e-13 s/c=1.41 id=51% cov=47% -----------------ALKVQEQHRPKHFEKRRNPAAGLIQSAWRFYATNLSRTdlhSTWQYY----------------------------------- >UniRef50_C0JSV5(288-427:520) Voltage gated potassium channel subunit n=1 Tax=Ciona intestinalis RepID=C0JSV5_CIOIN E=3e-09 s/c=0.45 id=50% cov=71% -----------------------------FNRQIPAAAALIQATWRCYATSvgTNCSATWrlfkiagnhrnsdvtncdevfieetqprpnttkksrcals RLHLDIPIFRtrpplskedksqsipfeigidvdenpadgmpESYKNVVRATRRLIYFLAKKRFQRSRKP # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * H 1 * * * * * * 0 * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 H 2 * * * * * * 0 * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 H 3 * * * * * * 0 * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 H 4 * * * * * * 0 * * * * * * * * * * * * * 4 0 * * * * * * 1000 0 0 H 5 * * * * * * 0 * * * * * * * * * * * * * 5 0 * * * * * * 1000 0 0 H 6 * * * * * * 0 * * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 G 7 * * * * * 0 * * * * * * * * * * * * * * 7 0 * * * * * * 1000 0 0 S 8 * * * * * * * * * * * * * * * 0 * * * * 8 0 * * * * * * 1000 0 0 D 9 * * 0 * * * * * * * * * * * * * * * * * 9 0 * * * * * * 1000 0 0 Y 10 * * * * * * * * * * * * * * * * * * * 0 10 0 * * * * * * 1000 0 0 D 11 * * 0 * * * * * * * * * * * * * * * * * 11 0 * * * * * * 1000 0 0 D 12 * * 0 * * * * * * * * * * * * * * * * * 12 0 * * * * * * 1000 0 0 I 13 * * * * * * * 0 * * * * * * * * * * * * 13 0 * * * * * * 1000 0 0 P 14 * * * * * * * * * * * * 0 * * * * * * * 14 0 * * * * * * 1000 0 0 T 15 * * * * * * * * * * * * * * * * 0 * * * 15 0 * * * * * * 1000 0 0 T 16 * * * * * * * * * * * * * * * * 0 * * * 16 0 * * * * * * 1000 0 0 S 17 * * * * * * * * * * * * * * * 0 * * * * 17 0 * * * * * * 1000 0 0 A 18 0 * * * * * * * * * * * * * * * * * * * 18 0 * * * * * * 2206 0 0 L 19 * * * * * * * * * 0 * * * * * * * * * * 19 0 * * * * * * 2206 0 0 K 20 * * * * * * * * 276 * * * * 2522 * * * * * * 20 0 * * * * * * 2206 0 0 V 21 * * * * * * * * * * * * * * * * * 0 * * 21 0 * * * * * * 2206 0 0 Q 22 * * * * * * * * * * * * * 276 * 2522 * * * * 22 0 * * * * * * 2206 0 0 Q 23 * * * 1620 * * * * 2522 * * * * 999 * * * * * * 23 0 * * * * * * 2206 0 0 K 24 * * * * * * 2918 * 1393 * * * * 1038 * * * * * * 24 0 * * * * * * 2206 0 0 Q 25 * * * * * * 1906 * 2522 * * 4093 * 999 * * * * * * 25 0 * * * * * * 2206 0 0 R 26 * * * * * * * * 2522 * * * * * 276 * * * * * 26 0 * * * * * * 2206 0 0 Q 27 * * * 2522 * * * * * * * * 4272 369 * * * * * * 27 0 * * * * * * 2206 0 0 K 28 * * * * * * * * 0 * * * * * * * * * * * 28 0 * * * * * * 2206 0 0 H 29 * * * * * 2522 276 * * * * * * * * * * * * * 29 0 * * * * * * 2206 0 0 F 30 * * * * 666 * * * * 2968 3812 * * * * 2551 * * * * 30 0 * * * * * * 2228 0 0 N 31 4141 * * 1960 * * * 1436 * * * 1659 * * * * * * * * 31 0 * * * * * * 2228 0 0 R 32 * * * * * * * * 1225 * * * * * 805 * * * * * 32 0 * * * * * * 2228 0 0 Q 33 * * * * * * * 3539 * * * * * 1659 964 * * 3563 * * 33 0 * * * * * * 2228 0 0 I 34 * * * * * * * 1659 2551 * * * * * 964 * * * * * 34 0 * * * * * * 2228 0 0 P 35 * * * * * * * * 4548 * 3279 1562 1659 3812 * * * 2968 * * 35 0 * * * * * * 2228 0 0 A 36 1659 * * * * * * * * * * * 549 * * * * * * * 36 0 * * * * * * 2228 0 0 A 37 0 * * * * * * * * * * * * * * * * * * * 37 0 * * * * * * 2228 0 0 A 38 0 * * * * * * * * * * * * * * * * * * * 38 0 * * * * * * 2228 0 0 S 39 4808 4284 * 4548 * 3637 * 3563 4428 3539 4754 3597 * * 4472 2605 2419 * * 4141 39 0 * * * * * * 2228 0 0 L 40 * * * * * * * * * 0 * * * * * * * * * * 40 0 * * * * * * 2228 0 0 I 41 * * * * * * * 84 * 4141 * * * * * * * * * * 41 0 * * * * * * 2228 0 0 Q 42 * * * * * * * * * * * * * 0 * * * * * * 42 131 4432 4627 1585 585 * * 2228 1000 0 T 43 1729 1050 * * * 4264 * * * * * * * * * 4280 3163 * * * 43 0 * * * * 0 * 2284 0 1000 A 44 1125 * * * * * * * * 2355 3297 * * * * 4044 4808 2757 * * 44 0 * * * * * * 2228 0 0 W 45 * * * * * * * * * * * * * * * * * * 0 * 45 0 * * * * * * 2228 0 0 R 46 4627 * * * * * * * * * * * * * 60 * * * * * 46 0 * * * * * * 2228 0 0 C 47 * 1183 * * 2924 3539 3450 * * 3526 * 3563 * * * 4784 * * * 4548 47 0 * * * * * * 2228 0 0 Y 48 * * * * 4060 * 3878 * * * * * * * * * * * * 198 48 0 * * * * * * 2242 0 0 A 49 236 * * 5451 * * * * * * * * * * * 2964 * * * * 49 0 * * * * * * 2242 0 0 A 50 1120 4611 * * * * * * * 3953 * * * * * * 1918 2557 * * 50 145 3389 * 1000 1000 * * 2307 1126 0 E 51 * * 1749 1829 * * * * 3602 3953 * 2743 * * 3514 4755 * * * * 51 54 4755 * 1000 1000 * * 2307 1000 0 N 52 4332 * * 2813 * * * * 2439 3255 * 1716 3608 * * 3389 4755 * * * 52 0 * * * * * * 2307 0 0 P 53 * 4380 * * * * 3158 * 3542 3602 * 2842 1997 * * 2094 4398 * * * 53 271 2544 * 1000 1000 * * 2307 1404 0 D 54 * 4755 2511 * * * 4332 * * * * 2557 * * 2743 1542 5135 4419 * * 54 205 2919 * 733 1328 * * 2307 1414 0 S 55 * * 4683 * * * * * * 4398 4380 * * * * 1222 2179 2209 * * 55 550 1658 * 1118 891 * * 2307 1848 0 S 56 397 4278 * * * * * * * * * * 5135 * * 2639 * * * * 56 55 4742 * 1000 1000 * * 2307 1000 0 T 57 * * * * * * * * * * * * * * * * 0 * * * 57 42 * 5135 * * * * 2307 0 0 W 58 * * * * * * * * * * * * * * * * * * 99 3918 58 57 4699 * 5322 37 0 * 2285 1000 1000 K 59 * * 4278 * * * * * 1186 * * 3042 * 3440 2661 3514 * * * 4332 59 0 * * * * * * 2307 0 0 I 60 4272 * * * 2628 * * 1841 * 2950 4519 * 2788 * * * * 4256 * 2865 60 0 * * * * * * 2603 0 0 Y 61 * * * * 2617 * 1428 * * * * * * 4734 * * * 7112 * 1249 61 73 4333 * 4524 64 * * 2603 1000 0 I 62 4112 * * * * 3187 * 3111 * 1470 4264 * * * 4569 * * 1935 * * 62 235 2733 * 6544 16 * * 3224 1324 0 E 63 3895 * 3592 2227 * * 2524 * 2258 * * * * * 1981 * * * * * 63 0 * * * * * * 4623 0 0 F 64 3366 3744 * * 3729 * * 2560 5734 3679 * * * * 2551 * 2894 2463 * * 64 147 3366 * 2322 322 * * 4100 1000 0 S 65 * 3991 * * * * * 2894 * * * 2551 1738 * * 2231 3068 * * * 65 97 3945 * 1585 585 * * 4100 1000 0 Q 66 * * * 2777 * * * 3086 * 2231 * 3624 * 1830 * * 2633 * * * 66 0 * * * * * * 3230 0 0 L 67 * * * * 3086 * * 4041 3316 1228 * * * * * 1766 * * * * 67 0 * * * * * * 3230 0 0 R 68 * * * * * * * * 3316 * * * 3624 * 1638 2231 1815 * * * 68 181 3086 * 4954 47 * * 3230 1000 0 E 69 * * 2698 1327 * * * * * * * 2526 * * 4041 2231 * * * * 69 0 * * * * * * 3230 0 0 H 70 2945 * * * * 2231 2220 * * * * * * 2283 4343 2413 * * * * 70 221 2818 * 4618 60 * * 3230 1378 0 H 71 * * * * * 2471 1026 * * * * * * * * 2234 * * * 3108 71 0 * * * * * * 3226 0 0 R 72 * * * 3328 * * * * 1516 * * * * * 1958 2234 * * * 3629 72 0 * * * * * * 3226 0 0 A 73 2059 * * * * 3045 * * * * * 1929 2234 * * * 3262 4074 * * 73 0 * * * * * * 3226 0 0 T 74 1254 * * * * * * * 2234 * * 3629 * * * 3328 3800 3108 * * 74 0 * * * * * * 3226 0 0 I 75 * * 3629 * * * * 1026 * 2234 * * * * * 3328 * 3108 * * 75 0 * * * * * * 3226 0 0 K 76 * * * * * * * * 1814 * * * * * 483 * * * * * 76 0 * * * * * * 3226 0 0 V 77 1635 * * * 2790 * * 2471 * * * * * * * * * 1502 * * 77 151 * 3328 * * * * 3226 0 0 I 78 * * * 3309 * * * 880 2125 * * * * * * * 2982 * * * 78 0 * * * * * 0 3049 0 1000 R 79 * * * * * * * * * * 2125 * * 3776 519 * * * * * 79 0 * * * * * 0 3049 0 1000 R 80 * * * * * * * * 2096 * 3805 * * * 526 * * * * * 80 0 * * * * 0 * 3049 0 1000 M 81 * * * * * * * 3344 * 2010 1398 * * * 2549 * * 3280 * * 81 0 * * * * * * 2609 0 0 Q 82 * * * * * * * 2919 464 * * * * 3764 * * * * * 3848 82 0 * * * * * * 2609 0 0 Y 83 * * * * 2439 * * * * * 2549 * * * * * * * * 633 83 0 * * * * * * 2609 0 0 F 84 * * * * 493 * 3077 * 2549 * * * * * * * * * * * 84 0 * * * * * * 2609 0 0 V 85 * * * * * * * 2549 * 2919 * * * * * * * 521 * * 85 0 * * * * * * 2609 0 0 A 86 270 * * * * * * * * * * * * * * 2549 * * * * 86 0 * * * * * * 2609 0 0 K 87 * * 2549 * * * * * 1625 * * * * * 986 * * * * * 87 0 * * * * * * 2609 0 0 K 88 * * * * * * * * 1861 * * * * * 464 * * * * * 88 0 * * * * * * 2609 0 0 K 89 * * * * * * * * 480 * * * * * 1821 * * * * * 89 0 * * * * * * 2173 0 0 F 90 * * * * 0 * * * * * * * * * * * * * * * 90 0 * * * * * * 2173 0 0 Q 91 * * * * * * * * 1239 * * * * 951 4085 * * * * * 91 0 * * * * * * 2173 0 0 Q 92 * * * 1051 * * * * * * * * * 1488 2635 * * * * * 92 0 * * * * * * 2173 0 0 A 93 530 * * * * * * * * * * * * * * 2635 2770 * * * 93 0 * * * * * * 2173 0 0 R 94 * * * * * * * * * 1051 * * * * 951 * * * * * 94 0 * * * * * * 2173 0 0 K 95 * * * * * * * * 480 * * * * * 1822 * * * * * 95 0 * * * * * * 2173 0 0 P 96 * * * * * * * * * * * * 0 * * * * * * * 96 0 * * 0 * * * 2173 0 0 //