HHsearch 1.5 NAME c4uhyC_ FAM FILE c4uhyC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4uhyC_.a3m DATE Sat May 9 08:19:25 2015 LENG 64 match states, 64 columns in multiple alignment FILT 11 out of 15 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.5 EVD 0.4889 2.9490 SEQ >ss_dssp CCTHHHHHHHHHHHTTCCCCSSCSHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHTTCC >sa_dssp ECCBEEBCDECEEDCEEEEEDEEBDCBEDBBECBEEBCEDAEECEDBDEBDEDBEEDCEECECE >ss_pred CCCCEEECHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC >ss_conf 9731230226765306898389999999999899852377258721455888899999733898 >Consensus xCrixxCnsxyvastxxxxxxxxCxaLRxyxxCtrrTarxCrGdLxYHSavxxixdLxxqxnCx >c4uhyC_ PCKILKCNSEFWSATSGSDTPEFCAALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMSQHNCS >UniRef50_Q8K2P0(194-262:376) Rgmb protein (Fragment) n=2 Tax=Eutheria RepID=Q8K2P0_MOUSE E=3e-13 s/c=1.11 id=63% cov=98% -CRIQKCTTDFValtahlnSAADGFDS-EFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCS >UniRef50_UPI0000E492DC(40-105:464) PREDICTED: similar to dragon-like muscle; DL-M; HFE2; Rgmc n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E492DC E=0.0005 s/c=0.69 id=41% cov=98% -CDILWCSYQYEADTDPLDPgpyPDFCRALQRYQRCVDRISPgSCRGDLHYHSTKTVIPDLQRNYEC- >UniRef50_UPI000186E67F(8-75:407) conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186E67F E=2e-05 s/c=0.74 id=32% cov=98% -CKADFCSSQYTESLDrekidrPEPTEASCKILRNFGKCLRMTAKECHGNIPYHSSIVMVKQLSKENNC- >UniRef50_UPI0001556480(106-132:261) PREDICTED: hypothetical protein, partial n=1 Tax=Ornithorhynchus anatinus RepID=UPI0001556480 E=2e-05 s/c=1.86 id=82% cov=44% -------------------------------------ARTCRGDLVYHAAVHCIEDLMIQHNCS >UniRef50_Q6ZVN8(33-220:426) Hemojuvelin n=23 Tax=Coelomata RepID=RGMC_HUMAN E=2e-64 s/c=0.64 id=74% cov=102% QCKILRCNAEYVSSTlslrgggssgalrggggggrgGGVGSGGLCRALRSYALCTRRTARTCRGDLAFHSAVHGIEDLMIQHNCS >UniRef50_Q7TQ33(55-219:436) RGM domain family member B n=8 Tax=Euteleostomi RepID=RGMB_MOUSE E=6e-47 s/c=0.43 id=57% cov=102% QCRIQKCTTDFVALTAHLNSAadgfdsEFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCS >UniRef50_C3YNU0(78-240:478) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YNU0_BRAFL E=5e-40 s/c=0.43 id=52% cov=102% DCRVTKCNSEFVASTSALNPAHqrdlvlYCRALRQATQCARRTARQCRGDLHYHSTIRGFADLMQSHNCT >UniRef50_Q7SYK8(2-203:415) Zgc:66326 n=10 Tax=Euteleostomi RepID=Q7SYK8_DANRE E=3e-74 s/c=0.50 id=57% cov=102% ACRIQRCNAEYVASFSPSGglqeevhpDVDYCIALRAYSLCTRRTARACRGDLVYHSAVFRIKELFAQHNCS >UniRef50_Q1JQE7(3-206:410) Hemochromatosis type 2 n=7 Tax=Clupeocephala RepID=Q1JQE7_DANRE E=1e-71 s/c=0.51 id=65% cov=102% QCRILRCNSDFVAATlesgvigGGNKEGvntGYCSALRSYALCTQRTARACRGDLAYHSAVQGIEDLLIQYRCP # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 2537 * 2278 * * * * * * * * * 2792 1067 * * * * * * 1 0 * * * * * * 1860 0 0 C 2 * 0 * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 2486 0 0 K 3 * * 2730 * * * * * 1570 * * * * * 964 * * * * * 3 0 * * * * * * 2486 0 0 I 4 2431 * * * * * * 512 * * * * * * * * * 3139 * * 4 0 * * * * * * 2486 0 0 L 5 * * 2431 * * * * * * 1158 * * * 1983 * * 3139 * * * 5 0 * * * * * * 2486 0 0 K 6 * * * * 2431 * * * 1535 * * * * * 1649 * * * 2730 * 6 0 * * * * * * 2486 0 0 C 7 * 0 * * * * * * * * * * * * * * * * * * 7 0 * * * * * * 2486 0 0 N 8 * * * * * * * * * * * 989 * * * 1573 2642 * * * 8 0 * * * * * * 2486 0 0 S 9 2533 * * * * * * * * * * * * * * 953 2642 * * 2730 9 0 * * * * * * 2486 0 0 E 10 * * 1707 1483 * * * * * * * * * 1573 * * * * * * 10 0 * * * * * * 2486 0 0 F 11 * * * * 1026 * * * * * * * * * * * * * * 975 11 0 * * * * * * 2486 0 0 W 12 * * * 2730 * * * * * * * * * * * * 2431 755 3809 * 12 117 3683 * 2807 222 * * 2486 1000 0 S 13 772 * * 2431 * * * * * * * * * * * 2126 * * * * 13 0 * * * * * * 2486 0 0 A 14 1760 * 2730 * * * * * * 3603 * * * * * 1084 * * * * 14 0 * * * * * * 2486 0 0 T 15 3683 * * * 3429 * * * * 2431 * * * * * * 635 * * * 15 369 2146 * 3481 135 * * 2486 1261 0 S 16 3603 * 1272 * * 2709 * 3775 * * * * * * * 1848 * * * * 16 296 2431 * 2585 263 * * 2486 1000 0 G 17 3139 * * * * 1414 3603 * * * * * 1221 * * * * * * * 17 0 * * * * * * 2486 0 0 S 18 * * * 2431 3683 3775 * * * 1529 * 3775 * * * 2606 * 3646 * * 18 0 * * * * * * 2486 0 0 D 19 * * 1737 * * 2025 * * 3775 * * 2352 2431 * * * * * * * 19 141 3429 * 3000 193 * * 2486 1000 0 T 20 * * 3429 3775 * * * * * * * 3775 1920 * * 2059 1961 * * * 20 374 2730 3683 1585 585 * * 2486 1000 0 P 21 2151 * * 2374 * 2594 * * 3647 * * * 2082 * * * * 3317 * * 21 298 2421 * 2185 358 0 * 2479 1339 1000 E 22 2431 * 2038 1715 * 2709 3139 * * * * * * * * * * * * * 22 298 2422 * 2492 282 * * 2486 1392 0 F 23 * * * * 1387 * * * * 3646 * * * * * 2431 * * * 1505 23 0 * * * * * * 2486 0 0 C 24 * 0 * * * * * * * * * * * * * * * * * * 24 0 * * * * * * 2486 0 0 A 25 3809 * * * * * * 3429 1533 * * * * * 1539 2775 * * * * 25 0 * * * * * * 2486 0 0 A 26 296 * * * * * * 2431 * * * * * * * * * * * * 26 0 * * * * * * 2486 0 0 L 27 * * * * * * * * * 0 * * * * * * * * * * 27 0 * * * * * * 2486 0 0 R 28 * * * * * * * * * * * * * 2730 236 * * * * * 28 0 * * * * * * 2486 0 0 S 29 1983 * * * * * * * * * * 2431 * 3139 2730 1750 * * * * 29 0 * * * * * * 2486 0 0 Y 30 3139 * * * 2431 * * * * * * * * * * * * * * 512 30 0 * * * * * * 2486 0 0 A 31 1128 * * * * 2431 * * * * * * * 2730 * 3429 3139 * * * 31 0 * * * * * * 2486 0 0 L 32 * * * * * 2642 * * 2431 1358 * * * 3139 2730 * * * * * 32 0 * * * * * * 2486 0 0 C 33 * 0 * * * * * * * * * * * * * * * * * * 33 0 * * * * * * 2486 0 0 T 34 3139 * * * * * * * * 2431 * * * * * * 862 2730 * * 34 0 * * * * * * 2486 0 0 R 35 * * 2730 * * * * * * * * * * 1707 881 * * * * * 35 0 * * * * * * 2486 0 0 R 36 * * * * * * * * * * 2431 * * * 296 * * * * * 36 0 * * * * * * 2486 0 0 T 37 * * * * * * * 2730 * * * * * * * * 236 * * * 37 0 * * * * * * 2486 0 0 A 38 519 * * * * * * * * * * * * * * 1726 * * * * 38 0 * * * * * * 2493 0 0 R 39 * * * * * * * * 1568 * * * 2758 * 957 * * * * * 39 231 2758 * 0 * * * 2493 1000 0 T 40 1384 * * 2452 * * * * * * * * * 3175 * 2758 2509 * * * 40 0 * * * * * * 2493 0 0 C 41 * 0 * * * * * * * * * * * * * * * * * * 41 0 * * * * * * 2493 0 0 R 42 * * * * * * 2452 * * * * * * * 291 * * * * * 42 0 * * * * * * 2493 0 0 G 43 * * * * * 0 * * * * * * * * * * * * * * 43 0 * * * * * * 2493 0 0 D 44 * * 593 * * * * * * * * 1568 * * * * * * * * 44 0 * * * * * * 2493 0 0 L 45 * * * * * * * 2452 * 291 * * * * * * * * * * 45 0 * * * * * * 2493 0 0 A 46 1824 * * * * * 1952 * * * * * 2452 * * * * 1856 * * 46 0 * * * * * * 2493 0 0 Y 47 * * * * 3727 * * * * * * * * * * * * * * 113 47 0 * * * * * * 2493 0 0 H 48 * * * * * * 0 * * * * * * * * * * * * * 48 0 * * * * * * 2493 0 0 S 49 4919 * * * * * * * * * * * * * * 48 * * * * 49 0 * * * * * * 2493 0 0 A 50 840 * * * * * * * * * * * * * * 2452 1952 * * * 50 0 * * * * * * 2493 0 0 V 51 * * * * * * * 1769 2758 * * * * * * * * 840 * * 51 0 * * * * * * 2493 0 0 H 52 * * * * 3493 * 2509 * * 2695 * * * 2839 3175 * 2758 2452 * * 52 0 * * * * * * 2493 0 0 G 53 * 4919 * * * 869 * * * * 2452 * * * 3493 * * 2758 * * 53 0 * * * * * * 2493 0 0 I 54 * * * * 3175 * * 501 * * * * * * * * * 2452 * * 54 0 * * * * * * 2493 0 0 E 55 3175 * * 1664 * * * * 1880 * * * 2758 * * 2695 * * * * 55 0 * * * * * * 2493 0 0 D 56 * * 457 3493 * * * * * * * * * 2452 * * * * * * 56 0 * * * * * * 2493 0 0 L 57 * * * * * * * * * 0 * * * * * * * * * * 57 0 * * * * * * 2493 0 0 M 58 * * * * 3493 * * * * 2839 1182 * * 2758 * 2452 * * * * 58 0 * * * * * * 2493 0 0 S 59 3493 * * * * * * 2010 2452 * * * * 3175 2758 2174 * * * * 59 0 * * * * * * 2493 0 0 Q 60 * * * 2452 * * * * * * * 2758 * 840 * 3175 * * * * 60 0 * * * * * * 2493 0 0 H 61 * * * * * * 1414 * * * * 2452 * * 2695 * * * * 1798 61 0 * * * * * * 2493 0 0 N 62 * * * 2758 * * * * * * * 489 * * 2839 * * * * * 62 0 * * * * * * 2493 0 0 C 63 * 0 * * * * * * * * * * * * * * * * * * 63 0 * * * * * * 2493 0 0 S 64 * * * * * * * * * * * * 2859 * * 586 2352 * * * 64 0 * * 0 * * * 1716 0 0 //