HHsearch 1.5 NAME c4ue4C_ FAM FILE c4ue4C_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4ue4C_.a3m DATE Sat Sep 12 08:19:25 2015 LENG 102 match states, 102 columns in multiple alignment FILT 100 out of 127 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.3 EVD 0.3950 -0.9049 SEQ >ss_dssp CHHHHHHHHHHHHHHCSTTSSSSTTTCSSCCSSSCCSCCSCSSTTTHHHHHHHSCHHHHHCGGGCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH CC >sa_dssp ECDDCCCCDECCCDDDCCCCDCCCDEDEEBBCECDCDCDDCDCDDCDCDCCCDCDDDCCDCDDDDCEECCCCCCDEDEDDCDDDDCCCCCCDCCCCCCDD DE >ss_pred CHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHCHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH HC >ss_conf 9689999999998027989999965580013541000005999999999997399999838310428999999753678989999999999999999975 19 >Consensus TlxDfxxQlxxixkMGxlxxilxmiPGxxxxxxxxxxxxxxxxlkrxxxIixSMTxxErxxpxiixxSRxxRIAxGSGxxxxeVnxLlkxxxxmxkmmkk ms >c4ue4C_ TLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINASRRKRIAKGSGTSVQEVNRLLKQFDEMKKMMKQ MT >UniRef50_P49966(329-432:495) Signal recognition particle 54 kDa protein 2 n=72 Tax=root RepID=SR542_ARATH E=3e-26 s/c=1.14 id=31% cov=100% TLRIMYDQFQNMLNMGPLKEVFSMLPGMrAEMMPEGHEKESQAEIKRYMTMMDSMTNEELDssNPKVFNESRIMRIARGSGRIVREVMEMLEEYKRLTTM WGKV- >UniRef50_D0MV06(86-174:218) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0MV06_PHYIN E=2e-13 s/c=0.87 id=23% cov=86% -LNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQ-------QMKTFMDILESMEPEYRESPRLINGKIKRKISEKAGHSPEDINNMLRNYEQLS----- -- >UniRef50_UPI00006CE525(327-428:460) SRP54-type protein, GTPase domain containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CE525 E=3e-19 s/c=0.94 id=23% cov=100% TLRALQQNYKSILKMGSLNQFMSMIPGMQNIIQGQISEKEQiNKIKKSLTIMDSMSNDELDGITQITQKQLFRISKGSGQPIENVKLLIDEQKTFAKTLK KI- >UniRef50_C7DI21(319-417:431) GTP-binding signal recognition particle SRP54 G-domain n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI21_9EURY E=6e-22 s/c=1.06 id=32% cov=97% -FETFYAQLKALNKMGPLKNVFGML--GAPDVPKELVEEGESKLNKYKVIISSMTKEERQNEKLLhDPSRAERVARGSGTTEKDVRALLSDFNKMKKSFN ML- >UniRef50_D2V799(327-429:470) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V799_NAEGR E=1e-14 s/c=0.79 id=30% cov=97% TFKDYQDQIQMLKKMGSLKNMASYLP--EQFIGKFRDKLDNMDLSFIdnhEHIISCMSEQEKLQPLLVESSsaRRLDLAKRAKVEVTDVNKMLKMYEKMK SFISK-- >UniRef50_A2E0A3(327-431:494) SRP54-type protein, putative n=2 Tax=Trichomonas vaginalis RepID=A2E0A3_TRIVA E=8e-14 s/c=0.74 id=23% cov=95% SFRDLYNQYKMVLDVGNFNSMLDSItiaqgikPGMKN-----DPEHTKDTVKRILVVIDAMSTSEIENPLLFKndESRIARLCSGSGMPPPFVQYVINEQ RRWETMFKRM- >UniRef50_D0JBC6(328-427:452) Signal recognition particle protein n=2 Tax=Blattabacterium RepID=D0JBC6_BLASB E=2e-20 s/c=1.00 id=30% cov=98% -FNDLLEQIRHIKKIGSIKNIISMIPGVDRFFS-FNGENQKDSFKKIEAMIHSMTPDERENPKLLTDiERKRRISKGSGIPLSHLDLFFRQFYDINKIMK KI- >UniRef50_P75054(328-428:450) Signal recognition particle protein n=5 Tax=Mycoplasma RepID=SRP54_MYCPN E=2e-18 s/c=0.93 id=31% cov=98% -LEDLLLYMEQMNQMGSVSSIVKMLPG-NLTVSDDHVESIEAKVKLWKVLINSMTREERRHPKLINrdPSRKQRIIKGSGRKMDELNKLMKEWSKLQTKT AEM- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * 3028 189 * * * 1 0 * * * * * * 4887 0 0 L 2 * * * * 2025 * * 5557 * 778 3548 * * * * * * 5743 * 4452 2 0 * * * * * * 5278 0 0 D 3 * * 2966 2398 * 4232 * 6699 3463 6802 6284 2320 * 6115 1989 6818 4991 * * * 3 0 * * * * * * 5278 0 0 D 4 5196 * 233 5370 * 5042 * 6651 * 5317 5456 * * * * * 6682 * * * 4 0 * * * * * * 5291 0 0 F 5 * * * * 1058 * * * * 1759 2686 * * * * * * * 5767 4303 5 0 * * * * * * 5293 0 0 L 6 6973 * * 5884 * 6710 6201 5323 3481 1686 6325 * * 3710 3260 6973 * 3992 * 1930 6 0 * * * * * * 5293 0 0 E 7 4297 * 2458 2033 * 6837 5735 5743 2637 4886 7005 3618 * 4653 6567 3692 4360 5931 * * 7 0 * * * * * * 5293 0 0 Q 8 6284 * * 5884 5735 * 4064 6564 * 6459 7640 5998 * 358 * 5167 * 6531 * 5049 8 0 * * * * * * 5293 0 0 L 9 * * * * 2694 * * 2556 * 1382 2739 * * * * 5251 * 5266 5550 3872 9 0 * * * * * * 5286 0 0 G 10 4118 * 6865 2197 * 6247 * 7105 2073 4180 * 4336 * 2325 3333 4699 5992 * * * 10 0 * * * * * * 5286 0 0 Q 11 3065 * * 5949 7448 5801 6384 * 3254 4629 2886 2881 * 2056 6270 3615 3887 * * 6671 11 0 * * * * * * 5286 0 0 V 12 6981 * * * 4810 * * 1456 * 2259 2854 5051 * * * * 6609 2291 * * 12 0 * * * * * * 5286 0 0 R 13 3655 5736 5706 5424 * 5778 * * 2189 2911 3837 3861 * 2715 3445 3843 5510 6118 * * 13 0 * * * * * * 5286 0 0 N 14 * * 4882 5051 * * * * 672 * * 2608 * 4679 3998 5375 5736 * * * 14 0 * * * * * * 5286 0 0 M 15 4761 * * 6309 5897 * * 3940 * 2641 607 * 4936 * * * * 5721 * * 15 22 * 6040 * * * * 5292 0 0 G 16 * * * * * 62 * * * * * * * * * 4565 * * * * 16 0 * * * * * 0 5269 0 1000 P 17 * * 6077 * * 2472 * * 6275 4180 * 5278 1347 5768 6901 1838 6417 * * * 17 0 * * * * 0 * 5269 0 1000 L 18 4806 * * * 3564 * * 2141 * 1297 2542 * 6131 * 6040 * * 4483 * * 18 0 * * * * * * 5292 0 0 D 19 4202 * 3473 4522 * 3422 5396 * 2467 * 5742 3071 * 4427 5484 1927 4487 * * * 19 0 * * * * * * 5292 0 0 E 20 5726 * 4235 4553 * 2898 6523 * 1734 * * 3058 * 3135 4807 2941 * * * 4649 20 0 * * * * * * 5304 0 0 L 21 * * * * 4066 * * 1476 * 1739 2890 * * * * * * 3092 5102 * 21 0 * * * * * * 5304 0 0 L 22 3211 * * * 4190 * * 3752 * 1430 2089 * * * 5102 6047 6635 3286 * * 22 0 * * * * * * 5304 0 0 Q 23 5048 * 3965 3876 * 2634 * * 2766 * * 4033 * 3675 4859 1534 * * * 6582 23 0 * * * * * * 5304 0 0 M 24 4178 * * * 3829 * 6440 5747 3630 3784 727 * * 6429 * 4712 * * * 4756 24 0 * * * * * * 5304 0 0 M 25 * 5904 * * 4440 * * 1253 * 1494 3807 * * * * * 5747 3787 * * 25 100 5726 4374 2807 222 * * 5304 1000 0 P 26 * * * * 6120 5719 * * * * * * 84 * * 5414 * * * * 26 114 4969 4510 1478 642 400 2047 5251 1933 2424 G 27 5877 * * * 5693 310 * 4535 * 3756 * 6015 * * * 5357 * * * * 27 31 * 5540 * * 1035 966 5253 0 2501 A 28 4194 * * * 2881 4197 * 5397 * 2876 1333 4614 * * * 5363 6225 3061 * * 28 62 5561 5561 1365 709 692 1392 5241 1601 2205 G 29 3207 * 5219 5458 6643 1495 5079 6495 4026 6467 * 2958 5822 5413 * 2463 6310 * * * 29 101 5096 4693 0 * 1322 737 5312 1875 2105 K 30 4635 6762 3755 4929 * 2745 * 5123 2699 5368 5793 2419 5152 2815 5618 3849 * 5952 * 7284 30 144 4279 4516 831 1191 2599 260 5329 2676 2588 M 31 5342 * 4275 6466 3453 5844 * 3954 3956 2156 2218 4351 5789 4931 * 5115 6232 3601 * 6507 31 77 6896 4529 0 * 996 1004 5264 1000 3104 K 32 4358 * 6763 5942 4510 * * 2960 2881 3373 4268 6895 2790 * 5929 2866 4081 3272 * * 32 195 3757 4258 226 2784 745 1310 5232 2925 3212 G 33 3183 * 3918 4209 * 3060 * 5748 3736 * * 4042 2672 3229 5409 2263 * * * * 33 100 6842 4102 1000 1000 1981 421 5198 1000 3233 L 34 4766 * 2902 4077 * 3647 6949 4389 2631 2884 3452 5717 5632 4593 5645 4439 4937 3899 * * 34 55 6593 5207 1000 1000 1631 562 5181 1000 3495 K 35 4720 * 3675 3033 4747 2576 * 6861 3963 3981 4522 4886 5194 2626 6831 3746 * 3826 * * 35 99 * 3920 * * 1332 730 5164 0 3382 N 36 3944 * 2523 3667 5124 3235 5047 5836 4179 4193 4757 3130 6686 3195 5172 3990 5108 * * * 36 75 * 4311 * * 796 1238 5121 0 3621 I 37 4488 * 3039 3245 6711 4073 6471 2921 6301 3134 3670 4943 5621 6326 6584 3630 * 2778 * 6853 37 65 5999 5147 1138 874 726 1339 5161 1594 3357 Q 38 4767 * 3094 2042 * 6612 * 5077 3384 4938 6329 3376 * 2252 4577 4316 6073 6755 * * 38 28 * 5709 * * 1345 722 5166 0 2841 V 39 4892 * 4475 2396 5188 6411 5622 2972 4862 2887 4095 6299 4609 4167 6506 4749 6254 2779 * * 39 18 * 6369 * * 1042 959 5165 0 2509 D 40 3177 * 1345 5187 * 3297 * 6297 5455 * 6737 4476 5450 3950 * 3481 3755 5295 * * 40 34 6011 6975 0 * 585 1585 5199 1000 2158 E 41 6832 * 2918 1344 * 4193 6606 * 4119 * * 4007 5078 3703 * 3503 3906 5710 * * 41 56 4714 * 668 1431 * 0 5233 1685 1620 K 42 3816 * 3080 4590 * 4409 * * 1534 5623 4463 3942 * 5275 3778 3547 4744 * * 5347 42 18 * 6358 * * 1016 984 5233 0 1620 Q 43 4590 * 4366 2948 * 5621 5585 5633 2137 * 6263 5508 6979 2999 2661 3611 3719 6994 * * 43 11 6993 * 1000 1000 929 1075 5307 1000 1510 L 44 6460 6422 * * 2512 * * 2966 * 1346 2574 * * * * * 6043 3365 * * 44 0 * * * * * 0 5306 0 1000 N 45 4227 * 4174 5640 6893 5936 * 5271 832 * * 5103 * 4645 3854 5117 4995 4050 * * 45 0 * * * * 0 * 5306 0 1000 H 46 6447 7048 6784 * 4826 7280 4779 4481 1562 6378 5502 6549 * 7492 1449 6285 5102 4523 * 6918 46 0 * * * * * * 5304 0 0 V 47 5468 * * 6689 2706 * * 2016 6887 4379 3027 5431 * 5346 * 5148 5108 4235 4451 2441 47 32 5490 * 1585 585 * * 5304 1000 0 E 48 * * 5810 1838 * 5747 * 3812 2518 2964 3171 5154 * 4992 3840 6059 6338 4939 * 6705 48 0 * * * * * * 5304 0 0 A 49 1301 6766 5102 * * 6466 5490 4217 * * * 5712 * * 5819 3558 3164 2624 * 3776 49 0 * * * * * * 5304 0 0 I 50 * * * * 5819 * * 627 * 3581 2325 * * * * * * 4271 * * 50 0 * * * * * * 5304 0 0 I 51 * 6477 * * 4975 * * 958 * 3172 1913 * * * * * * 3925 * * 51 0 * * * * * * 5304 0 0 K 52 * 6541 1505 5102 * 5395 5272 * 5495 3562 * 2463 * 3445 5403 3005 7468 5819 * 7258 52 0 * * * * * * 5304 0 0 S 53 4971 5490 * * * 6876 * * * * 5819 * * * * 121 * * * * 53 0 * * * * * * 5304 0 0 M 54 * * * * * * * * * 4873 50 * * * * * * * * * 54 0 * * * * * * 5304 0 0 T 55 5630 5747 5819 5102 * * * * * * * 4573 * * * 3231 385 * * * 55 16 6462 * 3170 170 * * 5304 1000 0 V 56 3958 * 3557 3356 6558 * 6049 5671 2683 4324 7039 4434 1953 6440 4329 4482 4375 5311 * 6582 56 17 6449 * 1000 1000 * * 5304 1000 0 L 57 3421 * 4553 1791 5392 6245 * * 2004 3966 * * 6954 3179 5167 5726 5451 * * 4766 57 0 * * * * * * 5304 0 0 E 58 6049 * 6449 128 * * * * 6462 * * * * * * * 5819 * * 5102 58 13 6773 * 3170 170 * * 5304 1000 0 K 59 5819 * * * * * * 5726 3113 1841 4928 * * * 931 6449 * * * * 59 27 5747 * 0 * * * 5304 1000 0 E 60 3003 * 2011 2359 * * * 5484 3332 4179 * 7011 * 4623 3067 4374 5656 5663 * * 60 70 4391 * 1274 769 * * 5304 2107 0 Q 61 5450 4583 3012 4164 4525 3928 4393 5062 3483 * * 1733 * 4028 5466 3661 * * * 5996 61 0 * * * * * * 5304 0 0 P 62 4446 * 5594 5065 6891 5747 6330 5584 5654 4911 5111 * 538 5904 * * 4353 * * 7221 62 66 5082 6049 1839 473 * * 5304 1632 0 D 63 5683 * 2207 2809 5544 4744 6424 5789 2525 4265 5757 5344 * 4913 3396 4052 5258 4635 * 6786 63 69 4416 * 1384 697 * 0 5306 2216 1000 I 64 5589 * * 5485 6145 * * 1496 5501 1661 5152 * 4935 4716 6528 5724 5328 3375 * * 64 13 * 6764 * * * 0 5306 0 1000 I 65 6400 * 6456 * 3110 * * 1430 * 1593 4620 5753 * * * * 4282 4390 * * 65 166 3202 * 2118 378 * 0 5302 3386 1637 N 66 4683 * 3532 3727 * 5261 * * 2386 * * 1457 * 5485 4723 4300 3523 5680 * * 66 214 2989 6389 1738 514 887 1123 5302 3510 1637 A 67 2952 * 5517 2957 * 2320 6811 * 5920 6817 4683 5209 2415 3813 4751 3649 5333 6257 * 7333 67 56 4716 * 1059 943 874 1138 5294 2075 1583 S 68 6726 * * 5019 * 5731 * * 3091 * * 5742 * 5275 * 461 4251 * * * 68 83 4161 * 783 1255 * 0 5306 2312 1000 R 69 * * * * * * * 5079 * * 6614 * * 6023 82 * * * * * 69 0 * * * * * 0 5306 0 1000 R 70 6716 * 6253 * * * * 1745 2032 4480 3959 * * * 2047 6416 6618 4023 * * 70 0 * * * * * 0 5306 0 1000 K 71 4339 * * 4423 6023 * 7228 3593 2306 3648 3845 4841 * 3841 1861 6680 5507 4808 * * 71 0 * * * * 0 * 5306 0 1000 R 72 * * 5490 * * * * * 5102 * * * * * 94 * 6447 * * * 72 0 * * * * * * 5304 0 0 I 73 * 6049 * * * * * 300 * 3660 * * * * * * * 3418 * * 73 19 6265 * 1000 1000 * * 5304 1000 0 A 74 424 4979 * * * * * 4742 * 6338 * * * * * 2754 6275 6352 * * 74 0 * * * * * * 5304 0 0 K 75 3784 * 7280 4054 * * 5706 5148 2035 3665 6248 6876 * 4222 1544 4406 6047 6638 * * 75 22 * 6049 * * * * 5304 0 0 G 76 * * * 6253 * 100 * * 5079 * * * * * 5362 * * * * * 76 0 * * * * 0 * 5306 0 1000 S 77 2291 5201 * * * * * * * * * * * * * 407 6100 * * * 77 0 * * * * * * 5304 0 0 G 78 * * * * * 55 * * 5490 * * * * * * * 6049 * * * 78 0 * * * * * * 5304 0 0 T 79 6853 5406 * * * * 3836 6400 5207 5606 4601 4900 * 4967 2346 4210 1700 2607 6822 * 79 0 * * * * * * 5304 0 0 S 80 * * 4075 4281 * 5539 4077 6724 3342 6285 * 5374 3779 4717 5461 1892 2006 * * 6440 80 0 * * * * * * 5304 0 0 V 81 4825 * * 2765 6887 * * 2989 5747 3983 6378 * 2314 5748 * 6151 5064 1619 * * 81 0 * * * * * * 5304 0 0 Q 82 3585 * 3858 2515 6689 5485 * * 3138 * 7142 4806 5726 2460 3787 3281 4561 5708 * 4413 82 0 * * * * * * 5304 0 0 E 83 4790 * 1464 1252 5726 6245 6400 * 6892 * 5563 5396 * 4436 6918 * 6784 5586 * * 83 0 * * * * * * 5304 0 0 V 84 * * * * 5183 6248 * 3200 * 4014 6277 * * * * * * 366 * * 84 0 * * * * * * 5305 0 0 N 85 6345 * 5127 4378 * * * 4375 3344 5628 5577 1131 * 4018 3830 3747 * 4063 * * 85 0 * * * * * * 5305 0 0 R 86 5202 * 5299 1804 * * * 5702 2566 4076 4117 3882 * 2948 3104 6579 6277 * * 5724 86 22 6047 * 3459 138 * * 5305 1000 0 L 87 * * * * 3651 * * 5623 * 421 3476 * * * * * * 4249 * 6538 87 0 * * * * * * 5305 0 0 L 88 * * * * 4314 * * 1870 * 900 4511 6047 * * 5511 * * 4077 * * 88 0 * * * * * * 5305 0 0 K 89 6253 * 3709 2926 * * 5332 6345 1272 6766 * 4258 * 3629 4360 4167 3828 6575 * * 89 0 * * * * * * 5305 0 0 Q 90 5512 * 4457 2577 * * 6953 5890 3593 5694 4853 2974 * 1447 4794 4673 * 6698 * 5357 90 0 * * * * * * 5305 0 0 F 91 5628 * * * 1243 * 2978 5784 * 4876 6158 * * 3912 * * * * 4993 1908 91 11 6996 * 3585 126 * * 5305 1000 0 D 92 6091 * 4517 2417 5528 3927 7019 * 1859 6055 6158 2992 * 5516 3795 4001 4551 6979 * 5509 92 12 6947 * 4087 87 * * 5305 1000 0 E 93 5258 * 5082 3331 6796 7099 * * 2624 5784 3790 3868 * 2228 3060 3660 3815 6828 * 6043 93 0 * * * * * * 5305 0 0 M 94 3674 * * * 2637 5440 * 4259 * 3557 1089 * * 5895 * 4849 5763 4578 5723 * 94 0 * * * * * * 5311 0 0 K 95 3434 * 6393 4353 * 6272 6240 5231 1766 * 7265 4790 * 3012 2609 2739 6717 * * 6633 95 0 * * * * * * 5311 0 0 K 96 4471 * 4707 3984 * 4267 * * 1264 4641 6576 4125 6408 3698 3862 4505 3956 6483 * * 96 0 * * * * * * 5226 0 0 M 97 5308 * * * 3939 * * 3577 4735 3330 1040 6429 * 4227 * 6527 4704 3502 * * 97 24 5894 * 2585 263 * * 5178 1000 0 M 98 3694 * * * 2896 * * 3067 * 3909 1021 * * * * 6539 6237 4177 5041 * 98 17 6389 * 1585 585 * * 5168 1000 0 K 99 5429 * 6226 5627 * 3169 * * 948 5061 * 5134 * 3190 4286 3568 * 6645 * * 99 0 * * * * * * 5134 0 0 Q 100 4963 * 6538 4028 * 4225 5828 * 1186 * 4253 5581 * 2646 3610 4286 5725 * * * 100 0 * * * * * * 5127 0 0 M 101 6290 * * * 3716 * * 2319 * 2541 1154 * * * * * * 3484 * * 101 0 * * * * * * 5074 0 0 T 102 * * * * * * * * * * * * * * * 867 1146 * * * 102 0 * * 0 * * * 4050 0 0 //