HHsearch 1.5 NAME c4udeA_ FAM FILE c4udeA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4udeA_.a3m DATE Sat Mar 5 08:23:55 2016 LENG 85 match states, 85 columns in multiple alignment FILT 14 out of 18 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.4 EVD 0.3988 -0.1981 SEQ >ss_dssp CHHHHHHHHHHHHHHTTTTCCHHHHHHHHHTTCCHHHHHTSCHHHHHHHHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHCC >sa_dssp EDEDEECCDDACEBBDEDEBDEEABDCACECECCCEDABEBDDDDBCDCBDDADEEDEBEBEEEADEBBBDAADCCCEDCDEEEE >ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >ss_conf 9510567653999997717688999999874003998853836779999999998752143567778789999999975887509 >Consensus xaxxxxexxxLExlfxxyGvrpxTxakixemGFTxxTLvxmxeeEldxxmxslxxxxrxdLlvGExxGIKxAvRaxkrrxxxlex >c4udeA_ GAMARKELSSLEELFRHYGVRYMTLTKMVEMGFTVNTLVNMTEQELDDVIRTLVDIYRVDLLVGEKYGIKSAVRAEKRRLDELER >UniRef50_O04407(48-129:404) Floricaula/leafy-like protein FL1 n=41 Tax=Embryophyta RepID=NEED_PINRA E=9e-26 s/c=1.43 id=68% cov=96% ---GRKDLKSLEDLFKEYGVRYVTLAKMTEMGFTANTLVNMTEEEIEDLMKTLVELYHMDLLIGERYGIKSAIRAEKKRLqDSLE- >UniRef50_Q84KZ6(25-106:458) LFY-like protein OrcLFY n=39 Tax=Magnoliophyta RepID=Q84KZ6_DACRO E=1e-17 s/c=1.11 id=48% cov=95% ---AAESSRELEEVFEGYGVRYSTIARIGDLGFTASTLAGMREEEVDDMMATVAHLFRWDLLVGERYGIKAAIRAERRRIEAI-- >UniRef50_O04064(41-121:377) Floricaula/leafy homolog n=144 Tax=Tracheophyta RepID=FLLH_POPTR E=4e-30 s/c=1.63 id=60% cov=96% -AVRPRELCGLEELFQAYGIRYYTAAKIAELGFTVNTLLDMKDEELDEMMNSLSQIFRWDLLVGERYGIKAAVRAERRRLDE--- >UniRef50_Q9LLB5(35-112:387) BotdiFLO protein n=3 Tax=Tracheophyta RepID=Q9LLB5_BOTDI E=6e-28 s/c=1.60 id=68% cov=93% ----RKQMKSLEELFKDYGVRITTIAKVVEMGFTVSTLVNMTEQEIDDVIKTILDGYHIELLVGERYGFKSAIRAEKRRHEE--- >UniRef50_Q94IF4(33-117:349) FLORICAULA/LEAFY homolog 2 n=6 Tax=Bryophyta RepID=Q94IF4_PHYPA E=1e-25 s/c=1.38 id=48% cov=100% -ALAGRESRRLKELFKDFGVQPSTVTVMGQMGFTLSTLINMKDEEVDFVIKSMIEEYHLDLLMGEQFGIKAAVRAKRRLvVEELEQ >UniRef50_Q58WM0(52-126:261) FL (Fragment) n=32 Tax=Poaceae RepID=Q58WM0_CHRFU E=6e-22 s/c=1.40 id=45% cov=89% --------RELEDLVAGYGVRPSTVARISELGFTASTLLGMTERELDDMMAALAGLFRWDVLLGERFGLRAALRAERGRVMSL-- >UniRef50_A9TLG9(319-385:559) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TLG9_PHYPA E=6e-06 s/c=0.77 id=38% cov=80% ----------LDTFFDGFGLRPETVFKIKEMGFTAKTLMSNVD-ELPSLLESINQ--HHLLTLGEEWGIKGA--AKKWQLDQ--- >UniRef50_A9SR45(66-133:534) Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9SR45_PHYPA E=9e-05 s/c=0.71 id=38% cov=80% ---------RLEDILRGFAKDPKALAhKLGD--FTVRTLVGMNEEEY----QKLFELLRSDLSVADFFAIKVAVREAKKRFNA--- >UniRef50_A9SZ72(115-185:254) Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9SZ72_PHYPA E=4e-17 s/c=1.26 id=32% cov=85% ------EAADLESFFDGFGIRPETIGKIKEMGFTGKTFMSNVD-ELLTLLDSIKQ--HCHLTLGEEWGIKGAAKKWQKDH----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 A 2 0 * * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1779 0 0 M 3 2075 * * * * * * * * 1783 1967 * * * * * * 2208 * * 3 0 * * * * * * 1779 0 0 A 4 909 * * * 2673 2611 * * * * * * * * 2765 * * * * * 4 0 * * * * * * 1982 0 0 R 5 2723 * * * * 1664 * * * * * * 2937 * 1313 * * * * * 5 0 * * * * * * 2029 0 0 K 6 * * * 2851 * * * * 1409 * 3136 * * * 1430 * * * * * 6 0 * * * * * * 1997 0 0 E 7 * * 3294 789 * * * * * * * * * 3146 3436 3131 * * * * 7 0 * * * * * * 2258 0 0 L 8 2518 * * * * * * * * 1128 3146 * * * * 1972 * * * * 8 0 * * * * * * 2258 0 0 S 9 2613 3779 * * * 2727 * * 2396 * * * * * 1580 3501 * * * * 9 0 * * * * * * 2335 0 0 S 10 * * 2779 2498 * 2376 * * * * * * * * 1995 2096 * * * * 10 0 * * * * * * 2520 0 0 L 11 * * * * * * * * * 0 * * * * * * * * * * 11 0 * * * * * * 2548 0 0 E 12 * * 2892 377 * * * * 3394 * * * * * * * * * * * 12 0 * * * * * * 2548 0 0 E 13 * * 1795 1195 * 4161 * * * * * * * * * 3566 2892 * * * 13 0 * * * * * * 2548 0 0 L 14 * * * * 2190 * * 2897 * 781 * * * * * * * 3955 * * 14 0 * * * * * * 2548 0 0 F 15 * * * * 369 * * * * 2897 * * * * * * * 3449 * * 15 0 * * * * * * 2548 0 0 R 16 3449 * 2190 3955 * 4161 * * 2114 * * * * 2835 2338 * * * * * 16 0 * * * * * * 2548 0 0 H 17 3414 * 2217 4005 * 973 3977 * * * * * 4161 * * * * * * * 17 0 * * * * * * 2548 0 0 Y 18 * * * * 1157 * * * * * * * * * * * * * * 859 18 0 * * * * * * 2548 0 0 G 19 2897 * * * * 208 * * * * * * * * * * * * * * 19 0 * * * * * * 2548 0 0 V 20 * * * * * * * 1834 2897 2892 * * * * * * * 1150 * * 20 0 * * * * * * 2548 0 0 R 21 * * 2897 * * * * * * * * * * 3394 376 * * * * * 21 0 * * * * * * 2548 0 0 Y 22 * * * * 4161 * * 3764 * * * * 889 * * * * * * 1598 22 0 * * * * * * 2548 0 0 M 23 * * * 2190 4432 * * * 2897 * 3977 * * * * 1993 3764 4005 * 2740 23 0 * * * * * * 2548 0 0 T 24 2897 * * * * * * * * * * * * * * * 208 * * * 24 0 * * * * * * 2548 0 0 L 25 2351 * * * * * * 2168 * 1943 * * * * * * * 1638 * * 25 0 * * * * * * 2548 0 0 T 26 799 * * * 3911 3566 * * * * * * * * * * 2656 3114 * * 26 208 2897 * 0 * * * 2548 1000 0 K 27 * * * * * * * * 417 * * * * * 2680 * * 3394 * * 27 0 * * * * * * 2548 0 0 M 28 * * * * * * * 808 * 2897 2178 * * * * * * 3764 * * 28 0 * * * * * * 2548 0 0 V 29 2351 * * * * 1767 * * 2190 * * * * * * 3449 4005 2866 * * 29 0 * * * * * * 2548 0 0 E 30 * * 2331 502 * * * * * * * * * 3394 * * * * * * 30 208 * 2897 * * * * 2548 0 0 M 31 * * * * * * * * * 1496 632 * * * * * * * * * 31 0 * * * * * 0 2335 0 1000 G 32 * * * * * 0 * * * * * * * * * * * * * * 32 0 * * * * 0 * 2335 0 1000 F 33 * * * * 0 * * * * * * * * * * * * * * * 33 0 * * * * * * 2548 0 0 T 34 * * * * * * * * * * * * * * * * 0 * * * 34 0 * * * * * * 2548 0 0 V 35 1135 * * * * 3566 * * * 3394 * * * * * * * 1453 * * 35 0 * * * * * * 2548 0 0 N 36 * * * * * * * * 2190 * * 2187 * * 2897 1228 * * * * 36 0 * * * * * * 2548 0 0 T 37 * * * * * * * * * * * * * * * * 0 * * * 37 0 * * * * * * 2548 0 0 L 38 * * * * 3566 * * * * 127 * * * * * * * * * * 38 0 * * * * * * 2548 0 0 V 39 3955 * * * * * * 3394 * 2857 2190 * * * * * * 1049 * * 39 0 * * * * * * 2548 0 0 N 40 * * 2835 * * 1530 * * * * * 1763 * * * 2190 * * * * 40 0 * * * * * * 2548 0 0 M 41 * * * * * * * * * * 357 2190 * * * * * * * * 41 0 * * * * * * 2548 0 0 T 42 * * * * * * * * 1780 3874 * 2897 * * 3955 * 1781 2728 * * 42 0 * * * * * * 2548 0 0 E 43 * * 1111 897 * * * * * * * * * * * * * * * * 43 357 * 2190 * * * * 2548 0 0 Q 44 * * * 489 * * * * * * * * * 2513 3154 * * * * * 44 0 * * * * 0 * 2231 0 1221 E 45 * * * 0 * * * * * * * * * * * * * * * * 45 0 * * * * * * 2548 0 0 L 46 * * * * * * * 2879 * 935 * * * * * * * 2273 * 2897 46 208 * 2897 * * * * 2548 0 0 D 47 * * 701 2863 * * * * * 3414 * * 2703 * * * * * * * 47 0 * * * * * 0 2335 0 1000 D 48 * * 1266 2134 3199 * * * * * * * * * * 2703 3414 * * * 48 0 * * * * * 0 2335 0 1000 V 49 * * * * * * * * * 1639 1285 * * * * * * 1897 * * 49 0 * * * * * 0 2335 0 1000 I 50 * * * * * * * 1897 * 2015 1047 * * * * * * * * * 50 0 * * * * 0 * 2335 0 1000 R 51 2680 * 3566 2892 * * * * 2114 * * 2351 * 2897 3977 * * * * * 51 0 * * * * * * 2548 0 0 T 52 3449 * * * * * * * 2897 * * * * * * 971 1922 * * * 52 0 * * * * * * 2548 0 0 L 53 * * * * * * * 1772 * 869 3394 * * * * * * 3955 * * 53 0 * * * * * * 2548 0 0 V 54 2680 * * * 2897 * * 3394 3566 3764 * 2892 * * * 2351 * 2991 * * 54 0 * * * * * * 2548 0 0 D 55 * * 2866 1778 * 3449 2576 * * * * * * 1681 * * * * * * 55 357 * 2190 * * * * 2548 0 0 I 56 * * * 3019 * 3405 * 1828 * 998 * * * * * * * * * * 56 0 * * * * * 0 2231 0 1221 Y 57 * * * * 1123 * * * * 2663 * * * * * * * * * 1385 57 0 * * * * 0 * 2231 0 1221 R 58 * * * * * * 1151 * * * * * * * 863 * * * * * 58 0 * * * * * * 2548 0 0 V 59 * 3566 * * * * 2892 3764 * 3394 4005 * * * * 2897 * 3977 1506 * 59 0 * * * * * * 2548 0 0 D 60 * * 725 2508 * * 3566 * * 3911 * * 3874 * * * * * * * 60 0 * * * * * * 2548 0 0 L 61 * * * * * * * * * 139 * * * * * * * 3449 * * 61 0 * * * * * * 2548 0 0 L 62 * * * * * * * * * 629 * * * * * 2897 2190 * * * 62 0 * * * * * * 2548 0 0 V 63 * * * * * * * 4005 * 1686 3394 * * * * * * 911 * * 63 0 * * * * * * 2548 0 0 G 64 2897 * * * * 208 * * * * * * * * * * * * * * 64 0 * * * * * * 2548 0 0 E 65 * * 2897 208 * * * * * * * * * * * * * * * * 65 0 * * * * * * 2548 0 0 K 66 * * * 2190 2897 * * * 3977 * * * * 3394 1035 * * * * * 66 0 * * * * * * 2548 0 0 Y 67 * * * * 1640 * * * * * * * * * * * * * 2190 1121 67 0 * * * * * * 2548 0 0 G 68 2897 * * * * 208 * * * * * * * * * * * * * * 68 0 * * * * * * 2548 0 0 I 69 * * * * 3764 * * 261 * 3449 * * * * * * * * * * 69 0 * * * * * * 2548 0 0 K 70 * * * * * * * * 139 * * * * * 3449 * * * * * 70 0 * * * * * * 2548 0 0 S 71 1161 * * * * 2190 * * * * * * * * * 2326 * 2897 * * 71 0 * * * * * * 2548 0 0 A 72 0 * * * * * * * * * * * * * * * * * * * 72 99 * 3911 * * * * 2548 0 0 V 73 2355 * * * * * * 1966 * 3413 * * * * * * * 1137 * * 73 0 * * * * * 0 2535 0 1000 R 74 * * * * * * * * 2205 * * * * * 353 * * * * * 74 0 * * * * 0 * 2543 0 1000 A 75 544 * * 2832 * * * * 2524 * * * * * * * * * * * 75 0 * * * * * * 2558 0 0 E 76 2812 * * 1013 * * * * 2456 * * * * * * * * * 2475 * 76 0 * * * * * * 2585 0 0 K 77 * * * * * * * * 1151 * * * * 2475 1435 * * * * * 77 0 * * * * * * 2585 0 0 R 78 * * * * * 3276 * * 1662 * * * * * 990 * * * 3692 * 78 0 * * * * * * 2585 0 0 R 79 * * 3012 * * * * * * 3210 * * * 3258 592 * * * * * 79 165 3210 * 0 * * * 2610 1000 0 L 80 * * * * 2782 * 2246 3556 * 1547 * * * * * * * 2207 * * 80 133 3503 * 0 * * * 2610 1000 0 D 81 * * 1272 1682 * * * * * * 3089 2672 * * * * * * * * 81 0 * * * * * * 2448 0 0 E 82 2003 * * 1331 * * * * * * * * * 2757 * 2285 * * * * 82 0 * * * * * * 2448 0 0 L 83 * * * * * * * 2394 * 305 * * * * * * * * * * 83 0 * * * * * * 1882 0 0 E 84 * * * 0 * * * * * * * * * * * * * * * * 84 0 * * * * * * 1588 0 0 R 85 * * * * * * * * * * * * * 1000 1000 * * * * * 85 0 * * 0 * * * 1426 0 0 //