HHsearch 1.5
NAME  c4u39N_
FAM   
FILE  c4u39N_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c4u39N_.a3m 
DATE  Sat Mar 21 08:15:03 2015
LENG  27 match states, 27 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.1 
EVD   0.5012  4.1382 
SEQ
>ss_dssp
CCCCCCHHHHHHHHHHHHHCSSHHHHC
>sa_dssp
EDEDEEECCEDBDDCDEDECDEEDDCD
>ss_pred
CEEEEEEHHHHHHHHHHHHHHHHHHCC
>ss_conf
958988521699996205778887409
>Consensus
gvvlvaweiraklkeygrtxxyvkdwx
>c4u39N_
GVVLVAWEIRAKLKEYGRTFQYVKDWI
>UniRef50_Q65HS6(16-37:58) Putative uncharacterized protein n=6 Tax=Bacillus RepID=Q65HS6_BACLD  E=0.001 s/c=2.03 id=83% cov=85%
-----AWEIRAKLKEYGRTHHYVKDWL
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
G 1    *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

V 2    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

V 3    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

L 4    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

V 5    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	5
       0	*	*	*	*	*	*	1000	0	0	

A 6    0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1099	0	0	

W 7    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	7
       0	*	*	*	*	*	*	1099	0	0	

E 8    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1099	0	0	

I 9    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1099	0	0	

R 10   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	10
       0	*	*	*	*	*	*	1099	0	0	

A 11   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1099	0	0	

K 12   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1099	0	0	

L 13   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1099	0	0	

K 14   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1099	0	0	

E 15   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1099	0	0	

Y 16   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	16
       0	*	*	*	*	*	*	1099	0	0	

G 17   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1099	0	0	

R 18   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	18
       0	*	*	*	*	*	*	1099	0	0	

T 19   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	19
       0	*	*	*	*	*	*	1099	0	0	

F 20   *	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1099	0	0	

Q 21   *	*	*	*	*	*	1000	*	*	*	*	*	*	1000	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1099	0	0	

Y 22   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	22
       0	*	*	*	*	*	*	1099	0	0	

V 23   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	23
       0	*	*	*	*	*	*	1099	0	0	

K 24   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1099	0	0	

D 25   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1099	0	0	

W 26   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	26
       0	*	*	*	*	*	*	1099	0	0	

I 27   *	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	0	*	*	*	1099	0	0	

//