HHsearch 1.5 NAME c4r7rA_ FAM FILE c4r7rA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4r7rA_.a3m DATE Sat Sep 13 08:16:11 2014 LENG 122 match states, 122 columns in multiple alignment FILT 12 out of 16 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.2 EVD 0.4072 -1.1661 SEQ >ss_dssp CCCCSCHHHHHHHHHTCCCEEEEEETTTCCEEECCTTTTTHHHHHHHHCCGGGEECCCCCCSSCSEEEEEECSSCEEEEEECGGGEEEEEETTCCSSCEE EECTTSCGGGCHHHHHHHHHHC >sa_dssp EEEDDCDBBEDADEDBEECEACACCBEEEDECEBDEEBCEBACCBBECCEEEABCEEDEDEEDBDBCACACBEEDCBBAAABDECCAAABBEEDEECCAB ACAEDBDEECCACDBADDBCEE >ss_pred CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCEEEEEECCCCCCEEE EECCCCCCCCCHHHHHHHHHCC >ss_conf 9763102689998403761799997431102113702579999999861124333300024687169999982887999971686799961388663112 2303785314587788775239 >Consensus kKPxnxYYTnlLxxxxxxxkxxixDtNxykexxvxxexxxiIxxflxsLkkxNfixexxxxxkPxYkifxxFxxxKyvIxVYNxxyisiyPWDGxyxxDy IsxxxiPxsyNlyxxCxxifnK >c4r7rA_ AKPSLNYHTKNLSELVSNIKIRLLDXNIYSEVIVDNEDVRIIDDLLKSLKDSNFINEEALPNKPLYKIFIDLNSEKYVIDIYGDDLITLYPWDSDVRKDY LSLKDIPNSFKLEPFCQYVFNK >UniRef50_C1I5A2(32-153:162) Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I5A2_9CLOT E=3e-21 s/c=0.84 id=32% cov=98% SKPSNNYYTNEIQEKLNNkesYTIKIFDLNVYKYYSVNEDEHSILPEFIESLNNENYGAEIEKELTPEYKLIIEFSNAKYIINAYNDKLISIHPWDGVYE EDIISMEGVSDYYNLYKFCEYI--- >UniRef50_C6PUS3(1-157:157) Putative uncharacterized protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PUS3_9CLOT E=2e-17 s/c=0.56 id=39% cov=100% NKPNNFYYTNLLAKdltLETSYKCIAVDTNLSKEKEIDGENKLIFKNMLKSLNKNNFIAKpKELPDKPAYKIFFTFNKEKMVISVYNEKFISIYPWDGNY DMDYIDMNGVPVSLNLYSLCKFIFN- >UniRef50_B1KXR0(1-158:158) Putative lipoprotein n=10 Tax=Clostridium RepID=B1KXR0_CLOBM E=8e-16 s/c=0.53 id=33% cov=101% GKKSNNFYYTNLlaknMTLEKEYKVTILETNFYKGLEINKKDKELIKHFITLLKKENFKTlEKKSESKPLYKIFFTFEKDKYIINVYNKQYISVYPFDGN FPMDYIDMSNIPEAYNLYNLCNFLFNK >UniRef50_Q97K28(13-160:163) Hypothetical secreted protein n=1 Tax=Clostridium acetobutylicum RepID=Q97K28_CLOAB E=2e-27 s/c=1.11 id=36% cov=98% KKPFNFYYTNLLAKsfvKEKALKFSLIDTSYYKNHNLTATEIDTIRDFLVHLKKHNYINKPsKLPAKPMYRLFLTFSNSKFVIDVYDENYAAVYPWDGYY PKDFLNIKDIPPSCNPYNFCTYI--- >UniRef50_A6LTA9(1-156:160) Putative uncharacterized protein n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LTA9_CLOB8 E=5e-27 s/c=1.01 id=28% cov=101% VKPSNHYYIDEIKSKIlnnQNFTLYVFDTNLYKEIEVPSEENSIIEDFVSALTTVNYSDESVDAKEPFRIKILFEDNSQYLFRIFNDSTISVSPWDGNYK EDIISIKDLPLRYNPFDFCNHIANK >UniRef50_A0PZE2(1-157:162) Conserved protein n=3 Tax=Clostridium RepID=A0PZE2_CLONN E=3e-25 s/c=1.05 id=37% cov=101% KKPNNFYYTNLLAKNLNidqKKQVKVLDTNYYKTQDVSNEDIQIIFSFLKELKKPNFVTpSSSFDEKPSYKIFFSFpeSSKKYVMNVYNHEYLSVQPWDG DFSMDYISTINIPYRFSIYNVCKNAFFK >UniRef50_Q896I8(1-155:158) Conserved protein n=1 Tax=Clostridium tetani RepID=Q896I8_CLOTE E=2e-23 s/c=1.11 id=30% cov=98% KNKELNHYTNKLIENINsqpNYQCLIVDTNFYREENLQKEHLSIIKNFLNNINKNSFIlyDEKKVPKNPPYKMFLIFHNEKFVINVYNENYVSIHSWDGY HKMDYINTSSIPYSYNLYNLCNFL--- >UniRef50_B2TP72(32-157:161) Putative lipoprotein n=5 Tax=Clostridium RepID=B2TP72_CLOBB E=2e-20 s/c=1.26 id=28% cov=101% KKPNNHYYTDLLTNKVLNNEdfsLYVFDKNLYKEIKVNDDEEVMVENFLNSLITDNYLNNSDLiNEREPFRIKVVFKDNIFLIKVFNSNLITLSPWDGNY AEDIISMENLPIGYNLFNFCVHIESK >UniRef50_C5RFQ4(29-153:156) Putative uncharacterized protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RFQ4_CLOCL E=6e-19 s/c=1.32 id=34% cov=99% KKPSCNYYTNLFIQNMNTNKIKsisVYETNYSKDKVLNTELYYIIKNLFDSLKKENFLDEPMYtPENPVYRYYITFSNDKtFVIDVYNENYLTLYPWDGK YQKDFIDISNAPKSYNLHGLSKYLF-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 3235 * * * * 3838 * * 894 * * 3634 * * * 3383 * 3193 * * 1 0 * * * * * * 3147 0 0 K 2 * * * * * * * * 135 * * 3486 * * * * * * * * 2 0 * * * * * * 3184 0 0 P 3 * * * * * * * * 2694 * * * 340 * * 4168 * * * * 3 0 * * * * * * 3184 0 0 S 4 * * * 3486 3564 * * * * * * 1381 * * * 1177 * * * * 4 0 * * * * * * 3184 0 0 L 5 * 3612 * * * * * * * 2399 * 457 * * * * * * * * 5 0 * * * * * * 3184 0 0 N 6 * * * * 1437 * 2301 * * * * 1225 * * * * * * * * 6 0 * * * * * * 3184 0 0 Y 7 * * * * 3939 * 3486 * * * * * * * * * * * * 242 7 0 * * * * * * 3184 0 0 H 8 * * * * * * 3318 * * * * * * * * * * * * 152 8 0 * * * * * * 3184 0 0 T 9 * * * * * * * 3267 * * * * * * * * 267 * * 3939 9 0 * * * * * * 3184 0 0 K 10 * * 2301 * * * * * 3318 * * 663 * * * * 3939 * * * 10 0 * * * * * * 3184 0 0 N 11 * * * 2358 * * * * 3486 862 * 2595 * * * * * * * * 11 0 * * * * * * 3184 0 0 L 12 * * * * 3612 * * 2358 * 468 * * * * * * * * * * 12 97 3939 * 2000 415 * * 3184 1000 0 S 13 1437 * * * * * * 2548 3267 * 3939 * * 3455 * 3318 3336 * * * 13 0 * * * * * * 3184 0 0 E 14 * * * 1833 * * * * 1437 * * 3336 * 3612 * 3267 3939 * * * 14 239 2711 * 1585 585 * * 3184 1490 0 L 15 * * * * * * * * 1401 2097 * 1367 * * * * * * * * 15 0 * * * * * * 3184 0 0 V 16 * * * 2198 * * * 2372 * 1988 2863 * * * * * * 2327 * * 16 385 2095 * 1585 585 * * 3184 1991 0 S 17 * * * * * * * * 2284 3336 * 1520 * 3267 * 2516 3873 * * * 17 279 2509 * 1585 585 * * 3184 1530 0 N 18 3564 * * 3049 * * * * 3533 * * 1048 3745 * * 3873 3612 * * * 18 138 3455 * 1585 585 * * 3184 1000 0 I 19 * * * * 3267 * * 3318 3533 2652 * 2468 * * * * * * * 1436 19 0 * * * * * * 3184 0 0 K 20 * * * 3336 * * * * 915 * * * * 2509 * * 2358 * * * 20 150 3336 * 1585 585 * * 3184 1000 0 I 21 * 2107 * * 3564 * * 1872 * 2301 * * * * * * * 2271 * * 21 0 * * * * * * 3184 0 0 R 22 * * * * * * * 3873 1947 3486 * * * * 3318 3564 2355 * * 2301 22 123 3612 * 1585 585 * * 3184 1000 0 L 23 3873 * * * * * * 1731 * 2436 3745 * * * * * * 1430 * * 23 0 * * * * * * 3184 0 0 L 24 * * * 3745 1766 * * 3564 * 1701 * * * * * * * 2667 * 3612 24 0 * * * * * * 3184 0 0 D 25 * * 468 1851 * * * * * * * * * * * * * * * * 25 0 * * * * * * 3184 0 0 X 26 * * * * * * * * 3209 3310 * 3605 * * * * 496 * * * 26 0 * * * * * * 3048 0 0 N 27 * * * * * * * * * * * 127 * * * 3564 * * * * 27 0 * * * * * * 3184 0 0 I 28 * * * * 1812 * * 3318 * 1883 * * * * * * * 3455 * 1984 28 0 * * * * * * 3184 0 0 Y 29 * * * * * * 3745 * * * * * * * * 2737 * * * 367 29 0 * * * * * * 3184 0 0 S 30 * * 3745 * * * * * 442 * * * * * 3486 3318 * * * * 30 0 * * * * * * 3184 0 0 E 31 * * 3612 902 * 3049 * * * * * 3564 * * * * 3533 * * 3455 31 0 * * * * * * 3184 0 0 V 32 * * * 3486 * * 3564 1849 2737 3049 * * * 3533 * * * 3318 * 3455 32 0 * * * * * * 3184 0 0 I 33 * * 3533 1771 * * * 3318 3336 * * 2009 * * * 3455 * 3612 * * 33 0 * * * * * * 3184 0 0 V 34 * * * * * * * 2403 * 1599 * * * * * * * 1057 * * 34 0 * * * * * * 3184 0 0 D 35 * * 2040 * * * * * * * * 1348 3267 3486 * 3533 3564 * * * 35 0 * * * * * * 3184 0 0 N 36 3564 * 3336 3455 * 3873 * * 1812 * * 2421 * * * 3267 3612 * * * 36 0 * * * * * * 3184 0 0 E 37 * * 1917 916 * * * * 3049 * * * * * * * 3564 * * * 37 0 * * * * * * 3184 0 0 D 38 * * 1701 1401 * * 3486 * * 3612 * 2808 * * * * * * * * 38 0 * * * * * * 3184 0 0 V 39 * * * 3336 * * 3455 2026 2403 3486 * 3267 * * * * * 3318 * 3612 39 0 * * * * * * 3184 0 0 R 40 * * 3564 3049 * * * * * 3873 * * * 3533 3318 1814 * 2526 * 3612 40 0 * * * * * * 3184 0 0 I 41 * * 3745 * * * * 687 * 3049 3336 * * * * * 3564 * * * 41 0 * * * * * * 3184 0 0 I 42 * * * * 3873 * * 431 * 3455 * * * * * * * 3336 * * 42 0 * * * * * * 3184 0 0 D 43 * * 3318 2301 3533 * * * 1202 * * * 3455 * 3564 * * * * * 43 0 * * * * * * 3184 0 0 D 44 * * 1792 3455 * * 3049 * * * * 1276 * * * 3533 * * * * 44 0 * * * * * * 3184 0 0 L 45 * * * * 567 * * * * 2458 2808 * * * * * * * * * 45 0 * * * * * * 3184 0 0 L 46 * * * * 3612 * * 2238 * 731 * * * * * * * 3267 * * 46 0 * * * * * * 3184 0 0 K 47 * * 3612 3455 * * * * 1972 * * 2409 * * * 2486 3049 3564 * * 47 0 * * * * * * 3184 0 0 S 48 3267 * * 3533 * * 3564 * * 3049 * 3486 * * * 957 * * * * 48 0 * * * * * * 3184 0 0 L 49 * * * * * * * 3486 * 135 * * * * * * * * * * 49 0 * * * * * * 3184 0 0 K 50 * * * * * * * 3336 867 * * 2008 * * * * 3267 * * * 50 0 * * * * * * 3184 0 0 D 51 * * 3318 * * * * * 723 * * 3455 * * * * 2301 * * * 51 0 * * * * * * 3184 0 0 S 52 * * 3336 1767 * * 3564 * 3745 * * 2667 3533 * * 3318 * 3267 * * 52 0 * * * * * * 3184 0 0 N 53 * * * * * * * * * * * 135 * * * 3486 * * * * 53 0 * * * * * * 3184 0 0 F 54 * * * * 686 * * * * * * * * * * * * * * 1401 54 0 * * * * * * 3184 0 0 I 55 * * * * * 3455 * 1262 3049 2468 * * * * * 3267 * 3533 * * 55 135 3486 * 1000 1000 * * 3184 1000 0 N 56 2649 * 1863 * * * * * * * * 1817 * * * 3745 2271 * * * 56 335 2271 * 0 * * * 3184 1480 0 E 57 * * * 768 * * * * 2137 * * 3336 * * * 3533 * * * * 57 102 3873 * 0 * * * 3184 1000 0 E 58 * * * 3318 * * * 3455 1845 * * * 2054 * * 1789 * * * * 58 127 3564 * 0 * * * 3184 1000 0 A 59 3318 * 3336 2649 * * * * 1437 * 3612 * * * * 3533 * 3267 * * 59 112 3745 * 0 * * * 3184 1000 0 L 60 * * 3267 * 3533 * * * 3455 1229 * * * * * 3049 * 3486 * 3612 60 288 2468 * 0 * * * 3184 1589 0 P 61 3267 * 3533 2238 * * * * * * * 3336 1004 * * * * * * * 61 0 * * * * * * 3184 0 0 N 62 3564 * 3873 1549 * * * * 2372 3455 * 3318 * * * 3049 * * * * 62 0 * * * * * * 3184 0 0 K 63 * * * 3267 * * * * 903 * * 2548 * * 3336 * 3455 * * * 63 0 * * * * * * 3184 0 0 P 64 * * * 3336 * * * * * * * * 275 * * 3745 * * * * 64 0 * * * * * * 3184 0 0 L 65 2808 * * 3455 3267 * * * * 2177 3564 * 2409 * * 3533 * 3612 * * 65 0 * * * * * * 3184 0 0 Y 66 * * * * 3336 * * * * * * * * * 3267 * * * * 327 66 0 * * * * * * 3184 0 0 K 67 * * * * * * * 3267 846 * * * * * 1557 * * * * * 67 0 * * * * * * 3184 0 0 I 68 * * * * * * * 864 3267 2509 3486 * * * * * * * * 3612 68 0 * * * * * * 3184 0 0 F 69 * * * * 864 * * 2358 3336 * * * * * * * 3745 * * 3612 69 0 * * * * * * 3184 0 0 I 70 * * * * 1514 * * 1872 * 1848 * * * * * * * 3336 * * 70 0 * * * * * * 3184 0 0 D 71 * * 3318 3455 3267 * * 3486 * * * * * * * 3533 1218 3336 * * 71 0 * * * * * * 3184 0 0 L 72 * * * 3267 329 * * * * 3318 * * * * * * * * * * 72 130 3533 * 1000 1000 * * 3184 1000 0 N 73 * * 2486 3049 * * 3486 * 3336 * * 2569 * * * 1540 * * * * 73 0 * * * * * * 3184 0 0 S 74 * * 3336 * * * * * 1923 * * 1150 * * * 2421 * * * * 74 0 * * * * * * 3184 0 0 E 75 3455 * 2303 1589 * * * * 3533 * * 3336 * * * 2408 * * * * 75 0 * * * * * * 3184 0 0 K 76 * * * * * * * 3336 327 * * * * 3267 * * * * * * 76 123 3612 * 0 * * * 3184 1000 0 Y 77 * * * * 1496 * * * * 3745 3873 * * * * * * * * 993 77 0 * * * * * * 3184 0 0 V 78 * * * * * * * 2238 * 1849 * * * * * * * 970 * * 78 0 * * * * * * 3184 0 0 I 79 * * * * 3267 * * 305 * * 3533 * * * * * * * * * 79 0 * * * * * * 3184 0 0 D 80 * * 1551 * * * * * 3336 * * 1367 * * 3267 3873 * * * * 80 0 * * * * * * 3184 0 0 I 81 3455 * * * * * * 1843 * * * * * * * * * 666 * * 81 0 * * * * * * 3184 0 0 Y 82 * * * * 2301 * * * * * * * * * * * * * * 327 82 0 * * * * * * 3184 0 0 G 83 * * 3564 * * 3318 * * * * * 295 * * * * * * * * 83 0 * * * * * * 3184 0 0 D 84 * * 1760 1328 * * 3533 * 3049 * * * * * * 3336 * * * * 84 0 * * * * * * 3184 0 0 D 85 * * 3318 3533 * * * * 2095 * * 1496 * 3049 * 3267 * * * * 85 0 * * * * * * 3184 0 0 L 86 * * * * 3873 * * * * 1784 * * * * * * 3267 * * 896 86 0 * * * * * * 3184 0 0 I 87 3564 * * * * * * 777 * 2572 * * * * * * * 2609 * * 87 0 * * * * * * 3184 0 0 T 88 3564 3745 * * * * * * * * * * * * * 837 1831 * * * 88 0 * * * * * * 3184 0 0 L 89 * * * * * * * 1629 * 1831 * * * * * * * 1337 * * 89 0 * * * * * * 3184 0 0 Y 90 * * * * * * 2470 * * * * * * 3533 * 2301 * * * 915 90 0 * * * * * * 3184 0 0 P 91 * * * * * * * * * * * * 135 * * 3486 * * * * 91 0 * * * * * * 3184 0 0 W 92 * * * * 3049 * * * * * * * * * * * * * 186 * 92 0 * * * * * * 3184 0 0 D 93 * * 0 * * * * * * * * * * * * * * * * * 93 0 * * * * * * 3184 0 0 S 94 * * * * * 152 * * * * * * * * * 3318 * * * * 94 0 * * * * * * 3184 0 0 D 95 * * 2421 * * * * * 2677 * * 1351 * * * * * 3455 * 2524 95 0 * * * * * * 3184 0 0 V 96 * * * * 2271 * 3486 * * * * * * * * * * 3318 * 729 96 0 * * * * * * 3184 0 0 R 97 3336 * 3873 3455 * * * * 2372 * * * 2284 3612 3318 2635 * * * * 97 0 * * * * * * 3184 0 0 K 98 * * * 1766 * * * * 1907 * 1187 * * * * * * * * * 98 0 * * * * * * 3184 0 0 D 99 * * 0 * * * * * * * * * * * * * * * * * 99 0 * * * * * * 3184 0 0 Y 100 * * * * 2588 * * 1766 * * * * * * * * * * * 890 100 0 * * * * * * 3184 0 0 L 101 * * * * * * * 295 * 2436 * * * * * * * * * * 101 0 * * * * * * 3184 0 0 S 102 * * 1533 * * * * * * * * 2524 * * * 1057 * * * * 102 0 * * * * * * 3184 0 0 L 103 * * * * * * * 1536 * 3318 1399 * * * * * 2509 * * * 103 0 * * * * * * 3184 0 0 K 104 * * * 2395 * * * 3533 1792 * * 3873 * * * 1448 * * * * 104 0 * * * * * * 3184 0 0 D 105 * * 1461 * * 2649 * * * * * 1366 * * * 3486 * * * * 105 0 * * * * * * 3184 0 0 I 106 3612 * * * * * * 847 * 2301 * * * * * * * 2649 * * 106 0 * * * * * * 3184 0 0 P 107 * * * * * * * * * * * * 138 * * 3455 * * * * 107 0 * * * * * * 3184 0 0 N 108 * * 3455 3049 * * * 3336 3612 3267 * 3318 3564 * * * * 2808 * 2509 108 0 * * * * * * 3184 0 0 S 109 3049 * * * * 3336 * * * * * * * * 2394 1004 * * * 3455 109 0 * * * * * * 3184 0 0 F 110 * 3564 * * 2421 * * * * 2808 * * * * * * * * * 771 110 0 * * * * * * 3184 0 0 K 111 * * * * * * * * 3318 * * 298 * * * 3533 * * * * 111 0 * * * * * * 3184 0 0 L 112 * * * * * * * 3533 * 464 * * 2408 * * * * * * * 112 0 * * * * * * 3184 0 0 E 113 * * * 3318 2301 * 3612 * * * * * * * * * * * * 701 113 0 * * * * * * 3184 0 0 P 114 * * 3267 * * 3612 * * 3455 * * 1059 3318 * * 3873 * * * 3745 114 0 * * * * * * 3184 0 0 F 115 * * * * 1062 * * * * 1202 * * * * * * * 3533 * * 115 0 * * * * * * 3184 0 0 C 116 * 245 * * * 3745 * * * * * * * * * 3612 * * * * 116 0 * * * * * * 3184 0 0 Q 117 * * * 3455 * * * * 1685 * * 1671 * 3318 * * 3564 3336 * * 117 0 * * * * * * 3184 0 0 Y 118 * * * * 1845 * 2301 * * * * 3533 * * * * * * * 1210 118 0 * * * * * * 3184 0 0 V 119 3533 * * * * * * 1162 * 1448 * * * * * * * 3318 * * 119 0 * * * * * * 3184 0 0 F 120 2795 * * 2935 464 * * * * * * * * * * * * * * * 120 0 * * * * * * 2893 0 0 N 121 * * * * 2783 * * * * * * 536 * * * 2600 * * * * 121 0 * * * * * * 2705 0 0 K 122 * * * * * * * * 0 * * * * * * * * * * * 122 0 * * 0 * * * 2559 0 0 //