HHsearch 1.5 NAME c4qiwH_ FAM FILE c4qiwH_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4qiwH_.a3m DATE Sat Oct 11 08:30:04 2014 LENG 76 match states, 76 columns in multiple alignment FILT 75 out of 79 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4051 0.4808 SEQ >ss_dssp CCCCSSCSSCCEEECCCHHHHHHHHHHTTCCGGGSCCEETTCHHHHHHTCCTTCEEEEEEEETTTEEEEEEEEEEC >sa_dssp EEEEEDEEECCDCDDBDEEDCEECCEEEEDEEEEBDDBECEDEDBEEDDBEEDCBABBCDECEEEDEDECCCCBCE >ss_pred CCCCCCCEECCCEEECCHHHHHHHHHHHCCCHHHCCCHHCCCHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEEC >ss_conf 9766445130641356999999999981999788961115485473228857878999977988676089999979 >Consensus xxNitxHxlVPkHxiLsxeEkxxlLxxyxixxxqLPkIxxsDPiaxyxGxkxGdvvkIxRxsxtaGxxvxYRxVix >c4qiwH_ EFNIFDHVLVPEHRILSEEEKEELLKKYRIRISQLPQIKASDPAVVALGAKPGDVIEIKRKSPTAGYYYYYRLVVE >UniRef50_Q98RN7(142-214:214) RNA polymerase I, II and III 24.3 kDa subunit n=2 Tax=Cryptophyta RepID=Q98RN7_GUITH E=6e-10 s/c=0.89 id=39% cov=97% --NITHHMLVPKHEILSKNESKSLLERYSIKFDHLPKILKNDPVAKYLGLQRSEIVKITRVSETSGKFITYRICI- >UniRef50_D2TF49(135-210:214) Putative DNA-directed RNA polymerase subunit n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TF49_9VIRU E=6e-12 s/c=0.95 id=35% cov=97% -YNITKHILVKPHTYIDKEQADVIINSFAAKPEHFPMMLSTDPMAVFCHYKIGDLIEIDRSSlggVTEG-GITYRLVV- >UniRef50_D1IP46(658-730:731) Whole genome shotgun sequence of line PN40024, scaffold_139.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1IP46_VITVI E=2e-23 s/c=1.51 id=35% cov=97% -INITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCV-- >UniRef50_Q5UPX7(133-205:205) DNA-directed RNA polymerase subunit 5 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO5_MIMIV E=4e-15 s/c=1.13 id=32% cov=97% --DLLSNEFQPRFQLLSPSEMESVKTEYNANPYTLKKIVRSDPIVRYFALKKNDIIRIIRPSATSGQGIDYRVVV- >UniRef50_C9ZZV0(226-299:299) DNA-directed RNA polymerase II, putative n=3 Tax=Trypanosoma brucei RepID=C9ZZV0_TRYBG E=2e-18 s/c=1.26 id=33% cov=99% -YNISRHQSVPKHVPMTDVEVRAFLEQRKLMITQLPRILNDDPMVEYLDLPRGSIIRIERRTDEGSTYEMYRHVI- >UniRef50_D2XB19(121-190:193) RNAP subunit Rpb5 n=1 Tax=Marseillevirus RepID=D2XB19_9VIRU E=8e-17 s/c=1.26 id=40% cov=92% -----DHVDVPPHKKLSEKKKRETLEKYGVELDKCPKILKDDPVVKWYGWSCGDLIKILQPGEgNFGPSVNYRVV-- >UniRef50_Q65224(128-200:205) Putative DNA-directed RNA polymerase subunit 5 homolog n=7 Tax=African swine fever virus RepID=RPB5_ASFM2 E=1e-15 s/c=1.15 id=38% cov=97% -INIPKVSAIPKHKLITQEEAQEFLGREYLQPQDLMQISASDPPVVWLGGRPGDFVQIERPSETAMHAVVIRFI-- >UniRef50_C7DHC7(22-85:87) RNA polymerase Rpb5 n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHC7_9EURY E=3e-11 s/c=1.09 id=40% cov=86% -----------KHELVDAAEAKKIAKKYGISLEKFPKILKSDPQAVKLNAQPGQLIAIHRNDMT-GKYIYYRYVID >UniRef50_A9TSN3(107-173:448) Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TSN3_PHYPA E=1e-09 s/c=0.96 id=34% cov=89% -FHPTSNVLVPKYSIALSSELLE-MKEKGISHDSLPKIYAEDRICEWYGFKR-DVLLVERH---VGDYQWYKH--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 3750 * * * * 945 * * * * 2043 2612 * * * * * 1 0 * * * * * * 2774 0 0 F 2 * * * * 1366 * * 1724 * 4917 4221 * 5504 * * * * * * 2318 2 0 * * * * * * 4023 0 0 N 3 5791 * 3002 * * * 5219 * 6138 * * 354 * * 6129 5696 * * * * 3 0 * * * * * * 4108 0 0 I 4 * * * * * * * 958 5853 3349 * * 3311 * * * * 1894 * * 4 0 * * * * * * 4272 0 0 F 5 5903 * * * 4519 * 6234 5688 5564 2844 5859 * 4298 4866 * 3888 840 5779 * * 5 0 * * * * * * 4280 0 0 D 6 * * 3037 3351 * 4472 3620 * 1364 5989 6385 4311 * 5225 3820 3481 * * * * 6 0 * * * * * * 4328 0 0 H 7 * * * 4940 * * 260 * * * * 3784 * * * * * 4822 * 5370 7 0 * * * * * * 4328 0 0 V 8 * * * 1777 4615 * 4736 3221 5600 4967 4770 5198 * 4336 5247 4341 * 1831 * * 8 0 * * * * * * 4332 0 0 L 9 4431 * 4739 * 4268 * * 6169 * 534 4957 * * 5391 * 4519 4935 * 5996 6433 9 0 * * * * * * 4332 0 0 V 10 * * * * * * * 4415 4175 * * * * 3280 * * * 331 * * 10 0 * * * * * * 4335 0 0 P 11 * * * * * * * * 4750 * * 5620 133 * * 5017 * * * * 11 0 * * * * * * 4335 0 0 E 12 * * 6028 2632 * * 4717 * 968 5426 * * 4090 3584 3705 * 5391 6933 * * 12 0 * * * * * * 4350 0 0 H 13 * * * * 4349 * 318 5400 5190 * 6246 * * * * * * 6095 * 3841 13 16 6509 * 0 * * * 4350 1000 0 R 14 * 5456 6246 1817 7076 * 6141 3995 3578 6973 * 4303 * 3629 4436 5584 3162 2526 * 5622 14 0 * * * * * * 4350 0 0 I 15 5052 * * * * * * 1711 3594 2598 * * 4019 5982 6109 5190 * 1864 * 5482 15 0 * * * * * * 4350 0 0 L 16 4518 * 6509 * * * * 3150 * 575 3237 * * 7076 * * * 4387 * * 16 0 * * * * * * 4350 0 0 S 17 5812 * 2660 5982 * * * * 5570 4503 * 3676 4239 * * 1546 1909 * * 8303 17 0 * * * * * * 4350 0 0 E 18 3500 * 2779 2451 * * 6973 6085 2796 5190 * 5003 2681 4887 3939 4057 6214 5095 * * 18 0 * * * * * * 4350 0 0 E 19 4765 * 3704 968 * * * 6282 4335 5190 5951 4719 7185 4574 6828 3260 4700 5025 * * 19 0 * * * * * * 4350 0 0 E 20 4985 * 5144 340 * * * 5812 5405 * * * * 3895 * * 6125 5190 * * 20 0 * * * * * * 4350 0 0 K 21 2188 * * 5126 * * 6936 4663 1084 3453 5276 * * * 6293 6247 * 3481 * * 21 0 * * * * * * 4350 0 0 E 22 4313 * 4087 2555 * * 5190 5156 2124 5584 7006 4179 5961 2613 3507 5218 5554 4778 * * 22 0 * * * * * * 4350 0 0 E 23 3723 * 4949 1516 * 5141 * * 2456 4528 * 4706 * 3606 5051 3936 4889 4697 * * 23 64 * 4518 * * * * 4350 0 0 L 24 * * * 5946 2962 * * 3062 6078 1026 5962 * * * * * 5369 2400 * * 24 0 * * * * 0 * 4254 0 1096 L 25 6389 * * * 4381 * * 4032 4349 510 3843 * * 5611 * * * 4730 * * 25 0 * * * * * * 4350 0 0 K 26 4292 * 3700 2607 * 4887 6778 * 1676 6112 6379 3048 * 4349 3788 6330 3818 * * * 26 40 5190 * 3170 170 * * 4350 1000 0 K 27 4826 6488 4845 2393 * * 6269 6803 1615 6944 * 6085 * 4414 2174 4638 4370 * * * 27 0 * * * * * * 4350 0 0 Y 28 * * * 4372 4337 * 4353 * 4127 2940 5321 * * * 4273 * * * 5965 803 28 34 5408 * 3170 170 * * 4350 1000 0 R 29 3908 6556 4102 5455 * 2506 6156 * 2049 6110 * 2823 * 5436 3077 4254 5243 * * 4887 29 41 6110 6193 0 * * * 4350 1000 0 I 30 4345 4127 * * * * * 1618 * 1692 6369 * * * * 6416 6192 2263 * 6323 30 18 6361 * 0 * 0 * 4326 1000 1000 R 31 * * 4328 2315 * 5523 * 5408 2011 * 5129 3902 6193 4208 4079 2879 3939 4945 * * 31 0 * * * * * * 4350 0 0 I 32 5262 * 2543 2282 5227 * 4515 4374 4083 2543 * * 2859 * 4298 * * 4088 * * 32 0 * * * * * * 4350 0 0 S 33 4267 * 2426 3034 * 5110 6816 * 3522 * * 4245 * 3489 6376 2710 2814 5283 6090 5276 33 0 * * * * * * 4350 0 0 Q 34 * * 3157 4793 6136 * 3583 * 3580 6193 5965 * * 967 6556 3894 5276 6212 * 6380 34 0 * * * * * * 4350 0 0 L 35 * 5405 * * 3194 * * 5075 * 299 5332 * * * * * * * * * 35 0 * * * * * * 4350 0 0 P 36 * * * * * * * * 5276 * 4475 * 106 * * * * * * * 36 0 * * * * * * 4350 0 0 Q 37 * * * * * * 5909 4601 1465 3730 5481 * * 3954 1571 5408 * * 4885 5397 37 0 * * * * * * 4350 0 0 I 38 * * * * * * * 423 * 3708 2493 * * * * * * * * * 38 0 * * * * * * 4350 0 0 K 39 * * * 5950 5299 * 4293 * 2939 1304 6532 * * 2811 5454 3637 * 5276 * 3481 39 0 * * * * * * 4350 0 0 A 40 2919 * 5319 3215 * * 6027 4712 2585 5798 * 5671 5331 4640 3594 3082 4421 2733 * 6123 40 0 * * * * * * 4350 0 0 S 41 7031 * 2973 3755 * 6015 * * 4044 * * 3588 * 6452 6193 1495 2041 6804 * * 41 0 * * * * * * 4350 0 0 D 42 * * 0 * * * * * * * * * * * * * * * * * 42 0 * * * * * * 4350 0 0 P 43 3387 * * * * * * * * * * * 321 * 4515 5397 6816 5184 * * 43 21 * 6123 * * * * 4350 0 0 A 44 3261 * * * 5389 * * 1586 * 3867 3505 * 4883 4642 * * * 1698 * * 44 21 * 6099 * * 0 * 4336 0 1000 V 45 1021 4197 * * * * * 3779 * * 6188 * * * * 4137 6265 1870 * 5450 45 0 * * * * 0 * 4349 0 1000 V 46 4992 * * 4205 * * 5609 6156 2295 3761 * 6357 * 3950 1399 5909 * 2949 * * 46 0 * * * * * * 4350 0 0 A 47 3196 * * 3601 3804 5406 6380 * 4209 * * * 5285 * 6193 * * * 3125 1019 47 0 * * * * * * 4350 0 0 L 48 6090 4728 5285 * 3174 * * 3547 * 1377 * * * 5609 * * * 5957 * 1719 48 0 * * * * * * 4350 0 0 G 49 5276 * 4049 5044 * 460 5481 * 4549 * * 3927 * * * 5294 * * * * 49 37 5294 * 2585 263 * * 4350 1123 0 A 50 1571 * * * 3389 4887 * 4963 * 1394 6928 * 6380 * * * * 4970 5405 4444 50 21 6136 * 2322 322 * * 4350 1000 0 K 51 6020 * 5414 2909 * * 6383 * 977 5950 * * 5671 2914 3458 4941 5957 * * * 51 0 * * * * * * 4350 0 0 P 52 * 5405 * 4844 * * 6383 4379 2624 6084 * * 1642 4910 1897 4748 6272 4949 * * 52 65 * 4515 * * * * 4350 0 0 G 53 * * * * * 172 * * 4691 * * 4049 * * * 6212 * * * * 53 0 * * * * 0 * 4255 0 1096 D 54 5645 * 1051 4561 * * * * * * * 4908 * 1826 5965 3695 4427 * * * 54 0 * * * * * * 4350 0 0 V 55 * * * * 4550 * * 2419 * 2791 4144 * * * * * * 813 * * 55 0 * * * * * * 4350 0 0 I 56 * * * * 5016 * * 1635 * 3422 6532 * 5455 * * * * 943 * * 56 0 * * * * * * 4350 0 0 E 57 4664 * * 3140 * * 5906 * 810 4482 5280 * * 4843 2694 * * * * * 57 0 * * * * * * 4336 0 0 I 58 * * * * * * * 155 * * * * * * * * * 3294 * * 58 0 * * * * * * 4336 0 0 K 59 * * 5494 2755 * * 4190 2179 5604 5423 * * * * 5631 4432 1713 2999 * 6210 59 0 * * * * * * 4336 0 0 R 60 * * * * * * 5907 * * * * 5420 * 5423 263 * * * * 3278 60 11 7040 * 0 * * * 4336 1000 0 K 61 5507 * 3134 4258 5769 * 4482 6981 1962 6205 5961 3562 2929 5469 4013 2977 6162 6250 * * 61 51 * 4838 * * * * 4336 0 0 S 62 * * 3541 * * 2730 * * 5359 * * 5584 * * * 553 4769 * * * 62 83 5447 4936 1585 585 * 0 4306 1000 1570 P 63 3947 * 5139 1341 * 3970 * * 3896 6639 4298 * 2579 4183 4099 * * 4664 * * 63 74 5363 5297 0 * * 0 4230 1000 1612 T 64 * * * 4717 * * * 5193 * 4394 5075 4031 5267 5790 * 4208 518 * * * 64 64 * 4524 * * 2276 334 4193 0 2082 A 65 941 6324 * 5245 4510 5588 * 5685 * * 5995 * * * * 2793 3442 3263 * * 65 0 * * * * 745 1310 4197 0 2331 G 66 * * 3986 5954 * 298 * * 6336 5595 4791 5807 * * * 5626 * * * * 66 35 * 5370 * * 1046 956 4297 0 1593 Y 67 * * 3436 2152 5887 * 3802 5869 2657 4998 * 5583 4115 4582 2804 4213 4930 5157 * 6830 67 0 * * * * 0 * 4256 0 1571 Y 68 3000 * * * 3779 3770 4446 * * 4265 * * * * 6400 2787 4227 5186 * 1346 68 0 * * * * * * 4336 0 0 Y 69 4754 * * 4841 6173 * * 1933 6025 3850 * * * 4482 * 5906 4396 1217 * 5128 69 0 * * * * * * 4336 0 0 Y 70 4668 * 5254 * 4829 * * * * * 3874 5423 * * * 2999 1581 3102 4482 2417 70 0 * * * * * * 4336 0 0 Y 71 * * * * 4197 * * 4843 * * * * * * * * * * * 135 71 0 * * * * * * 4336 0 0 R 72 * * * * * * * * 4099 * * * * * 87 * * * * * 72 0 * * * * * * 4336 0 0 L 73 7005 3062 * * 4184 * 3626 2645 * 2114 * * * 4629 * * * 2779 7281 2708 73 0 * * * * * * 4336 0 0 V 74 4889 3338 * * * * * 3249 * * * * * * * * * 392 * * 74 0 * * * * * * 4274 0 0 V 75 5565 * * 4991 * * * 1206 5270 * 3927 * * * * * * 1243 * * 75 0 * * * * * * 3956 0 0 E 76 * * 1161 1016 * * * * 4098 * * * * * * * * * * * 76 0 * * 0 * * * 2950 0 0 //