HHsearch 1.5 NAME c4qhfA_ FAM FILE c4qhfA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4qhfA_.a3m DATE Sat Jul 19 11:46:08 2014 LENG 109 match states, 109 columns in multiple alignment FILT 112 out of 267 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.4 EVD 0.4320 0.1811 SEQ >ss_dssp CCCHHHHHHHHHHHHHHTTCGGGTTTCEEEEECCSSCSEEEETTTTEEEEETTTGGGCCHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHCTTHHHHHH HHHHHHTCC >sa_dssp ECDDECBEDBBCDAADDAEBDECDEEBDCDCDDBEEDCBCCCDEECBACABEECBECBCDDBACBBAACBAABBCCCEEDDEEADECBDEBAEDCEDBDE DBEECDEEE >ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHH HHHHHHHCC >ss_conf 9607999999999999999861134534886243501477860489776258998619999999999999997653057798999999986899899999 999987409 >Consensus xxxrkxlxxilxxxixxxxxxxxxxxxkixirxmKxrWGSCsxxxxxIxlNxxLixxxpxxxidYVIvHELxHlxxxxnHskxFxxxvxxxxPdxkeixx xlxxkxxxx >c4qhfA_ MKDRKILNEILSNTINELNLNDKKANIKIKIKPLKRKIASISLTNKTIYINKNILPYLSDEEIRFILAHELLHLKYGKYHINEFEEELLFLFPNKEAILI NLINKLHQK >UniRef50_Q1MZF0(123-215:228) Putative orphan protein n=1 Tax=Bermanella marisrubri RepID=Q1MZF0_9GAMM E=6e-12 s/c=0.77 id=21% cov=26% ---RNYLTSLTNEKVAALNLQDQLKAVRLR---------------------------------------------------------------------- --------- >UniRef50_Q6L2Z1(105-203:222) Putative uncharacterized protein n=1 Tax=Picrophilus torridus RepID=Q6L2Z1_PICTO E=1e-08 s/c=0.61 id=31% cov=62% -----IIKKLSEKIENKLNYYKNKYDfdyNKIVIRNQKTKWGSCSSEN---NLNFNIrIAFIPEILFNYILFHEIVHTR--------------------- ------------- >UniRef50_A7BB78(3-76:169) Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BB78_9ACTO E=0.0005 s/c=0.62 id=21% cov=52% ------------------------ADWRFRFDHAKRRAGACTHASRTISLSGPLTDLYDEGTIRGVILHEIAHALVGPSH-------------------- --------- >UniRef50_C0W1W5(79-174:180) Possible metal-dependent hydrolase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1W5_9ACTO E=7e-21 s/c=1.05 id=27% cov=72% ----QILKARINAMLPMLNDRFEAEPARISIKRMKTRWGSCRPDRRTLSINLHLV-HLADELLEYVLVHEYAHF-FARGHGRDF---------------- --------- >UniRef50_A7I138(119-213:215) Putative uncharacterized protein n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I138_CAMHC E=7e-17 s/c=0.93 id=17% cov=86% ---KEFLREKILNFIQKFQPFINKKINRVTLRKMNTRWGSCNTKKGYLNFSTKLAEK-PLDFIEYVVLHEMTHLIFP-HHKPEFYDFIKKIMPDFRKI-- --------- >UniRef50_A6LU85(155-245:259) Putative uncharacterized protein n=7 Tax=Clostridium RepID=A6LU85_CLOB8 E=1e-16 s/c=0.96 id=24% cov=84% ---RKETLEIVTQRIGYYSKNFRDKVTGIRVKEQKRRWASCTWKN-VILFNWRC-SMARPDVLDYIVVHEMCHMDH-RNHSKDFWNRVHEIMPDYKE--- --------- >UniRef50_C7DHU7(154-246:253) Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHU7_9EURY E=1e-15 s/c=0.91 id=21% cov=79% ----------LGEIVEKINSSGPKSEVrRLIVKPSRRVWGYYSTKDGSLMLNTKLL-YAPYQILEYVVVHELVHAK-IRSHSRRFWDMVRSFIPDYKE-- ---------- >UniRef50_Q3ME07(17-105:111) Metal-dependent hydrolase-like n=3 Tax=Cyanobacteria RepID=Q3ME07_ANAVT E=2e-12 s/c=0.82 id=32% cov=58% ----------LKNAVREWCDRIQVTVKQVQLRPMKRKWASISHTGRLTLNTGL--LNLPTELGEFVIVHELVHL-------------------------- --------- >UniRef50_C5J5X5(126-225:231) Putative uncharacterized protein MCJ_001740 n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J5X5_MYCCR E=2e-08 s/c=0.60 id=22% cov=63% ---KAIIEKFCQYMIKRTNFWITKMGIEqsylVKINKKKTSWAT-NYNKSKIHYSTALIPF-DQDVLDYVIIHELSH----------------------- ------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 K 2 * * * 1611 * * * * 572 * * * * * * * * * * * 2 0 * * * * * * 2017 0 0 D 3 * * 654 2454 * * * * * * * 2457 * * * * * * * * 3 0 * * * * * * 2513 0 0 R 4 * * * * * * * * 1598 * * * * * 705 * * * * 4153 4 0 * * * * * * 4270 0 0 K 5 3056 * * 2362 * * * * 971 * * 5479 * 2711 * * * * * * 5 0 * * * * * * 4577 0 0 I 6 * * 3397 2203 4478 * * 1613 4641 4107 4359 * * 4270 4362 * * 4401 * 5550 6 0 * * * * * * 4662 0 0 L 7 2836 4349 * * 4252 * * 2084 * 1405 4383 * * * * * 4365 4370 * * 7 0 * * * * * * 4750 0 0 N 8 * * * 2725 * * * 4370 1450 3410 * 2792 * * 2996 4236 5843 * * * 8 0 * * * * * * 4750 0 0 E 9 4612 * 2945 1529 * * * * 1748 4547 * * * * * 3299 * 4617 * * 9 0 * * * * * * 4758 0 0 I 10 * * 4384 * 4278 * * 1298 3768 2263 * * * 4450 4648 * * 3659 * 4401 10 0 * * * * * * 4761 0 0 L 11 * 4459 * * 3330 * * 2101 * 1225 * * * * * 4574 6627 2816 * * 11 0 * * * * * * 4912 0 0 S 12 * * * 2003 * 3796 * 4619 3571 5009 * 2337 3897 3183 * 3182 4742 * * * 12 0 * * * * * * 4912 0 0 N 13 4931 * 4906 2725 3875 4682 4591 * 2792 * * 2217 4885 3434 4854 * 4877 * * 3652 13 0 * * * * * * 4912 0 0 T 14 4365 * 4619 * 5009 * 4682 1941 4311 3487 3676 * * * 3000 3315 4817 3890 * 4877 14 0 * * * * * * 4912 0 0 I 15 * * * 4640 4658 * * 1438 4938 2153 4935 * * * * * * 1938 * * 15 0 * * * * * * 4909 0 0 N 16 3900 * 4034 3769 * 4751 * 4841 2201 * 4962 2316 4963 3520 3562 4658 * 4935 * * 16 0 * * * * * * 4909 0 0 E 17 3662 * 4962 2226 * * 4735 4163 1571 * 4963 * * 3352 4534 4841 * * * 4751 17 0 * * * * * * 4909 0 0 L 18 4922 * * * 2926 * 4773 3241 * 1956 4034 * * * * * 4534 * 3248 2146 18 58 4665 * 0 * * * 4909 1000 0 N 19 4996 4406 * 2865 * 4827 * * 4665 5275 * 1582 4922 3930 * 2457 4735 * * 4985 19 0 * * * * * * 4909 0 0 L 20 4956 * 3658 * 4534 * * 3881 2177 2080 * 4962 5106 4735 * 2739 4996 * * 4640 20 52 * 4827 * * * * 4909 0 0 N 21 * * * 4993 5058 * * 3061 4038 3767 * 1755 * 4357 3586 3967 4613 * 4463 3240 21 0 * * * * * 0 4892 0 1000 D 22 * * 4488 2842 2781 4597 5004 2267 4666 2819 3054 * * * * * 3975 5313 * * 22 58 * 4667 * * * 0 4927 0 1000 K 23 * * 4099 4133 * 3581 * * 1669 * * 2533 4587 2931 4714 4710 4752 * * 5178 23 54 * 4768 * * * 0 4423 0 1327 K 24 5255 * 4845 3596 4028 * * 5311 1901 2699 * 5156 * 4050 3733 4780 4114 3468 * * 24 0 * * * * 1601 577 4457 0 1570 A 25 2099 * 5648 3343 * * 5710 * 3056 5420 5144 3717 * * 5574 2551 3829 * * 3071 25 0 * * * * 1000 1000 4622 0 1385 N 26 4028 * 3146 3528 * 3803 * 3511 4387 * 5199 4325 1979 5472 * 4132 * 3604 * 4666 26 38 5277 * 1585 585 0 * 4708 1000 1000 I 27 4738 * * * 5453 5621 5832 2805 3201 5436 * 4149 3890 5630 5286 3782 3694 1889 4745 * 27 72 4370 * 998 1002 * * 4757 1623 0 K 28 * * 6436 2671 * 5709 * * 1191 * * 5958 * 3818 2470 3779 5863 5897 * * 28 59 4631 * 1783 495 * * 4693 1880 0 I 29 * * * * 3660 * * 1407 * 2269 * * * * * * * 1795 5115 5702 29 21 * 6117 * * * * 4746 0 0 K 30 5780 6790 5284 4806 5372 6781 6226 4851 2218 * * * * 3317 1897 2835 4100 5065 * 5795 30 0 * * * * * 0 4741 0 1000 I 31 * * * * 3145 * * 1163 * 2698 6229 * * * * * * 2058 * 4927 31 0 * * * * * 0 4746 0 1000 K 32 5533 * 5516 * 6086 5142 * * 2011 5498 7030 5614 6314 4208 1023 6137 5752 5390 * * 32 0 * * * * * 0 4746 0 1000 P 33 5077 * 3063 4077 6472 6354 4102 * 2389 4713 * 3807 2425 5103 3753 4486 4565 4925 * * 33 0 * * * * 0 * 4746 0 1000 L 34 4116 * * * 4891 * * 5445 4178 3195 1098 6323 6383 3092 * 4940 4243 * * 5212 34 0 * * * * * * 4765 0 0 K 35 * * 5447 5675 * 5543 * * 522 * * 4568 * 5659 3034 5734 5287 6508 * * 35 0 * * * * * * 4765 0 0 R 36 4361 * * * * 5174 * * 3387 * 5286 4330 * 5401 1923 2412 1850 * * * 36 0 * * * * * * 4784 0 0 K 37 4578 * * 6729 * * 6566 6116 1748 5311 * 6342 * 4785 1066 4979 4932 6622 * * 37 0 * * * * * * 4784 0 0 I 38 4800 * * * 5247 * * 4051 * 5472 * * * * * * * * 226 * 38 0 * * * * * * 4784 0 0 A 39 2087 * * * * 387 * * * * * * * * * * * * * * 39 0 * * * * * * 4784 0 0 S 40 5082 6290 * * * * * * * 6853 * 6546 6079 * 5962 357 3696 6514 * 4696 40 43 * 5087 * * * * 4784 0 0 I 41 5628 437 * * 5414 * * 4589 * 6060 6152 4636 * * * * 6019 4538 * 4361 41 11 * 7064 * * 0 * 4763 0 2008 S 42 6901 * 5075 * 6523 * 6100 5244 5130 5924 6770 2654 * 6195 5265 1165 2567 * * 4549 42 332 * 2281 * * 0 * 4783 0 1000 L 43 5096 * * * 3650 5650 3554 3576 6511 4467 5327 * 1821 * * 2871 4006 3727 5855 4431 43 28 * 5719 * * 0 * 4737 0 3400 T 44 3495 * 5234 5493 * 6090 5886 * 1993 5330 * 3466 * 4536 4039 2847 2835 4748 6422 4945 44 115 * 3711 * * 0 * 4793 0 1506 N 45 5349 * 3898 5503 * 5109 6541 * 2038 6854 6039 2085 * 6433 2869 4282 2985 * * 5845 45 86 * 4105 * * 0 * 4800 0 2892 K 46 5514 * * 4955 * 1529 5552 * 2130 6404 6319 3079 * 5923 2534 5812 * * * * 46 73 * 4338 * * 320 2330 4775 0 2371 T 47 4351 * 5778 4727 * 6345 4555 3564 3546 4077 6943 4067 * 5021 3927 3489 1875 4201 * 5050 47 0 * * * * 584 1587 4789 0 2473 I 48 * * * * * * * 668 * 2055 5256 * * * * * 5704 3564 * * 48 19 * 6266 * * 1000 1000 4785 0 1576 Y 49 6199 4800 * 6449 6953 * 5882 4057 * 4115 5077 3715 * * 2768 2680 1914 4726 5615 3966 49 13 * 6837 * * 0 * 4789 0 1525 I 50 * * * * 1968 * * 2809 * 1090 5942 4988 * * * * * 4974 * 4256 50 0 * * * * * 0 4809 0 1000 N 51 4548 * 4634 * * * 5518 * * * * 547 * * * 2480 4988 * * * 51 12 * 6935 * * 0 * 4809 0 1000 K 52 3951 6996 6099 * 4412 4749 6764 5479 3914 2542 * 6865 4335 5796 3282 4921 2863 4512 2727 6084 52 0 * * * * 0 * 4812 0 1000 N 53 3700 6322 4589 3291 6202 6341 4500 * 2780 5712 7005 3639 5234 3769 2216 4058 * 6526 7139 4298 53 99 6341 4216 0 * * * 4808 1000 0 I 54 6473 6151 * * * * * 3935 * 303 * * * * * * * 3337 * * 54 114 6592 3934 0 * 386 2092 4760 1000 2438 L 55 2636 * * * 6070 * * 1710 * 2227 3489 * * * * * 4971 2519 * 6702 55 721 * 1346 * * 228 2777 4750 0 2758 P 56 3070 5740 3722 3041 * 5440 3882 * 2857 4662 5609 * 4221 3754 2881 4208 6238 4464 * * 56 234 * 2740 * * 19 6288 4610 0 4194 Y 57 5407 * 6197 6936 2519 * 3821 * 2354 3380 2785 3711 * 4635 4705 * * * * 3085 57 456 * 1884 * * 0 * 4829 0 3007 L 58 1850 5656 6277 * 4211 6730 * 4981 * 1498 5245 * * 4969 5462 5280 4549 4343 * 4568 58 0 * * * * 0 * 4739 0 3747 S 59 6831 * 2913 3720 6090 * * * 6580 6235 6645 6339 825 * 4856 3143 6678 * * * 59 13 * 6776 * * * * 4810 0 0 D 60 4096 6836 4075 2616 5282 6275 * 4055 3220 4007 5803 5205 2990 4823 4121 4331 4451 5146 6452 4530 60 49 * 4897 * * 0 * 4753 0 1000 E 61 4178 * 3250 1424 6083 5241 5672 4519 3817 * * 4763 4084 5044 4378 4030 4534 * 6258 * 61 22 * 6076 * * 0 * 4736 0 1903 E 62 4145 2881 * 3643 3930 7090 * 2909 * 2065 6685 * * 6961 * 7146 5020 2292 * 5462 62 0 * * * * 0 * 4742 0 1000 I 63 5123 6416 * * 5379 5694 * 1093 * 1977 4456 * * 5255 5552 * * 3572 5935 * 63 0 * * * * * * 4754 0 0 R 64 6086 * 1281 1740 5936 6093 5515 * 5805 5316 * 5227 * 6326 3206 6352 * * * 5726 64 0 * * * * * * 4754 0 0 F 65 4756 * 5847 6496 4534 5777 * * * 6800 5996 7459 * 6610 * 6300 * * * 286 65 0 * * * * * * 4754 0 0 I 66 * * * * * * * 2614 * 3602 * * * * * * 5847 440 * * 66 0 * * * * * * 4754 0 0 L 67 5051 5376 * * * * * 1199 * 2543 5620 * * * * * * 1652 * * 67 0 * * * * * * 4754 0 0 A 68 2824 4797 * * 5512 * * 2567 * 2153 5443 * * * * * 5845 1608 6391 5211 68 0 * * * * * * 4754 0 0 H 69 * * * * * * 0 * * * * * * * * * * * * * 69 0 * * * * * * 4754 0 0 E 70 * * * 0 * * * * * * * * * * * * * * * * 70 0 * * * * * * 4754 0 0 L 71 5376 * * * 4514 * * 3338 * 546 3857 * * * * * * 4382 6689 5518 71 0 * * * * * * 4754 0 0 L 72 1735 1821 * * * * * 4617 * 3947 * * * * * 3701 3817 2615 * * 72 0 * * * * * * 4754 0 0 H 73 * * * * * * 0 * * * * * * * * * * * * * 73 0 * * * * * * 4754 0 0 L 74 4398 * * * 2917 * * 3161 * 760 4940 * * * * 6982 4629 5012 * 7384 74 62 * 4567 * * * * 4696 0 0 K 75 5519 * 5773 * 6076 6216 * 3358 1284 3097 * * 4601 6185 2963 * 6527 3442 5601 * 75 189 4100 3949 0 * 0 * 4665 1733 2213 Y 76 * * * 2563 3142 * 1626 6091 4634 * * * * 6092 * * * 3887 5838 2066 76 657 * 1450 * * 0 * 4614 0 2484 G 77 3426 * 4264 * * 2742 * 5196 * * * 5468 1458 3779 5084 3926 4711 3550 * * 77 864 * 1150 * * 0 * 4419 0 3598 K 78 * * * * 3949 * 4221 3707 2558 3922 2969 * 3955 5695 1824 4295 5349 * * * 78 151 * 3328 * * 0 * 4372 0 3537 Y 79 * * 2981 * * 3825 3064 * * 5851 * 1007 * * 5161 4445 * * * 3404 79 0 * * * * 0 * 4469 0 2147 H 80 * * * * * * 0 * * * * * * * * * * * * * 80 0 * * * * * * 4504 0 0 I 81 * * 6662 * * 3186 * 4477 6292 * * 2772 * 3784 4689 902 5077 * * * 81 0 * * * * * * 4518 0 0 N 82 4428 * 3827 4953 * * * 5582 1223 * * 4943 3918 3772 3638 3338 5306 5303 * * 82 0 * * * * * * 4518 0 0 E 83 4111 * 2710 2243 * 4893 6056 5554 3133 4518 * 5007 * 4090 2924 4547 4057 6662 * 5950 83 0 * * * * * * 4518 0 0 F 84 * * * * 39 * * * * * * * * * * * * * * 5233 84 0 * * * * * * 4518 0 0 E 85 * * * 3527 5735 * 5086 * 4325 * * * * 4844 5799 * * * 1136 1702 85 0 * * * * * * 4607 0 0 E 86 2935 * 3230 3031 * * 6211 5781 3104 * 5407 2315 * 5091 2753 3859 5555 * * * 86 0 * * * * * * 4607 0 0 E 87 4989 5534 * 1940 3823 * 5810 5722 * 1793 4149 * * * 4046 * 3452 * * 3609 87 0 * * * * * * 4607 0 0 L 88 * * * * * * * 3182 * 1326 3336 * * * * * * 1351 * * 88 0 * * * * * * 4607 0 0 L 89 4036 5645 3858 2154 6185 4980 4476 * 4289 4636 * 4681 * 3638 3322 3547 3635 4537 * 6033 89 0 * * * * * * 4605 0 0 F 90 4948 5459 6136 3292 5587 5425 * * 1623 4712 6244 4116 * 5659 2887 3640 3113 * * * 90 0 * * * * * * 4605 0 0 L 91 * * * 5996 3536 * 5963 2637 5272 2178 5363 * * * 4530 5913 * 3150 5645 1956 91 0 * * * * * * 4605 0 0 F 92 * 3588 4997 * 2484 * * 4184 * 2416 1786 * * 5652 * * * 4907 * 3045 92 0 * * * * * * 4595 0 0 P 93 * * * * * * * * * * * * 74 * * 4327 * * * * 93 0 * * * * * * 4575 0 0 N 94 * * 1050 5495 * 5119 5502 * 3712 * * 1561 * * * 5110 * * * * 94 59 4644 * 1000 1000 * * 4517 1000 0 K 95 3491 * * * 3957 * * * 4673 * * 3269 * * 5741 * * * 2187 1103 95 0 * * * * * * 4348 0 0 E 96 5082 * 4590 2659 5513 * * * 1015 * * * * 4948 2174 * * * * * 96 119 3661 * 1000 1000 * * 4348 1383 0 A 97 3418 * 3700 865 * * * * 3557 * * 4574 * 2932 * 5488 * * * * 97 0 * * * * * * 4329 0 0 I 98 * * * * * * * 1281 * 1730 * * * * 4625 * * 2020 * * 98 0 * * * * * * 4017 0 0 L 99 * * * 1752 * * * * 1594 1860 * * * * * * * 3372 * * 99 0 * * * * * * 3367 0 0 I 100 * * 3085 * * * * 1429 1874 3116 * * * * * * * 3029 * * 100 0 * * * * * * 3136 0 0 N 101 * * 1888 1633 * * * * 2937 * * 2776 * * 2933 * * * * * 101 0 * * * * * * 2978 0 0 L 102 * * * * * * * 1935 * 704 3007 * * * * * * * * * 102 0 * * * * * * 2978 0 0 I 103 * * * * * * * 1101 2308 2488 2703 * * * * * * * * * 103 0 * * * * * * 2748 0 0 N 104 * * 2308 * * * * * 2771 * * 1534 * 2713 * * 2703 * * * 104 0 * * * * * * 2748 0 0 K 105 * * * * * * * * 0 * * * * * * * * * * * 105 0 * * * * * * 2438 0 0 L 106 * * * * * * * 1962 * 428 * * * * * * * * * * 106 0 * * * * * * 2438 0 0 H 107 * * * * * * 983 * * * * * * 1018 * * * * * * 107 0 * * * * * * 1526 0 0 Q 108 * * * * * * * * * * * * * 983 1018 * * * * * 108 0 * * * * * * 1526 0 0 K 109 * * * * * * * * 0 * * * * * * * * * * * 109 0 * * 0 * * * 1000 0 0 //