HHsearch 1.5 NAME c4qf3A_ FAM FILE c4qf3A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4qf3A_.a3m DATE Sat Jul 5 09:08:30 2014 LENG 57 match states, 57 columns in multiple alignment FILT 104 out of 1848 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.0 EVD 0.5114 1.7498 SEQ >ss_dssp CCCCCCCBTTTCCCCCGGGEEEBTTTCCEEETTTSSSCCCSCCSSCBCCHHHHHHHC >sa_dssp EEEEEDDADEDEEBDDEECBBDADDDEEBBABDBBEEECEEDCEEECDCEDCEEEEE >ss_pred CCHHHEEHHHCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEECCCCEECCC >ss_conf 986331324315899976099961899843358616788658874434633113379 >Consensus xsxxxxxCxiCxxxxxxxxxixCdxCxxxxHxxCxxxxxxxxxxxxWxCxxCxxkxs >c4qf3A_ MSIMKVYCQICRKGDNEELLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIAKAS >UniRef50_Q69ZZ4(277-333:358) MKIAA0783 protein (Fragment) n=8 Tax=Euteleostomi RepID=Q69ZZ4_MOUSE E=6e-07 s/c=0.97 id=27% cov=96% ---LRTECSTCKGTGDNENLVRCDECRLCYHFGCLDPPLKKSPKqtgYGWICQECDSSSS >UniRef50_Q22KG7(736-788:1244) PHD-finger family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q22KG7_TETTH E=5e-05 s/c=0.92 id=27% cov=91% ----EIDCKICFNnySSESNPVVYCSLCSASFHQFCY--GIKEIPHDDFLCDLCLFRQS >UniRef50_UPI00017916DC(88-137:671) PREDICTED: similar to polycomblike 2 n=1 Tax=Acyrthosiphon pisum RepID=UPI00017916DC E=0.0005 s/c=0.91 id=26% cov=88% ------FCNVCNIEAMPDDICVCDKCANVYHRKCHKPEVEVTDVTVWICFQCKEK-- >UniRef50_Q17PX1(58-106:2135) Putative uncharacterized protein n=1 Tax=Aedes aegypti RepID=Q17PX1_AEDAE E=4e-06 s/c=1.07 id=27% cov=86% -------CAECRRPNNvEPYMVQCGNCKCWYHLSCANMDVATVQSREFVCARCLPK-- >UniRef50_B4NXU0(17-71:563) GE18218 n=1 Tax=Drosophila yakuba RepID=B4NXU0_DROYA E=3e-07 s/c=1.03 id=25% cov=96% VSSEDVYC-VCRQSHSNGFMICCDKCNEWFHGDCIGLPADIGEQHDtFYCSECCSQ-- >UniRef50_Q6ATM9(14-66:436) Os03g0421000 protein n=3 Tax=Oryza sativa RepID=Q6ATM9_ORYSJ E=1e-05 s/c=0.95 id=26% cov=93% ----EMVCGICGSGHDQDRMAKCIRCNVYQHCYCFPVVTYDVP-DEWCCCECQNKSN >UniRef50_D1INJ1(72-122:1907) Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1INJ1_VITVI E=0.0005 s/c=0.89 id=27% cov=84% ------VCAVCGAPEVGAQVLVCDGCERGFHlVCVGMPGRQAGMLEEWVCGECV---- >UniRef50_D1HIW7(630-685:1111) Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HIW7_VITVI E=1e-06 s/c=0.97 id=18% cov=100% ISDTDAFCCVCGSSNKDEINCLLECSRCLIRVHQACYGVSRVPKGRWYCRPCRTSS- >UniRef50_UPI0000D57876(739-792:1019) PREDICTED: similar to phd finger domain n=1 Tax=Tribolium castaneum RepID=UPI0000D57876 E=0.0006 s/c=0.84 id=18% cov=96% MKQEEIINCTCGYTEEDGLMIQCDLCLCWQHAFCNNIERESQVPEKYVCYICQN--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 2481 * * 1321 * * * * * * 1249 * * 1 0 * * * * * * 3640 0 0 S 2 * * 3115 * * * * * 3558 * * * * * * 447 3918 * * * 2 0 * * * * * * 5118 0 0 I 3 3607 * 3771 * * * 4790 2773 4602 2627 * * * 3908 * 4595 3023 2132 * * 3 0 * * * * * * 5590 0 0 M 4 * * 4955 1028 * * 4653 * 5111 4037 2902 4511 * * * 3675 4055 4978 * * 4 0 * * * * * * 6063 0 0 K 5 * * 1629 1894 * 5191 4804 * 3285 5485 * 3812 * 3651 5540 4402 * * * * 5 0 * * * * * * 6515 0 0 V 6 2188 * 4718 5532 * * * 2205 * 2605 4783 5866 * 6091 * 5539 4284 2456 * 5927 6 0 * * * * * * 6728 0 0 Y 7 6359 * 5994 4995 2947 * * 3013 4046 4214 4834 4642 6049 * 3370 6383 4347 2630 * 2616 7 0 * * * * * * 6942 0 0 C 8 * 53 * * * * * * * * * 5589 * * 6012 * * * * * 8 128 * 3559 * * * * 7259 0 0 Q 9 3060 3100 4115 2961 4991 3744 4213 6710 4005 5257 6267 4381 6834 4421 5629 4011 5419 3806 6178 6381 9 30 * 5625 * * 0 * 7266 0 3584 I 10 4536 5561 7014 4336 6319 5081 5396 1880 5236 3540 5726 5624 * * 4346 6663 4144 1927 * 6551 10 17 6458 * 0 * 0 * 7277 1000 1586 C 11 * 65 * * * * * * * * * * * * 5226 * * * * 5874 11 43 5899 6339 1000 1000 * * 7276 1535 0 R 12 7089 * 4221 3964 5822 1566 4751 5569 3154 * * 3415 * 4638 2448 4975 * * * * 12 63 4538 * 1136 876 0 * 7261 2612 1000 K 13 4915 5677 4048 3209 * 4779 5579 4688 3215 3919 5283 4111 * 3710 2527 3110 5426 6845 * 5185 13 59 4630 * 1777 498 * * 7287 2732 0 G 14 5059 4149 4121 4506 5190 2997 5999 6255 3854 5850 5976 4753 3301 4756 4994 2665 4011 3989 5186 6472 14 41 5147 * 775 1267 * * 7287 2173 0 D 15 4075 5768 2266 3148 * 2443 4077 6639 4400 6887 * 2855 * 7028 6518 4175 4376 6575 * 5522 15 129 3760 6437 1101 906 * * 7287 3698 0 N 16 4812 * 1916 2717 6252 5201 4452 6806 4244 4893 6400 3074 7220 5913 4695 3544 4627 5266 6468 6645 16 80 4744 5912 650 1462 0 * 7255 2607 1000 E 17 3865 6560 2614 2104 * 2871 * 5060 * 5544 6503 4504 2910 4955 4994 5399 4848 5969 6568 * 17 50 4876 * 798 1234 1029 971 7280 2395 1580 E 18 4961 6393 2158 2948 * 2931 5187 6608 4795 5678 * 3270 4283 5683 3954 3589 4165 * * * 18 42 5745 6626 1000 1000 * 0 7277 1666 1000 L 19 5755 4296 2800 3887 4594 6773 5865 4980 3866 3815 6820 3520 3777 4798 3129 4387 4395 4779 * 5093 19 12 6871 * 0 * 0 * 7270 1000 1602 L 20 6911 6589 * * 4619 * * 2961 6603 2247 1674 5003 * 5818 6477 4800 4807 3322 5307 5579 20 62 4564 * 267 2567 * * 7287 2657 0 L 21 4976 4541 * 5859 5377 * * 1772 * 1819 5094 * * * * * * 1845 * * 21 23 7078 6903 4322 74 * * 7287 1000 0 L 22 3914 2947 6554 3483 3302 5321 6482 4382 4922 2668 6735 5001 6417 3100 6927 5987 6697 3196 * 5930 22 36 5358 * 0 * 0 * 7290 2051 1000 C 23 * 46 * * * * * * * 5003 * * * * * * * * * * 23 19 6255 * 0 * * * 7287 1000 0 D 24 5322 6522 1125 2084 5668 5922 * 5416 5488 5933 * 4579 * 6345 * 3769 4960 * 6400 * 24 45 5010 * 1000 1000 * * 7287 2402 0 G 25 4445 4249 4094 4156 6583 2424 5681 6345 3261 4692 5800 3890 * 6249 3302 3203 4588 4560 * 5453 25 47 4971 * 0 * * * 7287 2279 0 C 26 * 181 6655 6439 * * * * 6255 5812 * * 5823 * 5916 5003 * * * * 26 16 6497 * 0 * * * 7287 1000 0 D 27 4699 * 2903 3250 * 2962 4825 * 4125 5126 * 2744 3730 4127 3360 4515 5760 6614 * 5538 27 0 * * * * * * 7287 0 0 K 28 3680 2746 4750 4251 6741 4198 4936 5841 3622 4279 * 3744 * 4371 2915 4144 3978 4484 * 5941 28 31 5543 * 1329 732 * * 7287 1511 0 G 29 3759 4490 * 5285 5677 2876 4212 5658 * 4174 6589 5752 5599 * 4871 3669 5661 3820 1785 5156 29 9 7305 * 0 * * * 7287 1000 0 C 30 6345 7161 * * 1752 * 6516 4610 * 6743 * 5918 * 2961 6499 5761 6256 3769 3917 1758 30 0 * * * * * * 7285 0 0 H 31 5817 * * * * 5831 125 * * * * * * * 5004 * 5918 * * * 31 45 5509 6850 0 * * * 7285 1626 0 T 32 5215 4942 6437 6063 3796 3704 6340 3795 * 2486 4230 4928 5360 3158 5086 5360 3839 3291 4812 5757 32 43 6615 5727 0 * * 0 7287 1000 1000 Y 33 4104 4911 3162 3688 4018 5546 3332 6484 2804 6895 5728 5760 6939 4857 3579 3656 5244 6789 5644 3723 33 25 * 5838 * * 1503 628 7278 0 2068 C 34 * 198 * * * * * * * 5175 * * * 4609 * 5770 5739 5454 * * 34 21 7280 6990 2585 263 1042 959 7270 1000 2542 H 35 3823 4287 4704 * 4599 4606 3708 4363 * 2016 3629 5699 * 6481 * * 5091 2403 * 4173 35 23 * 5974 * * 581 1593 7277 0 2097 R 36 6862 2957 2893 4341 * 2436 6480 7278 3749 * 5493 2841 4183 4010 5323 5742 4453 5315 * 6876 36 58 5080 6705 1378 701 1577 589 7278 2104 1998 P 37 4557 * 6423 5583 5182 5194 * 2876 * 3343 5766 * 1497 6505 5549 6383 4602 3182 * 3899 37 73 4338 * 192 3002 0 * 7274 2860 2054 K 38 4441 * 4371 4341 * 2709 * 5779 4761 4828 * 3870 1668 6999 4117 4831 4641 3841 5685 * 38 76 4896 5811 2501 280 * * 7285 2133 0 I 39 4883 * 6752 4713 5033 4572 6429 3806 5262 1841 3309 5185 5067 4785 3983 4734 6354 2978 * 5423 39 60 4615 * 3202 166 0 * 7271 2507 1645 T 40 3808 * 3875 2958 4016 * 6808 4558 2842 4551 6585 4451 3866 4421 4663 3306 3780 5667 * 4969 40 46 4991 * 1321 738 * * 7285 2322 0 T 41 3839 6652 2577 2859 6727 4847 6600 5961 3457 6792 * 3828 4695 4676 3784 3380 4461 4554 * 4668 41 54 5464 6154 1000 1000 * * 7285 1990 0 I 42 3785 * 4667 4112 4770 3908 * 3616 4196 3220 5029 5119 3614 4406 6403 5018 6402 2105 * 6898 42 46 5403 7011 1207 819 * 0 7296 1478 1579 P 43 4366 * 3629 4369 6885 * 5463 6338 3599 5626 5471 4644 1237 5955 4394 3899 6612 4374 * * 43 68 4889 6331 2548 271 0 * 7293 2520 1988 D 44 3485 * 3785 2438 * 5715 5959 4676 2956 4425 * 4500 4549 5191 4093 3443 3273 5438 * 6310 44 142 3412 * 705 1372 0 * 7267 3948 1000 G 45 3703 * 2838 3119 5879 2214 5198 4746 4390 * * 4924 * 7076 3376 4261 4143 5175 * 4307 45 112 4385 5235 1157 858 * * 7285 2710 0 D 46 5594 * 2460 2638 6513 4174 6384 5676 3514 6591 * 3999 4390 3358 3870 4008 4548 5494 * 4722 46 106 3825 * 1581 587 0 * 7262 3655 1689 W 47 * * * * 3186 * * * * * * * * * * * * * 489 2494 47 21 6092 * 1747 510 * * 7285 1507 0 F 48 * 6356 6470 * 2267 * 6329 2918 3921 3262 5017 5707 * 5561 3880 4517 5550 3732 * 2519 48 0 * * * * * * 7281 0 0 C 49 * 0 * * * * * * * * * * * * * * * * * * 49 0 * * * * * * 7281 0 0 P 50 3939 6349 3321 4086 4980 5743 5376 * 4604 5092 * 5643 1695 5859 3639 3341 4320 5366 * 5696 50 17 6395 * 1585 585 * * 7258 1000 0 A 51 4433 * 3318 3027 4938 4635 * 5201 4345 3716 5270 3664 4142 3569 3824 3535 4514 4956 6698 5855 51 0 * * * * * * 7232 0 0 C 52 * 0 * * * * * * * * * * * * * * * * * * 52 0 * * * * * * 7209 0 0 I 53 * 6683 4241 5634 6592 * 4942 3066 4274 2290 * 6074 * 3309 3723 4594 2674 3196 * * 53 0 * * * * * * 7140 0 0 A 54 3177 4336 * 4069 6178 4816 * * 3576 * 5131 3252 2943 3920 3675 2684 4095 6403 6240 * 54 40 5191 * 0 * * * 7048 1000 0 K 55 * * * 3277 * * 5498 * 1376 * * 3308 * 4284 2029 3437 * * * * 55 0 * * * * * * 6708 0 0 A 56 2333 * * * * 2682 * * 5338 * * * 5161 2504 3402 1634 * * * * 56 0 * * * * * * 6018 0 0 S 57 2072 * * * * * * * * * * 2066 * * * 1075 4360 * * * 57 0 * * 0 * * * 5422 0 0 //