HHsearch 1.5 NAME c4q9bA_ FAM FILE c4q9bA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4q9bA_.a3m DATE Sat Jul 5 08:25:17 2014 LENG 101 match states, 101 columns in multiple alignment FILT 110 out of 474 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.1 EVD 0.4679 0.5195 SEQ >ss_dssp CCCEEEEECCCHHHHHHTCEEEEEEEEEESSCCCEEEEEEETTEEECTTEEECCCEECSSCEEEEEEEEEEHHHHTTTCCEEEEEEETTCSSCEEEEECC C >sa_dssp EEBDBDCDDBEEEBBEEEECACACACADBEDECDBDBDBDAEEEECEEDCEDCEDEEEEEDCCABACADBDBECBDEDCDACACADBEECEEDCEDEBDD E >ss_pred CCEEEEEECCCHHHHCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEEEE C >ss_conf 9607997089977832688357999996450513799999778312555200101058840999999999000024588499999839888763799871 9 >Consensus xxvxvxxxpPsxxxxxxxxxxtLxCxxxxfxPxxixvxWxxxgxxxxxxxxxxxxxxxxgtyxxxSxLtvxxxxxxxgxxytCxVxHxxlxxpixxxxxk x >c4q9bA_ SEIAVLLRDPTVEEIWIDKSATLVCEVLSTVSAGVVVSWMVNGKVRNEGVQMEPTKMSGNQYLTISRLTSSVEEWQSGVEYTCSAKQDQSSTPVVKRTRK A >UniRef50_UPI000175FFA4(107-210:898) PREDICTED: similar to signal-regulatory protein beta 1 n=1 Tax=Danio rerio RepID=UPI000175FFA4 E=1e-12 s/c=0.71 id=16% cov=99% TEVTLTILAPPVVSIispeaVLKRKSVVECWARSFSPPQIMFTWTRGGNKIQEPQKLQVNRTEDGLYDAVSFLTFIPQISNQNISFGCEVQHSALVKPVL EEFT-- >UniRef50_A8DZH7(106-207:257) Novel protein (Fragment) n=1 Tax=Danio rerio RepID=A8DZH7_DANRE E=0.0001 s/c=0.47 id=15% cov=77% ---------PKIKSLITNQEQMLSCTIYNVYPlERFQIEWLLGDKESVVSPDTYPEELYDHEQNYTSVLNYTHSADNLGKNITCKAT------------- -- >UniRef50_Q0E8B8(279-368:1036) Neuromusculin, isoform B n=10 Tax=Drosophila RepID=Q0E8B8_DROME E=0.0009 s/c=0.50 id=20% cov=64% ----------------------LTCDIHGARPA-VNLTWYntttiiSSGENEITEVRSKSLEKSDGTFHTQSELIFNATRFENDRVFRCEAEN------- ------- >UniRef50_UPI00017B3893(521-621:774) UPI00017B3893 related cluster n=2 Tax=Tetraodon nigroviridis RepID=UPI00017B3893 E=8e-10 s/c=0.64 id=19% cov=99% SPPTVKIMEPTGSHLSTSRVRSLHCIVSGFFPANVLLFWKENDHEVSTTRYTNYGPWKYQGSSTFSMNSVlnTSVSKNISSTYSCVVKHESSKNPFVSTV K-- >UniRef50_UPI0001792168(155-267:1220) PREDICTED: similar to sticks and stones CG33141-PA n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792168 E=1e-05 s/c=0.45 id=18% cov=98% ATLSVLTPPSSVEiintsegsklEVQENHEVSIECVARNSKPASRIVWFRGDEEINPEQRSDNISEETADQtklklFTVRSRIKVTAKSNDDRVKYKCEA HHQALSDPLSTTV--- >UniRef50_UPI000069FE61(130-225:230) UPI000069FE61 related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI000069FE61 E=6e-08 s/c=0.61 id=19% cov=93% ----MTLLGPSLVEMKLYRSATFLCHAARYSPNALRIKWHLNNQSSQHrSYTYPAIQTSSNTFDQTAEVSIPAALWDQGVEVTCILEHETGVQHLTTR-- -- >UniRef50_UPI0000EB308B(116-217:331) UPI0000EB308B related cluster n=1 Tax=Canis lupus familiaris RepID=UPI0000EB308B E=4e-09 s/c=0.61 id=17% cov=101% ASVSSYLSPPSPLDLYVHKAPKITCLVVDLATmEGMNLTWYRESKEPVNPGPLNKKDHFNGTITVTSTLPVNTNDWIEGETYYCRVTHPHLPKDIVRSIA KA >UniRef50_UPI000180C70B(132-234:617) PREDICTED: similar to histocompatibility ligand membrane-bound form n=1 Tax=Ciona intestinalis RepID=UPI000180C70B E=0.0004 s/c=0.45 id=18% cov=95% -EMSVTMHltvfvPPSgikLTTLTSGNNLTLTCRSTRSKPSA-DITWIITTPEASWEIQSSKTVSEGPDTIGYLYQTITPKD--KGTTFTCVVNHPETST TLKKNVS-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 1682 * * * * * * * * * * * * * * 1608 1473 * * * 1 0 * * * * * * 5083 0 0 E 2 4019 * 2558 1134 * * * * * * * * 4406 4464 * 2574 4257 * * * 2 0 * * * * * * 6263 0 0 I 3 * * 4932 * 4709 * * 2429 * 3553 3662 * 3189 * * * * 1091 * * 3 0 * * * * * * 6369 0 0 A 4 3011 * * 4733 * 4785 * * * * * 4773 * 5066 3193 1356 2085 * * * 4 0 * * * * * * 6504 0 0 V 5 * * * 5662 * * * 2268 * 3239 5406 * * * * 5375 * 692 * * 5 62 * 4563 * * * * 7053 0 0 L 6 * * * * 3115 * 4543 5807 3568 3077 * * 5633 * 5453 2665 1830 5210 * 3156 6 0 * * * * 0 * 7010 0 1678 L 7 4178 * 4383 * * 5896 * 2518 * 1289 3945 * * * 5543 5651 3832 3061 * * 7 0 * * * * * * 7150 0 0 R 8 4469 * * 4561 3101 * 2917 4191 5651 2289 5284 4539 5050 4667 3306 4550 5018 4249 * 5731 8 30 5624 * 2322 322 * * 7150 1000 0 D 9 5709 * 4167 3547 * 4911 4892 * * 6080 * * 790 * 5443 4131 4167 4515 * * 9 110 3765 * 1938 436 * * 7261 2776 0 P 10 * * * * * 5580 * * * * * 5374 279 * * 2932 * * * * 10 120 4225 5249 1810 484 * * 7549 2079 0 T 11 3061 4860 * 5782 * 6355 6148 * 4283 * * 5835 3581 5996 6163 1053 3055 * * 5893 11 50 4875 * 2389 306 * 0 7626 1685 1653 V 12 4121 4738 4512 4702 4621 4813 5980 4357 * 3186 4507 * 3989 5176 4043 3657 3334 2334 * * 12 43 5081 * 1585 585 * 0 7644 1587 1653 E 13 2912 * 5081 1611 * 5626 * 6321 4923 4799 * 6185 5993 2831 5980 3864 3860 3551 * * 13 74 4713 6369 2964 198 969 1032 7644 1669 1653 E 14 4373 * 2326 1743 * * 4861 5020 5877 4830 * 4276 5109 4635 5956 2656 5135 6377 * * 14 94 * 3985 * * 1000 1000 7644 0 1579 I 15 4376 * * * 4248 5017 * 2401 4897 1860 4281 5813 4859 5254 * 5968 5566 2301 * * 15 72 5001 5828 2580 264 1233 799 7521 1721 2890 W 16 4572 * 4391 3932 4602 * 5746 4776 3239 3441 * 4699 5969 3642 4824 3020 3762 3624 4302 4270 16 19 * 6259 * * 1775 498 7589 0 2493 I 17 3859 * 6053 4119 5627 5064 * 3229 3880 1795 * * 5932 4934 4211 3468 3825 3617 * * 17 46 4980 * 2600 260 1682 539 7808 1695 2585 D 18 * * 2969 3527 * 2673 3834 * 3360 * * 2280 4555 5230 5858 2952 5339 * * 6060 18 38 6025 6561 0 * 1594 581 7828 1000 2091 K 19 4475 * 4001 3528 * 3665 5508 * 2467 * * 3246 4430 2718 2892 4464 6099 5270 * * 19 39 * 5219 * * 0 * 7932 0 2110 S 20 3786 * 4490 3059 4876 * * * 3064 5343 * 3633 4359 4646 6849 1967 2895 5910 * * 20 0 * * * * 0 * 7770 0 1701 A 21 2077 * 4961 6368 * 4470 * 4068 * 3394 6261 4564 6074 5104 5986 3143 5582 1962 * 6254 21 16 6526 * 1000 1000 * * 7809 1000 0 T 22 5182 * 6505 6455 6601 * * * 4010 * 6015 3045 4700 5939 4293 3585 1086 3824 6579 * 22 29 5638 * 536 1689 * * 7831 1688 0 L 23 * * * * 3910 * * 3395 * 563 6150 * * * * * * 3230 * 4618 23 0 * * * * * * 7835 0 0 V 24 4312 * * 4756 * 4072 6279 4719 6731 3458 6708 * * * 4906 2413 1641 2732 * * 24 0 * * * * * * 7835 0 0 C 25 5377 35 * * * * * * * * * * * * * * * * * * 25 0 * * * * * * 7835 0 0 E 26 * * 5784 3431 5381 5417 3153 4138 5460 1965 6120 4698 * 5108 4542 3655 3889 3899 4818 5684 26 16 * 6503 * * * * 7835 0 0 V 27 1311 * * * * * * 2653 * 4231 6198 * * * * 4874 5595 1660 * * 27 11 7008 * 1585 585 0 * 7822 1000 1000 L 28 4554 * 6705 4777 6731 * 6532 5531 3585 3500 4957 4136 6298 5763 3834 2735 1879 4729 * 4389 28 0 * * * * * * 7835 0 0 S 29 * * 2518 5440 * 1530 6288 * 4306 * * 2710 6655 5921 3861 2901 * 6528 * * 29 16 * 6534 * * * * 7835 0 0 T 30 4795 6175 * * 996 3134 * 6702 * 3838 6349 * 6280 * * 3394 6370 6072 6526 3362 30 12 * 6926 * * * 0 7820 0 1000 V 31 4840 * 6314 * 2993 * 4377 6434 3139 6418 5461 4200 * 6364 4342 3214 4502 5351 * 1613 31 11 * 6995 * * 0 * 7823 0 1756 S 32 5161 * 5277 * 6309 * 6531 * * 4270 * 6350 374 * 6500 5547 4514 6516 * * 32 55 4738 * 0 * * 0 7837 2230 1000 A 33 2021 * 3975 3097 * 4771 6114 5318 3077 4715 * 4795 3632 4231 3799 4120 * 5385 * 5854 33 17 * 6448 * * * 0 7847 0 1000 G 34 2748 * 2354 3781 * 3504 6381 5412 6775 6516 * 3047 3230 5466 4979 3441 5351 4620 * * 34 211 4777 3329 0 * 859 1156 7831 2134 1610 V 35 4368 * * * 4988 * 6581 1498 * 3108 4649 * * 5825 5766 * 4726 1675 6280 * 35 85 6500 4437 0 * 0 * 7779 1000 4316 V 36 5666 * 3639 2985 6862 * 5489 4998 3241 4335 5522 3359 * 4302 4094 3312 2711 4987 6668 4923 36 0 * * * * 0 * 7852 0 2509 V 37 6398 * * * 3798 * * 1964 5993 2345 4017 * * * * * * 1417 * 6510 37 0 * * * * * * 8685 0 0 S 38 5763 * * 4178 4278 6891 6764 5511 2861 4614 4978 5444 * 3849 4136 2337 2195 6349 4951 6075 38 0 * * * * * * 8685 0 0 W 39 * * * * 4866 * * * * 6312 * * * * * * * * 94 5956 39 41 5753 6706 566 1623 * * 8616 1709 0 M 40 * * * 5473 3463 * 6551 5868 2736 2338 4524 6672 * 3736 3586 5186 3439 5982 4220 3179 40 42 5763 6575 1000 1000 * 0 8677 1711 1000 V 41 5624 * 5405 3365 6783 5859 5155 4040 2302 3830 5977 7027 6268 3418 2590 5443 6722 2924 * 6590 41 53 4792 * 2433 296 0 * 8664 2697 1733 N 42 5471 * 2128 3630 * 2546 6251 * 4274 * * 1718 * 5586 6386 3734 6460 6861 * * 42 13 6753 * 1585 585 * * 8625 1000 0 G 43 6282 6677 3235 4170 * 1068 6561 * 4918 6702 * 3123 * 6117 * 3362 4840 5373 * * 43 10 7120 * 0 * * * 8625 1000 0 K 44 4716 * * 2794 * 4185 4659 5602 2239 6282 6849 4197 5127 3002 4338 3872 3374 4410 * * 44 41 6710 5746 1585 585 * * 8625 1000 0 V 45 4774 * 4134 2008 6627 5213 * 4219 3836 4021 6690 4341 3374 5124 * 3617 4110 3161 * * 45 38 7019 5787 2585 263 1047 955 8617 1000 1675 R 46 4567 * 6511 5101 * 5363 5749 2388 5331 2072 4606 5171 5008 5349 4444 3812 4902 2775 * * 46 0 * * * * 0 * 8608 0 2365 N 47 5287 * 3757 4694 * 5504 5848 5306 5185 5014 5666 4462 2571 4089 4012 2764 2369 4513 * * 47 28 5709 * 1844 471 * * 8625 1713 0 E 48 3664 6393 3266 2655 6532 3417 5687 4747 5158 5214 * 3286 5428 4074 4441 3176 4345 5687 5640 * 48 27 6610 6867 0 * * * 8636 1000 0 G 49 4451 5806 3108 3366 4709 2503 5637 6668 5172 4995 6544 4035 4356 4410 4500 3360 4151 4781 * 5796 49 28 5712 * 663 1440 * 0 8635 1632 1000 V 50 3840 * 6391 4571 * 6553 5716 3620 4785 5321 4667 4152 4432 4397 3958 3198 3388 2186 * 5274 50 86 4769 5554 890 1119 0 * 8635 2623 1000 Q 51 4955 * 3818 3947 4848 6750 4157 5364 4124 4186 6697 6166 5019 2919 4372 3132 3190 4128 * 3649 51 0 * * * * 1569 593 8640 0 2219 M 52 4791 * 5887 4278 5755 3635 4219 6050 6795 2998 5971 3910 4687 4280 6267 3165 2522 3968 6489 4408 52 61 5282 5990 841 1179 968 1032 8639 1759 1688 E 53 4617 * 4640 3744 5030 4059 6712 5535 4220 6554 * 3297 3632 3692 6782 2513 3024 4074 6257 5715 53 114 4371 5168 1583 586 1585 585 8651 3299 2264 P 54 5562 * 5211 4076 7119 5553 5213 3921 4058 5478 6749 5371 1772 5104 5364 3042 3999 3439 6698 5425 54 37 6001 6702 0 * 0 * 8702 1593 3315 T 55 4064 6625 5206 2858 * 4992 6938 4163 3242 3666 6610 6608 6795 3874 4867 3643 2574 3355 * 7042 55 60 4863 7294 925 1079 0 * 8701 2611 1000 K 56 4372 * 5162 3165 5622 * * 3616 4156 4005 5047 5882 2986 3907 2603 3716 5240 3774 * 6421 56 38 5253 * 2701 241 * 0 8715 2400 1000 M 57 4918 * 3784 3853 6769 4467 2946 6235 4587 4335 5858 2418 5038 3313 5132 3486 3806 * 6388 * 57 25 5848 * 1597 579 * 0 8715 1633 1000 S 58 3795 * 3601 3350 6571 2946 4776 * 3415 5042 * 4153 4650 4444 4723 2667 4138 4848 * 5815 58 58 5045 6741 672 1425 * 0 8649 2579 1000 G 59 5985 6328 1592 6221 * 2164 * * 4973 * * 2001 6472 5607 * 4056 6752 * * 5608 59 57 5702 5680 607 1541 * 0 8640 1718 1640 N 60 5186 * 3384 6640 * 1235 5200 6481 4462 * * 3512 4637 5428 4263 3655 5837 * 4804 5483 60 46 * 4985 * * 1821 480 8620 0 2626 Q 61 7624 6244 5194 4906 * 4415 * * 4687 2759 5552 5928 5421 5324 3580 3021 1388 6290 * * 61 49 5375 6719 1971 425 1490 635 8609 1673 3510 Y 62 6169 6631 * 5586 1835 6655 * 5478 6532 6736 5919 * * 4457 * 4248 5498 4930 * 1143 62 0 * * * * 0 * 8616 0 3014 L 63 5167 5667 4536 * 3797 6844 5928 6467 4844 5688 6132 3800 * 3077 4700 2030 2166 6968 5676 6855 63 0 * * * * * * 8648 0 0 T 64 2314 5221 * * * 4617 * 3620 4445 3170 4667 * 6455 4034 * 5521 3302 2193 6565 5120 64 0 * * * * * * 8648 0 0 I 65 6021 * 6739 5238 3835 * 5564 3310 4272 4942 * 4567 * 4310 3812 2316 2756 3748 5073 4166 65 30 6766 6455 1000 1000 * * 8648 1000 0 S 66 4054 6368 5735 * 6401 4776 6584 * 4649 5717 6377 4696 * 6515 5040 704 5881 4451 5457 * 66 0 * * * * * 0 8621 0 1000 R 67 4982 6509 5931 4319 4608 * 5072 4598 4634 4051 5627 6699 * 3660 3112 3443 2660 3397 5494 3534 67 13 * 6816 * * 0 * 8621 0 1000 L 68 4118 * * * 5124 * * 3154 * 675 5201 6395 * 4759 * * 6352 4078 * 5171 68 0 * * * * * 0 8638 0 1000 T 69 * * * 3421 * * * * 4102 4100 * 4404 5475 4309 3481 2458 1632 4234 * 5472 69 26 5824 * 950 1051 * 0 8638 1636 1000 S 70 * * * * 3676 5297 * 2338 * 2060 6290 * * * 6544 6828 4859 1554 6260 4702 70 45 6395 5729 1000 1000 0 * 8638 1000 1000 S 71 5840 4711 5614 5882 6952 5964 * 4221 5298 3650 5650 3502 3073 5785 5589 2745 1999 4083 * * 71 62 6485 5006 0 * 0 * 8636 1000 1761 V 72 2938 * 6704 4199 6028 * 5715 * 3753 3295 * 6977 1509 5209 5193 3771 4385 4370 * 6399 72 26 * 5834 * * * 0 8596 0 2194 E 73 3541 * 4877 2642 * 4375 5275 5036 3955 * 6502 4733 5740 4473 4526 2071 3362 4062 * * 73 78 * 4252 * * 2170 363 8587 0 2961 E 74 4381 * 2928 1991 6466 6582 4683 6620 3139 4014 7064 6454 5094 4135 3749 3550 5856 4618 * * 74 141 6980 3557 0 * 3238 162 8544 1000 4090 W 75 4621 6898 3695 3210 5610 5391 6067 5658 4844 6575 * 5229 4944 5324 3861 4185 5640 4955 1499 5188 75 11 * 7017 * * 1121 888 8439 0 5567 Q 76 6013 * 1944 3295 * 4923 4838 5292 4259 4023 4179 2619 * 4173 4863 4472 5093 6299 6494 6711 76 15 * 6625 * * 1396 690 8621 0 4218 S 77 3979 * 2883 4093 5474 5632 3717 4528 4000 4971 6113 3026 5987 3319 4313 3043 4884 6049 * 6358 77 16 6504 * 0 * 204 2920 8638 1000 3627 G 78 4858 * 4030 4231 * 1150 5935 * 3819 5238 * 3969 4710 6272 3947 4416 5205 * 5951 5892 78 23 5981 * 566 1624 0 * 8671 1628 1000 V 79 3049 * 3395 3228 * 3860 5427 6678 2712 5823 5793 5136 * 3773 5946 3955 3044 3748 * 6747 79 26 6760 6894 0 * * * 8650 1000 0 E 80 5350 * 5575 3535 * 5579 5556 4443 3543 4139 * 4176 5430 5848 3718 2852 2503 3120 6924 5180 80 0 * * * * 0 * 8655 0 1000 Y 81 * 6512 * * 2011 * 6136 3887 * 3270 * * * * * * * 3028 * 1208 81 10 * 7129 * * * * 8650 0 0 T 82 4887 * 5425 4772 * 5858 5735 4366 5286 6767 6390 6755 * 4623 3912 2161 1509 3913 * 5829 82 0 * * * * 0 * 8662 0 1000 C 83 * 25 * * * * * 5857 * * * * * * * * * * * * 83 0 * * * * * * 8650 0 0 S 84 5969 * 6352 2664 * * 4532 4618 3688 4439 5027 5723 * 3323 3081 5033 3897 2373 4386 * 84 0 * * * * * * 8650 0 0 A 85 2096 * * * 5946 4989 * 5256 * 5689 7345 * * * * * * 601 * 7037 85 15 6601 * 1000 1000 * * 8650 1000 0 K 86 4564 * 4489 2847 4486 4800 6063 5561 3358 4638 6602 3652 * 3275 4152 3174 3452 4079 * 6763 86 16 6529 * 3322 152 * * 8665 1000 0 Q 87 * * 6825 * * * 473 6752 * 5957 * 3750 6144 3655 5758 5196 * 6863 * 5444 87 32 6622 6447 1585 585 * * 8650 1000 0 D 88 5215 6313 4065 2144 * 4543 * 6434 4272 6132 6732 4860 1859 4353 6010 3412 4649 5813 6837 6679 88 12 6951 * 0 * * 0 8529 1000 1000 Q 89 2180 6221 3327 3598 * 2641 6316 * * 5542 * 5835 * 4932 6208 1966 4009 7046 * * 89 0 * * * * 0 * 8521 0 1000 S 90 5456 * 6066 * 5092 5243 5790 4303 * 1111 6132 4313 * 4927 * 2740 3461 4762 * * 90 0 * * * * * * 8526 0 0 S 91 4234 * 5197 3569 * 6210 5248 * 3065 4746 * 4988 2177 3844 6822 2132 4158 5403 * * 91 51 6632 5355 0 * * * 8524 1000 0 T 92 3816 * 4419 3155 6351 4795 4590 6255 2881 6398 5397 4918 5004 3390 4081 2730 3178 * * 5990 92 0 * * * * 0 * 8411 0 1534 P 93 4168 * 3514 4862 6445 4880 5899 6350 5965 * * 3922 854 5575 5180 6647 5305 5113 * * 93 0 * * * * * * 8341 0 0 V 94 7507 * * * 4190 * * 2191 * 1969 4039 * * 4345 6186 6442 4923 1965 6225 5181 94 0 * * * * * * 8364 0 0 V 95 5652 * 5426 3409 * * 5800 3752 3533 4196 * 4396 6904 4063 3889 2523 2456 3471 * * 95 0 * * * * * * 8277 0 0 K 96 3495 * 6098 4432 * 5248 * 5337 1908 5007 * 5871 * 2571 3216 4541 3061 4444 * * 96 0 * * * * * * 8231 0 0 R 97 6020 * * 3181 * 4986 5476 * 3628 * 5932 3599 * * 3159 2014 1998 5031 * * 97 0 * * * * * * 8208 0 0 T 98 * * * * 4704 * * 1849 * 2669 4611 * * * * * 2357 1939 5074 * 98 0 * * * * * * 7341 0 0 R 99 5291 * 4770 * 5429 * 5644 * 3268 * * 3917 * * 2421 2090 1723 * * * 99 0 * * * * * * 7367 0 0 K 100 * * * 4198 * * * * 280 * * * * * 3036 * * * * * 100 0 * * * * * * 5575 0 0 A 101 1542 * * * * 3262 * * * * * * * * * 856 * * * * 101 0 * * 0 * * * 4167 0 0 //