HHsearch 1.5 NAME c4q28B_ FAM FILE c4q28B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4q28B_.a3m DATE Sat Jun 21 08:19:48 2014 LENG 110 match states, 110 columns in multiple alignment FILT 16 out of 20 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.3926 -0.5044 SEQ >ss_dssp CCCEEEEEEEEECCCEECTTTCCEECHHHHHHHTSSCHHHHHHHHHHCEEEEEEEEEETTEEEEEEEETTTTEEEEHHHHHHTTSSCHHHHHHHHTTCSC HHHHHHHHHC >sa_dssp EEEEEDECDCEDECDCDCEEEDDEBCADDACEDEDCDEEDCDDBDEDBCCBCACBCCCEEDEDBCACBDDDEEECDBEDACEDDDADEECCDDBDEEEBD CCDAADCADE >ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCEECHHHHHHHCCCCHHHHHHHHCCCCC HHHHHHHHCC >ss_conf 9741000013206999748988803899998624404678888652234312557754899856887446784310899986069899999998727753 9999987549 >Consensus xxxxxxxtxxkrrIxivdpxTGxemsxxEAyxxglIDxxxylxLxxqEceWeEITixxsxGxxsvlxDrKtGkqyxIxxALxxgxixxxxlxxYrxGxls itEfAxlvsg >c4q28B_ GHHHHHHSHXRRSIVVIHPDTGRELSPEEAHRAGLIDWNXFVKLRSQECDWEEISVKGPNGESSVIHDRKSGKKFSIEEALQSGRLTPAQYDRYVNKDXS IQELAVLVSG >UniRef50_Q4S6R6(2809-2908:3187) Chromosome undetermined SCAF14724, whole genome shotgun sequence. (Fragment) n=3 Tax=Tetraodon nigroviridis RepID=Q4S6R6_TETNG E=2e-13 s/c=0.77 id=35% cov=91% ----------KRRVVIVDPETNRQMTIREAYDKGYIDSQTFLELAKQECEWEEITIVDPDGSTRfVIIDKKTEKKYDITELLEKRLISQSDLDRYRSQSI TLNEFANIIT- >UniRef50_Q4SYB7(1062-1168:1416) Chromosome undetermined SCAF12106, whole genome shotgun sequence. (Fragment) n=10 Tax=Clupeocephala RepID=Q4SYB7_TETNG E=3e-35 s/c=1.39 id=44% cov=98% ---HTRETNLSTRITIMDPETGKDMSPYEAYMQGLIDRNHYIQLSELECDWEEITSSGPDGDVTVLQDRKSGKQYSVKDALREGRLTQYDMMRYKEGKLH ISEFALLVAG >UniRef50_Q15149(4270-4375:4684) Plectin-1 n=102 Tax=Euteleostomi RepID=PLEC1_HUMAN E=7e-33 s/c=1.33 id=38% cov=95% -------SVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLELSEQECEWEEITISSSDGvVKSMIIDRRSGRQYDIDDAIAKNLIDRSALDQYRAGTL SITEFADMLSG >UniRef50_UPI00016E1B35(1974-2073:2290) UPI00016E1B35 related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E1B35 E=1e-30 s/c=1.34 id=40% cov=91% ----------KRRVVIVDPDTGLEMSVREAFHKELIDYDTFLELSEQECEWEEITIKGSDGTSRlVIVDRKTGTQYDIKDCLERGIVDQASLDQYRAGAL TLTQFADHIS- >UniRef50_Q60824(1366-1462:1678) Bullous pemphigoid antigen 1, isoforms 6/7 (Fragments) n=5 Tax=Murinae RepID=BPAEB_MOUSE E=6e-26 s/c=1.22 id=32% cov=88% ------------KIAVVDTKTGAELTAFEAFQRNLIDKGIYLELSGQQYQWKEATFFDSYGHPShMLTDTKTGLQFNISEAVEQGTLDKALVQKYQEGLT TLTELADFL-- >UniRef50_UPI0001A2CEC7(2509-2607:3122) UPI0001A2CEC7 related cluster n=1 Tax=Danio rerio RepID=UPI0001A2CEC7 E=1e-22 s/c=1.08 id=30% cov=90% ----------KHRISVINTSNGDKMSAYEAYKAGIVDKRTYLFLSHQESEWQEITIMDSSRNLLhILSDPKTGRQICIEKALSLKTLQMEELDSYRSGHL SASELADVL-- >UniRef50_UPI000180CAB5(3422-3474:3795) PREDICTED: similar to plectin 1 n=1 Tax=Ciona intestinalis RepID=UPI000180CAB5 E=2e-09 s/c=1.19 id=35% cov=45% -------TQRSRKVVIVDPDSGAEMTVKEAYQKGLIDRATAKQLMQQEGEWTEET--------------------------------------------- ---------- >UniRef50_UPI000180CAB5(2996-3059:3795) PREDICTED: similar to plectin 1 n=1 Tax=Ciona intestinalis RepID=UPI000180CAB5 E=0.0001 s/c=0.74 id=34% cov=32% --------------SIINPKTGETMSVQDAYMSGLIDRSQISTLQTME---------------------------------------------------- ---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 H 2 * * * * * * 0 * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 H 3 * * * * * * 0 * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 H 4 * * * 1650 * * 553 * * * * * * * * * * * * * 4 0 * * * * * * 1599 0 0 H 5 * * * * * * 1683 * * * * * * 1650 * * 1435 * * * 5 0 * * * * * * 1599 0 0 H 6 * * * * * * 1995 * * * * * * * 417 * * * * * 6 0 * * * * * * 1734 0 0 H 7 * * * 354 * * 2200 * * * * * * * * * * * * * 7 0 * * * * * * 1791 0 0 S 8 * * * * * * * * * * * * * * * 1223 807 * * * 8 0 * * * * * * 2031 0 0 H 9 * * * * * * 1757 * * * * 1380 * 2416 * * * 2915 * * 9 0 * * * * * * 2031 0 0 X 10 * * * * * * * 2713 * 1064 * * * * 1438 * * * * * 10 0 * * * * * * 1904 0 0 R 11 * * * * * * * * 925 * * * * * 3415 1397 * * * * 11 0 * * * * * * 2608 0 0 R 12 * * * * * * 2891 * * * * * * * 687 * 2035 * * * 12 0 * * * * * * 2608 0 0 S 13 * * * * * * * * 2041 * * * * * 703 2806 * * * * 13 0 * * * * * * 2846 0 0 I 14 * * * * * * * 619 * * * * * * * * * 1519 * * 14 0 * * * * * * 2846 0 0 V 15 3661 * * * * * * * * * * * * * * 1274 4235 1138 * * 15 0 * * * * * * 2601 0 0 V 16 * * * * * * * 724 * * * * * * * * * 1342 * * 16 0 * * * * * * 2601 0 0 I 17 * * * * * * * 1776 * 2538 4235 * * * * * * 1051 * * 17 0 * * * * * * 2601 0 0 H 18 * * 478 4232 * * 3735 * * * * 2700 * * * * * * * * 18 0 * * * * * * 2601 0 0 P 19 * * * * * * * * * * * * 428 * * * 1963 * * * 19 0 * * * * * * 2601 0 0 D 20 * * 1724 1672 * * * * 2118 * * 3988 * * * 3474 * * * * 20 0 * * * * * * 2601 0 0 T 21 * * * * * * * * * * * 3474 * * * 3671 266 * * * 21 0 * * * * * * 2601 0 0 G 22 * * * * * 175 * * * * * 3130 * * * * * * * * 22 0 * * * * * * 2601 0 0 R 23 2666 * 3474 3969 * * * * 1271 4474 * * * * 2818 3516 * * * * 23 0 * * * * * * 2601 0 0 E 24 * * 2150 852 * * * * 3474 * * * * 3906 * * 3969 * * * 24 0 * * * * * * 2601 0 0 L 25 * * * * * * * * * 2050 399 * * * * * * * * * 25 0 * * * * * * 2601 0 0 S 26 * * * * * * * * * * * * * * 3988 775 1503 * * * 26 0 * * * * * * 2601 0 0 P 27 2564 * * * * * * 3906 * * * * 1460 * * * * 1319 * * 27 0 * * * * * * 2601 0 0 E 28 * * * 2856 3661 * * * 3671 * * * * 3166 2710 * * * * 1184 28 0 * * * * * * 2601 0 0 E 29 * * 2451 291 * * * * * * * * * * * * * * * * 29 0 * * * * * * 2601 0 0 A 30 0 * * * * * * * * * * * * * * * * * * * 30 0 * * * * * * 2601 0 0 H 31 * * * * 2242 * 3735 * * * * * * * * * * * * 487 31 0 * * * * * * 2601 0 0 R 32 * * 3906 * * * 3538 * 1978 4159 3096 * * 2029 2510 * * * * * 32 0 * * * * * * 2601 0 0 A 33 2598 * * * * * * * 1862 3988 * * * 2539 1939 3969 * * * * 33 0 * * * * * * 2601 0 0 G 34 * * * 3538 * 420 * * * * * 2587 * * * * * * * * 34 0 * * * * * * 2601 0 0 L 35 * * * * 3988 * * 2804 * 575 4159 * * * * * * * * 3906 35 0 * * * * * * 2601 0 0 I 36 * * * * * * * 240 * 3988 * * * * * * * 3474 * * 36 0 * * * * * * 2601 0 0 D 37 * * 132 3516 * * * * * * * * * * * * * * * * 37 0 * * * * * * 2601 0 0 W 38 * * * * * * 4741 * 1963 * * * * * 1443 3906 * * 2856 2904 38 0 * * * * * * 2601 0 0 N 39 3671 * 3538 4395 * 2919 * * 3988 * * 2387 * 2643 3474 2725 * * * * 39 0 * * * * * * 2601 0 0 X 40 * * * * * * 4150 2467 3906 * 3650 * * 2439 * * 1211 * * * 40 0 * * * * * * 2543 0 0 F 41 3671 * * * 1563 * * 3969 * * * * * * * * * * * 946 41 0 * * * * * * 2601 0 0 V 42 * * * * * * * 3196 2988 829 * * * * * 3969 * 2856 * * 42 0 * * * * * * 2601 0 0 K 43 * * * 1307 3474 * 4159 * 3735 * * 3988 * 2013 * * 3969 * * * 43 0 * * * * * * 2601 0 0 L 44 * * * * * * * * * 0 * * * * * * * * * * 44 0 * * * * * * 2601 0 0 R 45 3906 4395 * 4159 * * * * * * 3671 * * 2040 3735 1207 * * * * 45 0 * * * * * * 2601 0 0 S 46 * * * 1335 * 2587 3474 * 3906 * * * * 3671 * 2856 3969 * * * 46 0 * * * * * * 2601 0 0 Q 47 * * * * * * * * * 2623 2978 * * 492 * * * * * * 47 0 * * * * * * 2601 0 0 E 48 * * * 263 * * * * * * * * * 2587 * * * * * * 48 0 * * * * * * 2601 0 0 C 49 * 502 * * * 4712 * * * * * * * * * 3331 * * * 2675 49 0 * * * * * * 2846 0 0 D 50 * * 1340 1157 * * * * * * * * * 2675 * * * * * * 50 0 * * * * * * 2846 0 0 W 51 * * * * * * * * * * * * * * * * * * 0 * 51 0 * * * * * * 2846 0 0 E 52 * * * 502 * * * * 2675 * * * * 3331 * * 4712 * * * 52 0 * * * * * * 2846 0 0 E 53 * * * 0 * * * * * * * * * * * * * * * * 53 0 * * * * * * 2846 0 0 I 54 2675 * * 4712 * * * 426 * * * * * * * * * 4033 * * 54 0 * * * * * * 2846 0 0 S 55 * * * * * * * * * * 3630 * * * * 3808 238 * * * 55 0 * * * * * * 2846 0 0 V 56 * * * * 2612 * * 1210 * * * * * * * 2993 2915 2776 * * 56 0 * * * * * * 2834 0 0 K 57 * * * 3988 2612 * * * 2292 * 2521 * * * * 2410 3921 2829 * * 57 0 * * * * * * 2834 0 0 G 58 3854 * 1900 3607 * 1123 * * * * * * * * * 4096 3988 * * * 58 0 * * * * * * 2834 0 0 P 59 * * * * * * * * * * * * 1043 * * 959 * * * * 59 0 * * * * * * 2834 0 0 N 60 * 3979 1113 4074 * * * * 3771 * * 3781 * * * 3250 * * * 2612 60 0 * * * * * * 2834 0 0 G 61 * * 3854 * * 276 * * * * * * * * 3250 * * * * * 61 87 4096 * 0 * * * 2834 1000 0 E 62 * * 3917 1565 * * 2612 * * * * 2572 * * * 2763 4101 4096 * * 62 0 * * * * * * 2834 0 0 S 63 * * * 3979 * * * 3854 3041 3250 * * 3617 * * 1804 2274 3917 * * 63 0 * * * * * * 2834 0 0 S 64 * * * * * * * * * 2521 * * * * 1896 1027 3917 * * * 64 920 1085 * 0 * * * 2834 2242 0 V 65 * * * * * * * 2487 * 3988 2171 * * * * * * 898 * * 65 0 * * * * * * 2834 0 0 I 66 * * * * * * * 1583 * 737 * * * * * * * 3921 * * 66 0 * * * * * * 2834 0 0 H 67 * * * * * * 2776 2838 * 2950 * * * 2360 * 3250 2612 3043 * * 67 99 3921 * 0 * * * 2834 1000 0 D 68 * * 0 * * * * * * * * * * * * * * * * * 68 0 * * * * * * 2834 0 0 R 69 * * * * * * * * 3620 * * * 3250 * 622 * 2612 * * * 69 0 * * * * * * 2834 0 0 K 70 * * * * * * * * 87 * * * * * 4096 * * * * * 70 0 * * * * * * 2834 0 0 S 71 * * * * * * * * * * * * * * * 1112 896 * * * 71 0 * * * * * * 2834 0 0 G 72 * * * 3620 * 122 * * * * * * * * * * * * * * 72 0 * * * * * * 2834 0 0 K 73 * * * * * * * 3988 1043 2612 * * * * 2612 3921 4101 * * * 73 0 * * * * * * 2834 0 0 K 74 * * * * * * 3607 * 2137 * * * * 534 * * * * * * 74 0 * * * * * * 2834 0 0 F 75 * * * * 1692 * * 3250 * * * * * * * * * * * 773 75 0 * * * * * * 2834 0 0 S 76 * 3250 1612 * * * * * * * * 2612 * * * 1307 * * * * 76 0 * * * * * * 2834 0 0 I 77 * * * * * * * 99 * * * * * * * * * 3917 * * 77 0 * * * * * * 2834 0 0 E 78 * * 2924 2051 * * * * 1983 * * 3607 * 2954 * 3617 3620 * * * 78 0 * * * * * * 2834 0 0 E 79 3979 * 1390 1393 * * * * 3250 * * * * * * * 3854 * * * 79 0 * * * * * * 2834 0 0 A 80 327 4101 * * * * * * * 3620 * * * * * 3988 * * * * 80 0 * * * * * * 2834 0 0 L 81 * * * * * * * 2275 * 490 * * * * * * * 3617 * * 81 0 * * * * * * 2834 0 0 Q 82 4096 * 3921 1722 * * * * 2960 * * * * 2881 2301 3250 * * * * 82 0 * * * * * * 2834 0 0 S 83 4074 3979 * 2885 * * * * 2280 2487 * * * 2612 3043 3781 * * * * 83 0 * * * * * * 2834 0 0 G 84 * * * * * 532 * * 3250 * * 4096 * * 2788 * * * * * 84 0 * * * * * * 2834 0 0 R 85 * * * * * * * 3043 3854 2280 * * * * 1934 * 1896 * * 3771 85 0 * * * * * * 2834 0 0 L 86 * * * * * * * 1246 * 1377 * * * * * * * 2370 * * 86 0 * * * * * * 2834 0 0 T 87 * * 1530 * * * * * * * * 3988 * 3250 * 2292 1830 * * * 87 0 * * * * * * 2834 0 0 P 88 * * * 4074 * * * * 1477 * 3250 3771 3781 2281 3006 * * * * * 88 0 * * * * * * 2834 0 0 A 89 1763 * * 2569 * * * * 3921 * * * * 2875 * 2838 * * * 2360 89 0 * * * * * * 2834 0 0 Q 90 4096 * 2761 2569 3921 * * * * 2612 * * * 1865 * 4101 3988 * * * 90 0 * * * * * * 2834 0 0 Y 91 * * * * 3921 * * * * 975 3917 * * * * * * 2165 * 2877 91 0 * * * * * * 2834 0 0 D 92 * * 1178 3988 * * 3979 * 3607 * 3917 * * 1820 * * * * * * 92 0 * * * * * * 2834 0 0 R 93 * * * * * * * * 2142 3979 * * * 1379 2183 3250 * * * * 93 0 * * * * * * 2834 0 0 Y 94 * * * * * * * * * * * * * * * * * * * 0 94 0 * * * * * * 2834 0 0 V 95 * * * * * * * 3771 1954 * * * * 2612 1210 * * 3781 * * 95 0 * * * * * * 2834 0 0 N 96 2476 * 2915 2121 * * * * * * * 2776 * 4074 * 1986 * * * * 96 0 * * * * * * 2834 0 0 K 97 * * * * * 372 * * 2776 * * * * 3620 * * * * * * 97 0 * * * * * * 2834 0 0 D 98 4101 * 3781 3771 * * 2569 * 2360 2612 * * * * * 2763 3041 * * * 98 0 * * * * * * 2834 0 0 X 99 * * * * * * * 1594 * 1175 2842 * * * * * 3534 * * * 99 0 * * * * * * 2790 0 0 S 100 * * * * * * 3917 * * * * * 3026 * * 1169 1449 * * * 100 0 * * * * * * 2834 0 0 I 101 3250 * * * * * * 1112 * 1210 * * * * * * * * * * 101 0 * * * * * * 2834 0 0 Q 102 * * * * * * * * * * * 3620 * 2776 * 1461 1288 * * * 102 0 * * * * * * 2834 0 0 E 103 * * * 191 * * * * * * * * * 3008 * * * * * * 103 0 * * * * * * 2834 0 0 L 104 * * * * 603 * * * * 1550 * * * * * * * * * * 104 0 * * * * * * 2834 0 0 A 105 110 * * * * 3771 * * * * * * * * * * * * * * 105 0 * * * * * * 2834 0 0 V 106 3988 * 1147 * * * * * * 1954 * 3620 * * * * * 2776 * * 106 0 * * * * * * 2834 0 0 L 107 * * * * 3096 * 4000 3553 * 1266 2257 * * * * * * 3180 * * 107 0 * * * * * * 2789 0 0 V 108 * * * * * * * 1812 * 1786 * * * * * * * 1234 * * 108 0 * * * * * * 2789 0 0 S 109 1528 * * * * * * * * * * * * * * 1131 2347 * * * 109 0 * * * * * * 2403 0 0 G 110 * * * * * 0 * * * * * * * * * * * * * * 110 0 * * 0 * * * 2040 0 0 //