HHsearch 1.5 NAME c4pjoK_ FAM FILE c4pjoK_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4pjoK_.a3m DATE Sat Jan 3 08:10:08 2015 LENG 58 match states, 58 columns in multiple alignment FILT 26 out of 30 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.5268 3.5302 SEQ >ss_dssp CCSCCHHHHTTSCCCCCCCCCCCSSCCGGGCCCSSCCCCSGGGGGGSCCGGGSCCCCC >sa_dssp EEEDDEEDDEEEEEEEEEEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEDEEEDEEEEE >ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC >ss_conf 9767688999738897876778733267022126787728999997504778787889 >Consensus TxxlPPxLlaLFxpRPPlxyxPPixxxpxxkxkxxpytGiaxfxxxFExxxxppxPxr >c4pjoK_ TQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTR >UniRef50_B3RL10(2-55:342) Putative uncharacterized protein n=4 Tax=Metazoa RepID=B3RL10_TRIAD E=9e-16 s/c=1.57 id=42% cov=95% TYCLPPHLSAFFTPKEPIKYLPPLDT-PSHLRKRRPYTGVSVFLSQFETVRNSAP--- >UniRef50_D1H8N5(42-93:504) Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1H8N5_VITVI E=9e-07 s/c=1.05 id=41% cov=88% ---LTANLLKLFEPRPPLEFKPP-----PEKRKCPPYTGMAQFASNFAEPGEPeySPPVQ >UniRef50_B0DAI5(4-51:379) Predicted protein n=5 Tax=Agaricomycetes RepID=B0DAI5_LACBS E=9e-07 s/c=1.14 id=39% cov=84% THLLPPNLLKLFAPRPPLPYARPVDK-DIDRIRTKHVNGVAQILAQLKE--------- >UniRef50_A9URV0(2-57:383) Predicted protein n=2 Tax=Eukaryota RepID=A9URV0_MONBE E=3e-10 s/c=1.18 id=40% cov=95% TAFLPPYLRDLFEPGPPIKHVPaaELQVENFERKYNAPLTGISAYLDQFETTAPPP---- >UniRef50_B6ABG2(6-53:294) RNA recognition motif. family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6ABG2_9CRYT E=1e-08 s/c=1.28 id=43% cov=84% ---LPEDLLCYFQARPPLPYIPNVKTKPHRK-----YEGIADLIHNIEGIFDKGLP-- >UniRef50_Q8ID37(6-51:423) U1 small nuclear ribonucleoprotein, putative n=7 Tax=Plasmodium RepID=Q8ID37_PLAF7 E=2e-07 s/c=1.23 id=26% cov=81% ---MPQHILILFQARPMLEFY-----KPIKKKKPKEYSGLSDFLNYFEEGEAPP---- >UniRef50_C5K5N9(4-54:877) U1 small nuclear ribonucleoprotein 70 kd, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5K5N9_9ALVE E=2e-11 s/c=1.37 id=42% cov=86% -QGMPPHLLALFCPRPPQAYeKPQIRKAPVTAHH---LTGLADFVEYFEGGEPP----- >UniRef50_B9WBK9(5-61:343) U1 small nuclear ribonucleoprotein, putative n=5 Tax=Candida RepID=B9WBK9_CANDC E=2e-10 s/c=1.18 id=34% cov=100% TEKYPPNIQKLFQPKPPFPYISPID-YPPEKRSTKPISPISSLKHEIEKYISQELPER >UniRef50_D2VDR2(1-47:202) Predicted protein (Fragment) n=1 Tax=Naegleria gruberi RepID=D2VDR2_NAEGR E=1e-09 s/c=1.37 id=36% cov=78% ----PPQIQALFTPGPPVSFLPPLDAKRRKKTKHRDLNGISEFVDKFE---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * * 0 * * * 1 0 * * * * * * 2955 0 0 Q 2 2587 * 2561 3193 * * 3654 * * * * * * 1360 * * * * * 3544 2 0 * * * * * * 3034 0 0 F 3 * 3544 * * 1241 3777 * * 2178 3654 * * * * 4113 * * * * 4059 3 0 * * * * * * 3034 0 0 L 4 * * * * * * * 4117 * 515 2529 * * * * * * * * 3857 4 0 * * * * * * 3415 0 0 P 5 * * * * * * * * * * * * 175 * * * 3129 * * * 5 0 * * * * * * 3517 0 0 P 6 3838 * * 4340 * * * * * * * 5306 305 4447 * * * * * * 6 0 * * * * * * 3517 0 0 N 7 * * 3606 * * * 2035 * * * * 1236 3945 4281 * 4779 4532 * * 4229 7 0 * * * * * * 3574 0 0 L 8 * * * * * * * 2186 * 358 * * * * * * * * * * 8 0 * * * * * * 3574 0 0 L 9 * * * * * * * * 4532 491 * * * 3328 3332 4438 * * * * 9 0 * * * * * * 3574 0 0 A 10 893 4462 4229 * * * * 4495 2010 * * * * * 4779 * * 4891 * * 10 0 * * * * * * 3574 0 0 L 11 * * * * 3593 * * * * 276 * * * * * * 4442 * * 4462 11 0 * * * * * * 3574 0 0 F 12 * * * * 0 * * * * * * * * * * * * * * * 12 0 * * * * * * 3574 0 0 A 13 1940 4602 * 2565 * * * * * * 4442 * * 1709 * 4530 3357 4779 * * 13 0 * * * * * * 3574 0 0 P 14 1543 * * * * * * * * * * * 606 * * * * * * * 14 0 * * * * * * 3574 0 0 R 15 * * * * * 3255 * * 3407 * * 4442 * * 405 * * * * * 15 0 * * * * * * 3574 0 0 D 16 * * 3187 3680 * * * * * * * * 300 * * * * * * * 16 0 * * * * * * 3574 0 0 P 17 4199 * * * * * * * * * 4495 * 150 * * * * * * * 17 0 * * * * * * 3574 0 0 I 18 * * * * 4377 * * 1814 * 1001 * * * 4602 * * * 2982 * * 18 0 * * * * * * 3574 0 0 P 19 4602 * 4094 2595 * * * * 3330 3486 * * 1481 4692 3357 4281 * * * * 19 0 * * * * * * 3574 0 0 Y 20 * * * * 1984 * 2811 * * * * * 4937 * * * * * 3987 974 20 61 4602 * 0 * * * 3574 1000 0 L 21 4534 * * * 4937 * 4779 2529 2212 2384 4971 * * * * * * 2115 * 4495 21 65 * 4495 * * * * 3574 0 0 P 22 4071 * * * * * * * * * * * 363 * 4449 4321 3898 * * * 22 136 4189 4827 1000 1000 * 0 3533 1000 1000 P 23 * * * 4127 * * * * * * * 4338 360 3735 * * * * * 4674 23 146 * 3377 * * * 0 3513 0 1304 L 24 * 3598 * * * * * 2180 * 1504 * * 4573 * * * * 1727 * * 24 74 * 4327 * * * 0 3484 0 1944 E 25 * * 1314 2858 * 4755 * * 4154 * * 3553 * 2107 4339 * * * * * 25 168 * 3187 * * * 0 3457 0 1931 K 26 3624 * 4293 * * 3986 4029 * 2054 * * 4360 3805 * 2853 * 3049 3020 * * 26 300 * 2415 * * 1065 938 3343 0 2240 L 27 2414 * * 3694 * 4444 * * 2381 1662 * * * * 4324 * * * * 2931 27 0 * * * * 721 1346 3370 0 2521 P 28 4765 * 4375 * * * * * 4210 4509 4764 4005 737 * 4127 * 4043 * * * 28 55 * 4746 * * 1297 754 3511 0 1522 H 29 4650 * 4773 4685 3342 * 2444 3390 3564 * * * 2580 * 4149 4272 * 3495 4101 * 29 0 * * * * 572 1612 3523 0 1661 E 30 * * 2719 1261 * * 4327 * 2037 * * * * * 3392 * 4564 * * * 30 57 * 4693 * * * 0 3523 0 1000 K 31 4480 4693 * 4842 * * * 4947 616 4220 * * 4730 * 3244 * * * * * 31 272 * 2541 * * 1000 1000 3450 0 1475 H 32 * * 3947 * * * 3005 4302 1787 * * 4401 * * 1458 * 4085 * * * 32 70 4401 * 0 * 1182 838 3368 1000 2196 H 33 * * * * * * 2741 * 1075 * * 4290 * * 2646 3266 * * * 4033 33 70 * 4399 * * * 0 3430 0 1738 N 34 * 4108 * 4116 * * 4123 * 4092 5114 * 2876 4199 * 3291 2264 2068 * * * 34 0 * * * * * 0 3379 0 1995 Q 35 2777 * * * * * 3151 * 2024 * * * 3525 3102 2010 4503 * * * * 35 215 4116 3631 0 * 2066 394 3379 1000 1995 P 36 5042 4250 4096 4235 4529 3683 4006 * * * * * 685 * * * * * * * 36 0 * * * * 0 * 3445 0 1999 Y 37 * * * * 4891 * * 2632 * 2504 4692 * * * * * * 3533 * 990 37 0 * * * * * * 3574 0 0 C 38 * 4176 * 4462 * 4857 * * * 4971 * 2963 * 4767 * 2590 1232 3719 * * 38 0 * * * * * * 3574 0 0 G 39 * * * * * 191 * * * * * * 3012 * * * * * * * 39 0 * * * * * * 3574 0 0 I 40 * * * * * * * 1481 * 1985 3699 * * * * * * 1680 * * 40 0 * * * * * * 3574 0 0 A 41 812 * * * * 3355 * * * * * * * * * 1588 * * * * 41 0 * * * * * * 3574 0 0 P 42 4229 * 1530 4281 * 4442 * * 3735 * * 4199 4176 2160 * 4377 * 4438 * * 42 0 * * * * * * 3574 0 0 Y 43 * * * * 951 * * 4534 * 2504 * * * * * * * * 4532 2183 43 0 * * * * * * 3574 0 0 I 44 5238 * * * * * * 2498 4017 1509 4907 * * * * 4208 * 1757 * * 44 0 * * * * * * 3527 0 0 R 45 3334 * 3144 4334 * 4585 2509 * 4481 * * 2915 * 4475 4035 2074 * * * * 45 0 * * * * * * 3583 0 0 E 46 * * 4713 2781 * * 3514 * 3419 2798 * 2711 * 2322 * * * * * 2848 46 66 4478 * 2000 415 * * 3583 1000 0 F 47 * * * * 291 * * 3040 * 4035 * * * * * * * * * * 47 0 * * * * * * 3583 0 0 E 48 3529 * 4478 472 * * * * 4035 * * * * * * 4585 4481 * * * 48 0 * * * * * * 3583 0 0 D 49 * * 1946 2257 * 3166 * * 2407 * * * * * * 4527 2850 4344 * * 49 82 * 4184 * * * * 3586 0 0 P 50 * * * 4049 * 2526 * 3831 * * * * 1388 * * * 3513 2987 * 3322 50 77 * 4261 * * 0 * 3411 0 1000 R 51 3480 * * 2996 3872 3080 * 3292 2114 * * 4119 * 4053 2760 * * * * * 51 0 * * * * * 0 3428 0 1000 D 52 3920 * 1326 4588 * * * * * * * 3865 2285 * * 3292 4119 4053 * * 52 0 * * * * 0 * 3428 0 1000 A 53 3727 * * * * * * * 3905 * * * 927 3349 * 3899 2585 * * * 53 184 3060 * 1000 1000 * * 3455 1132 0 P 54 2760 * * 3302 * 3830 * * * * * * 647 * * 4576 * * * * 54 0 * * * * * * 3399 0 0 P 55 * * 3582 3755 * * * * * 1916 * * 792 * * * * * * * 55 0 * * * * * * 3030 0 0 P 56 3586 * * * * * * * * * * * 125 * * * * * * * 56 0 * * * * * * 2909 0 0 T 57 * * * 2176 * * * * * * * * * * * * 662 2769 * * 57 0 * * * * * * 2482 0 0 R 58 * * * * * * * * * * * * * 2521 276 * * * * * 58 0 * * 0 * * * 2302 0 0 //