HHsearch 1.5 NAME c4p6iB_ FAM FILE c4p6iB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4p6iB_.a3m DATE Sat May 10 08:12:38 2014 LENG 97 match states, 97 columns in multiple alignment FILT 45 out of 49 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.4 EVD 0.3941 -1.0435 SEQ >ss_dssp CEEEEEEEESCCHHHHHHHHHHSEEEETTEEEEEECHHHHHHHHHHHHHHCCSCEEEEEEECSSSSSEEEEEESTTCCEEEEETTEEEEECCCSSCC >sa_dssp ECEACADBEEBCEEADDDADEDBEDEEEBCACCEBDDEDBECACECADEBBEEACACACCDCEDECDDCBCCCCEEEDDCCEEEDDCDDDEEEEEEE >ss_pred CCEEEEEEECCCHHHCEEEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCEEEEEECCCCC >ss_conf 9579999111991123101224553588707516997699999999984117974899983688875289974699864897179399997148789 >Consensus mpmxVivxxxvPxxlRGxLtxwlxEvxxGVyVgxxsxxVRxxlWxxvxxxxxxGxaxmvxsxxnEqGxxirtxGxxxrxxvDxDGLxLvxxxpxxxx >c4p6iB_ MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLPVGSS >UniRef50_C2KP51(1-86:97) CRISPR-associated Cas2 family protein n=1 Tax=Mobiluncus mulieris ATCC 35243 RepID=C2KP51_9ACTO E=9e-05 s/c=0.56 id=31% cov=88% --MFVILTATaVPEHLHGYLSRFLTEVNMGVYVGKITPRVADALWERCRKVGKEGSLTLVQSdVRFEQGFSVRAYSPRQHRVRCFDGL----------- >UniRef50_Q0BRF5(2-95:98) Putative uncharacterized protein n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BRF5_GRABC E=0.0003 s/c=0.49 id=36% cov=93% MPATLVITRDVEARYRGYLTSIMLELSAGVYLSpQLSSAVRERTWAVLSEWHSElrrGAIVLAWPdAKSPGGMAIRTLGDAPKEIVDADGVLLV------ -- >UniRef50_C6SPJ4(1-95:300) DNA polymerase III alpha subunit n=1 Tax=Streptococcus mutans NN2025 RepID=C6SPJ4_STRMN E=5e-30 s/c=1.38 id=35% cov=99% MPLTVITVKNAPPSLRGDLTKWMQEIATGVYVGNFNTKVREQLWSRVKDSVSNGEATLSFAYRNEIGYCFDTMNAQRK-VVDFEGIPLVQ-LPNSNN >UniRef50_Q6NEQ2(2-97:104) Putative uncharacterized protein n=1 Tax=Corynebacterium diphtheriae RepID=Q6NEQ2_CORDI E=9e-16 s/c=0.88 id=27% cov=93% ----VLYLQAAPDHLLGYVTRFLTEADTSIYVGNVSKNVASNLWIRVTEAIKDAHATMIVSDNSrEQGFSIMTTGDSTLQVLDADGLSVLASRP---- >UniRef50_C0W6T7(2-50:94) Putative uncharacterized protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6T7_9ACTO E=9e-06 s/c=1.05 id=26% cov=52% ---------------------------------------REHLWEMVQTYIGDGRALLIWSVRSEQRFAVASLG-HEREPIDIEGCTVM-------- >UniRef50_C3PF98(1-88:118) CRISPR-associated protein n=3 Tax=Corynebacterium RepID=C3PF98_CORA7 E=2e-28 s/c=1.43 id=37% cov=92% --MIVLVVTACPAGLRGDLSKWLIELTPGVFVGRPSARIRDLLWERTVELCKDGRALLVYSAANEQGLEFKTHR-HHWQPTDFDGVTLMVR------ >UniRef50_B3ENI1(1-88:105) CRISPR-associated protein Cas2 n=11 Tax=Bacteria RepID=B3ENI1_CHLPB E=5e-17 s/c=1.01 id=27% cov=91% --MVIVVANDIPPAVRGRMKLWFVEPRANVFVSGIKDSVAKKVIDYLHKHCPSESGLMVFKSCNEaPGYEIFGHGDTRKQLIELSGMQLV-------- >UniRef50_B6IWM0(1-87:98) CRISPR-associated protein Cas2, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IWM0_RHOCS E=1e-15 s/c=0.97 id=31% cov=86% --MIVICLSDTADRFHGFLRSVMLNVHPGVYVSmDLDKGSRERIWDILTRWWEaepRGMVLMIHRDtRKSMDLDLRSLGAPKRTIVDYD----------- -- >UniRef50_D0Y915(2-60:71) Putative uncharacterized protein n=1 Tax=Dehalococcoides sp. GT RepID=D0Y915_9CHLR E=8e-12 s/c=1.21 id=29% cov=61% ---------------------------------------RDELWERAINKTKESGAILqIWTDQNSQGFSSRQYGERERTFVDFEGLYLVKIDKNTST # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 3070 0 0 S 2 3708 * * * * * * * * * * * 630 * * 1850 * * * * 2 117 3687 * 0 * * * 3327 1000 0 M 3 4741 * * * 3099 * * * * 2243 656 * * * * * * * * * 3 0 * * * * * * 4175 0 0 L 4 * * * * 4964 * * 3142 * 2916 5532 * * * * 4946 1629 1536 * * 4 0 * * * * * * 4174 0 0 V 5 * * * * * * * 2658 * 4860 * * * * * * * 309 * * 5 0 * * * * * * 4282 0 0 V 6 5013 * * * 4417 * * 968 * 2499 4388 * * * * * * 2424 * * 6 0 * * * * * * 4310 0 0 V 7 5569 4586 * * * * * 2239 * 5153 5631 * * * * 4161 2211 1466 * 4530 7 0 * * * * * * 4310 0 0 T 8 3270 4198 * * * * * * * 1458 5586 * * * * * 1503 3262 * * 8 0 * * * * * * 4310 0 0 E 9 5153 * * 2362 * * * 5458 4567 * * 2792 * 4530 2717 3220 1914 * * * 9 0 * * * * * * 4310 0 0 N 10 1573 * 2046 * * * * * 3288 5708 * 2408 * 4984 5365 5167 5153 * * * 10 41 5153 * 0 * * * 4310 1000 0 V 11 3515 2469 * * * * * 3150 * * * * * * * 5590 3784 927 * * 11 0 * * * * * * 4310 0 0 P 12 3882 * * 4988 * * * * 5018 * * * 248 * * 5167 * * * * 12 0 * * * * * * 4310 0 0 P 13 2993 * 1875 3023 * 5013 * * * 4702 3944 * 2216 4518 4473 * * 4631 * * 13 0 * * * * * * 4310 0 0 R 14 3366 * * * * 2794 2546 * 4904 * * * * * 1790 2045 * * * 5464 14 0 * * * * * * 4310 0 0 L 15 * * * * 2624 * * * * 767 * * * * * * * 2432 * 3945 15 0 * * * * * * 4310 0 0 R 16 * * * * * * 3117 * * 4530 * * * * 249 * * * * * 16 0 * * * * * * 4310 0 0 G 17 * * * * * 0 * * * * * * * * * * * * * * 17 0 * * * * * * 4310 0 0 R 18 5569 * 2322 3411 1941 * 3893 * * 5708 * * * * 3041 5464 * 5398 * 2554 18 0 * * * * * * 4310 0 0 L 19 * * * * * * * * * 228 3282 * * * * * * 4530 * * 19 0 * * * * * * 4310 0 0 A 20 2311 * * * * * * * 3244 * * * * * 4586 2498 1076 * * * 20 0 * * * * * * 4310 0 0 I 21 4984 * * * * * * 4570 2446 3655 * * * 5358 1279 2138 * * * * 21 0 * * * * * * 4310 0 0 W 22 * 3382 * * 2735 * * 4988 * * * * * * * * * 2930 758 * 22 0 * * * * * * 4310 0 0 L 23 4941 4457 * * 3150 * * * * 1201 1418 * * * * * * * * * 23 0 * * * * * * 4310 0 0 L 24 * * * * 5742 * * 3514 * 1240 4272 * * 2783 * 4212 3088 3299 * * 24 0 * * * * * * 4307 0 0 E 25 * * * 60 * * * * * * * 4617 * * * * * * * * 25 0 * * * * * * 4307 0 0 V 26 4540 * * * * * * 1849 * 3320 * * 2558 * * * * 1288 * * 26 0 * * * * * * 4307 0 0 R 27 1821 * 3569 * * 5678 4014 * 3643 * * 4302 * 3887 2651 2668 4776 * * * 27 0 * * * * * * 4300 0 0 A 28 1721 * * * * * * * * * 3879 * 1370 * * 5614 2176 * * * 28 0 * * * * * * 4300 0 0 G 29 5278 * * * * 283 * * * * * 3663 * * * 4534 5035 * * * 29 0 * * * * * * 4300 0 0 V 30 * * * * * * * 4534 * 4192 5606 * * * * * 5822 211 * * 30 0 * * * * * * 4300 0 0 Y 31 * * * * 1624 * * * * * * * * * * * * * * 566 31 0 * * * * * * 4300 0 0 V 32 * * * * * * * 3361 * 5002 * * * * * 4932 4978 309 * * 32 0 * * * * * * 4300 0 0 G 33 3727 * * * * 611 3974 * * * * * * * * 2277 * * * * 33 106 3815 * 0 * * * 4300 1600 0 D 34 * * 3628 * * 3663 4496 4914 3715 * * 2231 2461 4367 3151 3739 4161 * * * 34 289 2461 * 0 * * * 4300 2205 0 V 35 5421 * * * 3233 * * 2352 * 2551 2528 * 3440 * * * * 2204 * 5553 35 0 * * * * * * 4300 0 0 S 36 * * 4054 * * * * * 3663 * * 2460 5058 * * 819 3601 * * * 36 0 * * * * * * 4300 0 0 A 37 1328 * 3663 * * 5296 5678 * 2925 * * * 3576 5035 3782 3380 4584 5553 * * 37 0 * * * * * * 4300 0 0 K 38 5002 * 5058 * * 2646 * * 3637 3607 5296 4534 * * 1307 3176 * 4914 * * 38 0 * * * * * * 4300 0 0 I 39 * * * * * * * 2367 * * * * * * * 4650 5450 428 * * 39 0 * * * * * * 4300 0 0 R 40 2566 * * * * * * * * 4920 * * * * 325 * * * * * 40 0 * * * * * * 4371 0 0 E 41 * * 1432 1564 * * 5416 * 3695 * * 4489 * 3777 * 3775 * * * * 41 0 * * * * * * 4371 0 0 M 42 4351 * * 3447 * * 6113 * 2322 3151 4628 3385 * 5587 1591 4524 * * * * 42 0 * * * * * * 4371 0 0 I 43 4982 * * * * * * 2684 * 679 * * * * * * 3606 3236 * * 43 0 * * * * * * 4371 0 0 W 44 * * * * * * * 3695 * * * * * * * * * * 116 * 44 44 5046 * 2000 415 * * 4371 1000 0 E 45 3075 * 2603 1444 * 5523 * 4798 3559 * * 4577 * 4125 * 4629 4289 5976 * * 45 0 * * * * * * 4612 0 0 Q 46 5759 * * 5978 * * * 4243 3247 4694 5847 * * 3649 1398 * * 2415 5121 3717 46 0 * * * * * * 4612 0 0 I 47 3622 3936 * * * * * 2301 * 1784 * * * * * 5121 4906 1746 * * 47 60 4624 * 0 * * * 4612 1000 0 A 48 3626 3707 4866 3598 * * 4817 4636 4012 3964 * * * 4659 4432 2776 3047 2548 * * 48 0 * * * * * * 4612 0 0 G 49 4667 * 2986 2097 * 4276 4624 * 2732 5657 * 4070 * 4021 4081 3319 4117 * * * 49 0 * * * * * * 4612 0 0 L 50 3487 4070 5493 5974 5121 5511 3369 * 4844 3475 5416 4121 * 5487 4694 3634 4866 3948 2306 5847 50 0 * * * * * * 4612 0 0 A 51 3309 3561 * * * 4432 2945 2150 * * 4761 * 4624 * * 4323 3968 2861 4245 5007 51 106 3823 * 1780 497 * * 4612 1740 0 E 52 5555 * * 2542 * 2112 * * 1822 * * 5007 4086 4038 5423 3565 4866 * * * 52 170 3392 5981 1728 519 * * 4612 1746 0 E 53 * * 2075 1996 * 5513 * * 4552 * 4322 4037 4236 4968 3238 2912 6312 * * * 53 88 4077 * 1992 418 0 * 4393 1459 1000 G 54 3951 * * 4817 * 388 * * * * * * * * 5065 3239 * * * * 54 0 * * * * * * 4612 0 0 N 55 2629 * 4720 3604 * 3008 4798 * * * 4760 4022 * 5555 2298 2091 * * * * 55 0 * * * * * * 4612 0 0 V 56 1093 4472 * * 4866 4146 * 3699 * 3239 * * * 5065 * * * 2454 * * 56 0 * * * * * * 4612 0 0 V 57 5499 * * * * * * 3703 * 2269 3432 * * * 5065 * 1657 1977 * * 57 0 * * * * * * 4612 0 0 M 58 5083 5802 * * * * * 5474 * 1276 1245 * * 5413 * 5025 * 4610 * * 58 28 5702 * 0 * * * 4718 1000 0 A 59 2655 * * * 4610 * * 2136 * 3783 * * * * * 4061 4267 1365 * * 59 0 * * * * * * 4718 0 0 W 60 * * * 5566 2894 * 3309 * 4610 * * 5760 * 4424 * * * 4892 1616 1850 60 43 5083 * 0 * * * 4718 1000 0 A 61 3222 * * * * * * * 4092 * * 5474 2938 5389 2857 1333 3276 5713 * * 61 115 3712 * 779 1262 * * 4718 2063 0 T 62 2110 3729 2111 * * * * * * * * 5232 5083 5389 * 2492 3548 4149 * 4016 62 79 4223 * 0 * * * 4718 1728 0 N 63 6084 4117 3469 * * 4918 4858 * 3750 * * 1735 3936 4708 1944 4993 * * * * 63 39 5232 * 0 * * * 4718 1000 0 T 64 4067 * * 3005 4424 5389 4285 * 5049 * * 1258 * * * 2589 3654 * * * 64 131 3529 * 0 * * * 4718 1727 0 E 65 3756 * 5440 488 * * * * * * * * 4353 * 4993 3663 5025 * * * 65 52 4811 * 0 * * * 4718 1000 0 T 66 * * * * * 3598 * 3666 * 4558 5049 * 2826 983 * 3683 4608 * * * 66 35 5388 * 0 * * * 4718 1000 0 G 67 * * 5049 * * 234 5534 * * * * * * * 3352 * * * * * 67 0 * * * * * * 4718 0 0 F 68 * * * * 1543 3955 5380 5083 * 2736 4674 * * * * * * 4195 5566 1868 68 0 * * * * * * 4718 0 0 E 69 3089 5541 2706 2288 * 3814 * 5413 4633 * * 3966 * 3197 * 2678 * 4683 * * 69 96 3955 * 0 * * * 4718 1437 0 F 70 6096 * * * 1574 * * 1565 * 3788 5869 * * * * 5702 * 2435 * 5819 70 35 * 5389 * * * * 4718 0 0 Q 71 3343 5656 5508 3774 3691 * * * 3342 3788 4874 5708 * 4401 1193 * * * * * 71 0 * * * * 0 * 4692 0 1000 T 72 4424 4993 * * 5573 3707 5388 4962 * 5232 4858 * * 5702 * 3309 958 3789 * * 72 0 * * * * * * 4718 0 0 F 73 4124 * * * 4869 * 2076 3598 * 1971 5541 * * 6788 * * 2903 4445 4781 3519 73 23 * 5976 * * * * 4718 0 0 G 74 * * * * * 435 4487 * * * * 3735 * * 3414 4417 * * * * 74 76 * 4287 * * 0 * 4720 0 1000 L 75 2898 * 1586 3979 * * * 5067 5543 4310 * 5526 3275 * 5450 2952 3974 * 5223 * 75 0 * * * * 0 * 4607 0 1625 N 76 3747 * 3976 5534 * * 3199 * * 5573 * 3180 2045 3748 3293 4282 2942 * * * 76 168 * 3183 * * * * 4718 0 0 R 77 4243 5353 5897 4246 * 5239 4360 * 4135 * * * 3191 3579 1576 3437 3621 * 5716 * 77 0 * * * * 0 * 5045 0 2228 R 78 * * * 5474 * * 4424 * 2297 4892 * * * * 864 * * * 2792 * 78 89 * 4056 * * * * 4718 0 0 T 79 * * 5761 1794 * * 5856 4115 5906 4987 5288 * 4790 2502 2886 5429 2753 5337 * * 79 36 * 5337 * * 0 * 4646 0 1760 P 80 * * * * 5652 * * 3109 * 1884 5648 * 1835 5453 * * * 1888 * * 80 0 * * * * 0 * 4660 0 1000 V 81 * * * * 4832 * * 2164 * 3860 4800 * * * 4408 * 3733 1057 4879 * 81 0 * * * * * * 4671 0 0 D 82 * 4408 577 2601 * * * * * * * * * 5627 * 5375 * 4879 * 4669 82 0 * * * * * * 4671 0 0 L 83 3405 4198 * * 1484 * 4599 4912 * 2828 3618 * * * * 5649 * 4570 5479 3155 83 0 * * * * * * 4671 0 0 D 84 * * 472 2330 * * * * * * * * * * * 3644 * * * * 84 0 * * * * * * 4671 0 0 G 85 * * * * * 0 * * * * * * * * * * * * * * 85 0 * * * * * * 4619 0 0 L 86 * 5722 * * * * * 3210 * 688 3185 * * * * * * 3087 * 5351 86 0 * * * * * * 4619 0 0 R 87 * * * 5328 * * 4928 5457 4089 2746 * * 2733 2988 5756 4050 2697 3882 3139 5596 87 0 * * * * * * 4613 0 0 L 88 * * * * 5342 * * * * 203 * * * * * * * 3231 * * 88 0 * * * * * * 4613 0 0 V 89 4996 * * * * * * 3390 * 3737 2165 * * * * 5046 4461 1001 * * 89 131 * 3521 * * * * 4526 0 0 S 90 1517 * * * * * * * 3290 * 2330 * * 4088 * 1989 * 4686 * * 90 96 * 3955 * * 0 * 3954 0 1464 F 91 * * * * 1929 * 4157 4000 * * 4623 * * * 1479 3838 3304 * * 4369 91 0 * * * * 0 * 3947 0 1000 L 92 * * 3289 * * * 3307 * * 1727 * * * * 2356 3870 2876 3400 * * 92 0 * * * * * * 3691 0 0 P 93 * * * * * * * * 2326 * * * 321 * * * * * * * 93 0 * * * * * * 3592 0 0 V 94 * * * * * * * * * * * 577 * * * * 2568 2635 * * 94 0 * * * * * * 2928 0 0 G 95 * * * 2774 * 2475 * * * * * * * 1529 * 2736 2496 * * * 95 0 * * * * * * 2846 0 0 S 96 * * * * * * * * * * * 2469 * * 2238 719 * * * * 96 0 * * * * * * 2712 0 0 S 97 * * * * * * * * * * * 2469 * * * 1349 1228 * * * 97 0 * * 0 * * * 2712 0 0 //