HHsearch 1.5 NAME c4p1mA_ FAM FILE c4p1mA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4p1mA_.a3m DATE Sat Jul 19 11:50:27 2014 LENG 106 match states, 106 columns in multiple alignment FILT 106 out of 267 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.9 EVD 0.4106 -1.0138 SEQ >ss_dssp CEEEEEETTEEEEEECCGGGHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC CCCCCC >sa_dssp EDBDBEBCEEEDEDEBCEEEDEECDEDBDDCCDCAEDBDEECECEECDDADECADECDDEDEDDDDDEEEEEDEDDDEDEDDEDDEEDEDEEDECDEEEE EEEEEE >ss_pred CCEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHCC >ss_conf 9158898677664047877899999999999999999998759999999999999999999999999999999999999999999999999567453114 553049 >Consensus qxVxVxIxGrxYxixcxxxeeexlxxaAxxvdxkixxixxxxxxxxxxxxxvlaALnlaxelxxxxxxxxxxxxxixxxixxLxxxlexalxxxxxxxxx xxxxxx >c4p1mA_ QPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKERTRVTNTEQLVFIAALNISYELAQEKAKTRDYAASMEQRIRMLQQTIEQALLEQGRITEK TNQNFE >UniRef50_Q3A216(3-91:100) Putative uncharacterized protein n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A216_PELCD E=1e-09 s/c=0.72 id=18% cov=85% QAVQVTILGQQYTIK-SAMDPAEVCRVAEFVNEKIAEVVAASRAVDTLNTAVLALLNVGEAYLRLRDATQAREESLNVQLHDLVARLEKA---------- ------ >UniRef50_A8SAV2(4-110:154) Putative uncharacterized protein n=2 Tax=Faecalibacterium prausnitzii RepID=A8SAV2_9FIRM E=3e-07 s/c=0.53 id=12% cov=98% --VRVNIAGTPYAIATTD-SEKYILGLAKKLDEDITKLLDTNDNLSVTKAAVFCAMDYLDEYRKSTGSAENMRSQIQDYIADAARaklAEDKALAENAVL RREAAALRE >UniRef50_A4CMW4(6-98:98) Putative uncharacterized protein n=12 Tax=Bacteroidetes RepID=A4CMW4_9FLAO E=5e-06 s/c=0.56 id=19% cov=88% --IKLSIADRVYPLTIDPAQEEGLRKAAKNIEQLAKKFEQNYAVRDKQDVLAMCALQFASKIEQGGIEKQEDNQEVVERLRSLDSLIASTLSAQ------ ------ >UniRef50_C6RQX7(7-78:94) Cell division protein ZapA n=17 Tax=Acinetobacter RepID=C6RQX7_ACIRA E=0.0004 s/c=0.64 id=21% cov=69% --VELRLIEQTFRLATTADKKEELERAGQLLNEKFHEIRRNAPRTEHNKLVIMVALSLMQEVLTLNKSLQEYAH-------------------------- ------ >UniRef50_A0NNE8(3-116:126) Putative uncharacterized protein n=2 Tax=Labrenzia RepID=A0NNE8_9RHOB E=6e-12 s/c=0.63 id=16% cov=98% --ITVTINGKSFRMACDDGEEERLMGLAARFDGWINDLRGAFGEIGDQRLTVMAGIMAADQLSELERKVAGLEEQLadarKQQVAALDNMsqneeeLSRA VNTAAARIESLADGL- >UniRef50_C7G7G3(8-109:156) Putative repeat organellar protein n=3 Tax=Bacteria RepID=C7G7G3_9FIRM E=2e-06 s/c=0.53 id=17% cov=72% ---EVVIGGKVYTLS-GYESEEYLQKVAVYINGKLNEFdsIEGYQRFPADMKATLLQLNIADDYFKAKAQAEKLEREIEAK------------------- -------- >UniRef50_B3QMG6(4-88:89) Putative uncharacterized protein n=5 Tax=Chlorobiaceae RepID=B3QMG6_CHLP8 E=8e-05 s/c=0.57 id=19% cov=59% -------------------------KAAGDVDGVMRRFAAKAPDLEPKKLAVLAAIQFA----EKKNELEEELSQLRQKMARVNEFIEQNL--------- ------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * 1723 * * * * 3259 * * * * 755 * * * * * * 1 0 * * * * * * 4871 0 0 P 2 3306 * * * * * 4442 * 3083 * * * 2279 3277 3209 2077 * 3635 * * 2 0 * * * * * * 5386 0 0 V 3 * * * * * * * 1433 * 2750 * * * * * * * 1056 * * 3 0 * * * * * * 7113 0 0 D 4 * * 3406 2247 * * 6332 6503 3057 6778 * 2892 * 4556 3993 3048 2643 5558 * * 4 18 6371 * 0 * * * 7163 1000 0 I 5 6557 * * * 6233 * * 1491 6567 2718 * * * * * * * 1127 * * 5 0 * * * * * * 7329 0 0 Q 6 5757 * * 2919 * * 6162 6633 2815 5662 6650 3089 * 3537 3691 3483 2324 3855 * 6150 6 0 * * * * * * 7323 0 0 I 7 * * * * 5408 * * 548 * 3118 6622 * * * * * * 2580 * * 7 0 * * * * * * 7323 0 0 F 8 2591 5392 5145 * 4066 3807 * 5429 * 1637 3573 3145 * 6042 6015 6049 * 6139 * 4348 8 0 * * * * * * 7323 0 0 G 9 * * 2721 4659 * 505 6597 * * * * 4046 6257 * * 6792 6465 * * * 9 0 * * * * * * 7323 0 0 R 10 6597 * 5528 5147 * * 6203 5586 2127 * 5673 5832 * 2311 1488 4474 6363 5378 * * 10 0 * * * * * * 7323 0 0 S 11 4944 * 3175 2867 6389 6927 5341 5435 3904 6672 6581 4928 3811 3823 3899 3422 2950 3803 * 5126 11 0 * * * * * * 7323 0 0 L 12 * * * * 2617 * 5365 4584 * 3517 * * * 6633 * * * * * 570 12 0 * * * * * * 7323 0 0 R 13 5111 7044 5248 5301 * * 5757 6706 3840 5479 * 5200 2734 3431 2621 2922 2359 4972 * * 13 0 * * * * * * 7323 0 0 V 14 * * * * 3781 * * 1524 * 1584 3979 * * * * * * 2580 * 6026 14 29 * 5632 * * * * 7323 0 0 N 15 2042 * * 5288 * 3820 5647 * 2611 5825 * 3458 6177 6137 3088 3512 3786 4727 * 5321 15 136 * 3477 * * 0 * 7322 0 1636 C 16 4755 1120 * * * 3958 * 3304 * * * * * * * 3568 2556 3592 * * 16 44 * 5048 * * 0 * 7288 0 3680 P 17 5439 * 2948 3635 6455 3039 6514 * 4355 * * 5539 2024 4298 4080 2741 4408 * * * 17 48 * 4939 * * 572 1612 7312 0 2185 P 18 2127 * 2277 2953 * 6514 6922 6145 5841 6871 * 5784 2262 6756 4143 4776 6075 5504 * 6568 18 79 * 4237 * * 397 2055 7326 0 2487 D 19 6324 * 2756 2095 * 1660 4516 * 4511 * 6468 6170 5459 * 6446 2918 6671 * * * 19 29 * 5636 * * 493 1788 7268 0 3262 Q 20 6565 * 2495 1322 * 5732 6340 * 5110 * * 4555 4893 2779 * 3106 * 6157 * * 20 52 * 4823 * * 456 1885 7356 0 2284 R 21 4895 6423 * 796 * * 5738 * 4164 * * * 2958 4884 3107 7290 6538 6886 * * 21 58 * 4665 * * 0 * 7348 0 2892 D 22 2585 * 3338 1229 * 5021 5753 6557 5503 5585 * 4506 4351 4798 4939 5859 6132 6370 * * 22 19 * 6232 * * 0 * 7338 0 2719 A 23 2914 * 4683 3427 6487 6391 2910 5416 4611 3253 6722 7072 * 6053 3508 4277 3674 6515 * 2743 23 34 * 5406 * * 0 * 7348 0 1000 L 24 5521 * * * * * * 3209 * 876 5046 * * * * * 5604 2032 * 5071 24 0 * * * * 0 * 7328 0 1790 N 25 4637 6584 * 3370 6506 6617 5128 4052 3606 2801 5939 4816 * 2675 1883 6663 * * * 5176 25 0 * * * * * * 7345 0 0 Q 26 3189 * 4782 2076 6708 5089 5863 * 2684 4610 * 4985 * 3124 3226 3835 6759 5495 * 6717 26 0 * * * * * * 7346 0 0 A 27 1111 * * * 6333 * * 3962 * 2155 * * * * * 5248 5327 2437 * * 27 0 * * * * * * 7346 0 0 A 28 546 6460 * 4711 * 3857 * * * 6271 5535 * * * * 5561 6256 2970 * * 28 0 * * * * * * 7350 0 0 D 29 2685 * 2904 2865 * 4352 5777 6256 2657 * * 4432 * 4988 3671 2987 5644 4950 * * 29 0 * * * * * * 7350 0 0 D 30 6712 6578 6162 4022 3339 6935 6674 5201 4655 2309 3308 4453 * 3651 5083 4660 * 5099 * 2362 30 0 * * * * * * 7350 0 0 L 31 * 6661 * * 3806 * * 2702 * 1433 * * * * * * * 1342 * * 31 0 * * * * * * 7350 0 0 N 32 5276 * 1307 3087 * * * * 6271 * * 1444 * 4529 * 6176 6072 * * * 32 0 * * * * * * 7350 0 0 Q 33 4058 * 3370 1907 6257 4227 5528 6301 3302 * * 5702 * 3211 3891 3628 3718 6081 * 6950 33 0 * * * * * * 7350 0 0 R 34 4709 * 6426 3556 6979 6644 5279 * 1344 4067 6081 5698 * 3661 2243 6687 6674 7470 6949 6584 34 0 * * * * * * 7350 0 0 L 35 3868 6081 * * 4869 * * 1928 * 2053 2147 * * * * * * 2971 * 5296 35 16 * 6460 * * * * 7350 0 0 Q 36 3386 5766 4880 3574 * * 6464 6170 2873 4212 5168 2954 * 3420 2740 4321 3696 5317 * * 36 0 * * * * 0 * 7343 0 1000 D 37 3331 * 3282 1859 * 5423 4393 * 3224 5349 * 4399 * 2724 4873 5019 5403 4952 * * 37 15 6555 * 1000 1000 * * 7350 1000 0 L 38 3805 * * * 3775 * * 1767 * 2383 4210 4884 * * * 6641 6706 2605 * 3351 38 45 6660 5564 1000 1000 * * 7350 1000 0 K 39 2991 * * 4253 6271 4079 * 5903 2243 3735 6734 * * 5134 1948 3208 5018 6574 * * 39 19 * 6280 * * 888 1121 7335 0 1547 E 40 3593 * 3379 2609 * 3799 7080 6448 3233 * * 3471 * 3393 3074 2920 6150 * * 6683 40 0 * * * * * 0 7321 0 1684 R 41 2864 * 4805 5135 * 3259 4657 * 2385 6546 7843 3556 * 3333 3804 3073 4566 5017 * * 41 93 5003 5012 871 1141 * 0 7321 2340 1684 T 42 2645 * 6182 6880 3341 2718 5736 5064 5372 4313 6928 3167 6648 * 7063 3687 3723 4856 * 3067 42 13 * 6839 * * 719 1349 7305 0 3112 R 43 4093 * 5305 6732 * 2249 5240 * 2843 * * 5341 2167 5059 3079 4100 4455 6134 * 5908 43 43 5430 7324 554 1649 590 1576 7313 1730 2299 V 44 3662 * 6093 5209 * 3090 6361 3196 4142 5671 6082 2902 * 4991 3726 3509 3473 3069 * 6423 44 24 6685 7183 0 * 905 1101 7364 1000 1694 T 45 3226 6647 6179 * 4459 5263 * 3500 4266 1799 5092 6624 5764 5046 4597 5482 3646 3042 * 5883 45 0 * * * * 914 1092 7362 0 1451 N 46 3582 * 2119 4311 * 2647 * 6703 6292 6540 * 3736 4034 5055 6771 2211 4266 * * * 46 12 * 6878 * * * 0 7345 0 1000 T 47 3927 * 4044 3309 5314 5475 6459 4055 3598 4242 6608 5024 3750 4673 5155 3502 2425 4229 * 7005 47 0 * * * * 0 * 7344 0 1725 E 48 5722 * 2833 1862 6440 * 6839 5480 5430 3845 6502 3766 6616 2700 * 4228 3872 4310 * 6712 48 0 * * * * * * 7350 0 0 Q 49 5864 * 3120 4369 * 5883 5466 * 2381 6907 5323 4811 6257 3650 1650 5432 4177 5669 * 6712 49 20 6213 * 2000 415 * * 7350 1000 0 L 50 2376 * * * * * 6947 2591 4962 1813 4977 5196 * 5845 4635 7106 4587 2953 * 5509 50 56 4703 * 626 1506 * * 7350 2650 0 V 51 1547 * 6712 6493 4386 * * 4189 * 1611 7230 6555 * * * 4542 4355 3609 5949 * 51 0 * * * * * * 7350 0 0 F 52 3516 * * * 6908 * * 2229 * 2401 4641 * * * * 6172 4191 1348 * * 52 0 * * * * * * 7350 0 0 I 53 6578 * * * 4149 * * 4110 * 991 1583 * * 6213 * * * 5322 * * 53 0 * * * * * * 7350 0 0 A 54 995 3897 * * * 5298 * 5248 * 5056 * * * * * 6415 2521 2613 * * 54 0 * * * * * * 7350 0 0 A 55 551 4803 * * * 3710 * * * 3872 * * * 6660 * 3663 6256 4843 * * 55 0 * * * * * * 7350 0 0 L 56 * * * * 3959 * * 3189 * 545 3725 * * * * * * 4255 * 6301 56 0 * * * * * * 7350 0 0 N 57 * * 3420 5098 5555 * 5404 6656 4475 4679 4327 1031 * 3446 5939 4262 4976 7086 * * 57 12 * 6958 * * * * 7358 0 0 I 58 4933 5537 * * 4098 * * 1814 * 1229 4128 * * * * * 5061 3985 * 5260 58 16 * 6524 * * * 0 7356 0 1000 S 59 807 3757 * * * 5445 * 5430 * 4280 4860 * * * * 3300 3558 4802 * * 59 67 6152 4987 0 * 950 1052 7319 1000 1515 Y 60 5445 * 1553 3299 3983 5735 2539 * * 6125 5322 4822 * 6387 6402 3825 * 4835 * 3707 60 0 * * * * * 0 7297 0 2460 E 61 5578 * 2102 1057 * 6560 6578 * 4500 5854 * 6410 5314 4419 4906 4690 6215 * * 6195 61 0 * * * * 840 1180 7297 0 2460 L 62 * 5315 * * 5869 * 6295 6380 4058 893 5596 4461 * 4926 * 4616 6449 4499 * 2845 62 0 * * * * * 0 7324 0 1430 A 63 3960 * 5608 4443 2808 * 5728 3596 6606 1489 4824 6701 * 5217 5080 4563 4911 4053 * 5558 63 30 6837 6424 2807 222 0 * 7324 1000 1430 Q 64 4250 * 3304 2649 * 4823 5597 5224 2514 4717 * 5788 * 2693 3624 4209 5023 4260 * * 64 0 * * * * 0 * 7371 0 1000 E 65 2382 6367 6711 3082 6672 4262 * 4143 4818 1711 4315 5439 * 5663 5284 4468 5307 5648 * * 65 26 6662 7021 2807 222 * * 7346 1000 0 K 66 6808 * 5339 3344 * 4801 5072 * 2191 4988 * 3575 5843 2757 2121 4397 5306 * * * 66 12 6859 * 1585 585 0 * 7381 1000 1000 A 67 4806 * 3072 2868 * 5475 6586 4948 2500 4726 * 3254 6617 3451 3066 3741 5169 * * * 67 13 * 6797 * * * * 7346 0 0 K 68 3950 * 4192 2275 * 5644 * 4411 2678 5343 * 6802 5175 2968 3068 3599 4308 6740 * * 68 0 * * * * * 0 7373 0 1000 T 69 3519 6739 6935 5537 4842 4935 4304 3848 4330 2218 5484 3112 6927 4240 4237 5318 3372 4981 * 5967 69 60 5074 6520 3049 186 0 * 7370 2364 1000 R 70 2712 * 3091 2364 * 4435 4900 6150 4093 6596 * 4817 5662 2725 4583 3744 4765 * 6222 * 70 19 * 6258 * * * 0 7362 0 1000 D 71 4135 * 4251 2447 4888 3821 5786 6018 3851 5633 * 4752 5159 2912 2915 4010 3874 5736 * * 71 38 5946 6659 3024 189 * 0 7348 1610 1738 Y 72 3803 * 2810 3053 6489 6709 6629 4427 6467 2442 4518 4930 5727 4066 4913 5501 4217 6910 * 3057 72 25 7072 6703 2000 415 1501 629 7345 1000 2306 A 73 3452 5429 6625 3081 * 5202 * 4179 3919 3417 4554 4977 4964 2665 3299 4396 4638 4018 * * 73 78 5113 5401 771 1273 598 1559 7356 2410 2282 A 74 3046 * 3433 2589 * 3798 4758 * 3754 5310 * 5483 5260 2618 4312 3259 5357 * * 5545 74 60 4615 * 2252 340 * 0 7336 2698 2241 S 75 3177 * 3548 2825 6088 5338 6582 5461 3805 4479 5452 5580 5070 3332 3143 3361 4132 4901 * * 75 31 6380 6704 3322 152 0 * 7320 1000 2241 M 76 5888 6591 6506 4827 4465 * 6365 2289 * 1782 4724 4764 * 5516 * 5308 5739 2186 * 6214 76 42 5663 6851 2580 264 * 0 7378 1656 1000 E 77 3838 * 2892 2372 5197 5607 * * 2706 * * 3591 * 2801 4690 4445 3876 6412 * 6632 77 0 * * * * 0 * 7381 0 1755 Q 78 2826 * 3845 2457 6638 5313 6985 * 5000 6388 * 4747 6505 2048 3370 4219 3840 6555 * * 78 25 5849 * 2597 261 * * 7381 1594 0 R 79 4378 6535 5658 5527 6351 6212 6367 5484 2101 3118 * 6456 6638 2987 1902 7189 6646 4954 * 5216 79 57 4687 * 2287 331 * * 7343 2722 0 I 80 3920 * 4844 4894 * * * 1177 6513 2539 5739 * * 5552 5258 3431 5631 4033 * * 80 0 * * * * * * 7305 0 0 R 81 2894 * 4501 1866 * * 4537 5134 4151 6710 6013 5010 * 2762 3598 3377 5337 6360 * * 81 15 6572 * 1585 585 * * 7305 1000 0 M 82 2791 * 3293 2917 6633 4924 4439 * 3245 4055 6678 5684 * 3268 3229 4009 4183 6720 * * 82 22 * 6070 * * * * 7301 0 0 L 83 5285 6401 * 6784 4798 * * 3551 6374 599 3787 * * * 6325 * 6327 4304 * 6370 83 37 6284 6323 3322 152 * 0 7239 1000 1000 Q 84 3811 * 2840 2782 * 6593 * 3156 3920 3980 * 2979 * 3215 6397 4029 4810 4366 * * 84 0 * * * * 939 1063 7224 0 1800 Q 85 4224 6369 4508 2701 * 4332 6317 6273 3198 * 4984 3913 * 2764 2843 3483 3868 * * 6631 85 23 5979 * 1585 585 * 0 7233 1000 1000 T 86 2807 * 4542 3717 6979 * 6419 5139 3472 3256 3924 * * 4818 2045 5385 3571 4906 * 6606 86 14 6664 * 2585 263 0 * 7233 1000 1000 I 87 3540 6255 * 5231 * * * 2001 * 1254 4339 * * 6115 5889 * 6740 3121 * * 87 0 * * * * * * 7269 0 0 E 88 3707 * 1530 1469 * * * * * * * 5237 * 4379 * 3329 * 5383 * 5791 88 0 * * * * * * 7256 0 0 Q 89 3216 * 4205 2305 * 4419 * * 3638 4296 6228 3929 * 2776 3729 3233 5269 6406 * 6239 89 0 * * * * * * 7238 0 0 A 90 894 6123 5745 * 4343 4893 * 5139 * 6305 * 6451 * * 4255 3705 3455 4152 * 5872 90 25 * 5846 * * * * 7020 0 0 L 91 5544 * * 3592 * * * 2930 4551 730 4570 * * * 4668 * * 4735 * * 91 0 * * * * * 0 6819 0 1000 L 92 1594 * 5328 4469 * 3512 5429 * 3019 5477 * 4732 * * * 1961 5499 5295 * * 92 0 * * * * 0 * 6604 0 1000 E 93 4795 * 3352 1236 * * 4224 * 4176 5072 5139 3883 * 5205 3267 * 3723 * * * 93 48 4926 * 2000 415 * * 6316 1000 0 Q 94 3315 5055 4268 1934 4916 * 3976 * * 3893 * 4725 4287 2852 3887 5163 4832 * * 4891 94 0 * * * * * * 6157 0 0 G 95 1299 * * 3008 * 1346 * * * * * * * * 4770 4671 * * * * 95 0 * * * * * * 5632 0 0 R 96 3630 * 4756 * * * * 4556 1898 * * * * 1943 2223 * 4421 4312 * * 96 0 * * * * * * 5502 0 0 I 97 3502 * 4274 * 4265 * * 3356 * 1316 * * * * 3262 4405 * * * 2669 97 0 * * * * * * 5261 0 0 T 98 * * * * * 2521 * 2990 1417 * 4124 3982 * * 3838 * 2891 * * * 98 0 * * * * * * 5019 0 0 E 99 * * 4066 915 * * * * 2288 * * 3885 3943 * 3786 * * * * * 99 0 * * * * * * 4944 0 0 K 100 * * * 2657 * * * * 1076 * * * * * 2205 2735 * * * * 100 0 * * * * * * 4762 0 0 T 101 3252 * * 2417 * * * 3369 * 3316 * 1734 * * * * 2253 * * * 101 0 * * * * * * 4294 0 0 N 102 1299 * * 3314 * * * * * * * 1696 * * * 2439 * * * * 102 0 * * * * * * 4294 0 0 Q 103 3252 * 1734 1386 * * * * * * * * * 2238 * * * * * * 103 0 * * * * * * 4294 0 0 N 104 * * * * * 3022 * * * 450 * 2788 * * * * * * * * 104 0 * * * * * * 3907 0 0 F 105 * * * 2898 1679 * 2854 * * 1906 * * * * 2752 * * * * * 105 0 * * * * * * 3681 0 0 E 106 * * * 243 * * * * * * * * * 2691 * * * * * * 106 0 * * 0 * * * 3429 0 0 //