HHsearch 1.5 NAME c4ozlA_ FAM FILE c4ozlA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4ozlA_.a3m DATE Sat Jul 5 08:19:33 2014 LENG 104 match states, 104 columns in multiple alignment FILT 103 out of 204 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.1 EVD 0.4078 -0.6796 SEQ >ss_dssp CCGGGGSEEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEECCCCCEEEEEEEEEESSSCHHHHHHHHHHHHCCSSTTCCEEEEEEECCCBCTTTCCBS GGGC >sa_dssp EECCEDCBCCACACACDECCDDADDBADEDECEEDEDDECECEEEEEEEBBCACADBBECDBEDABDBADECBEDEEEDCDECDDDECEECEDEEDDDDC CEBD >ss_pred CCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHEEEECCCCCC CCCC >ss_conf 9988776089999987555899999999789980679999982567674269999833787899999999860688798669999883304630258867 2239 >Consensus xxxxdxxMKxIxaIVrxxxxxxVxxALxxxGxxgxTvxxvxGxGxxxxxKxxixivvxdxxxexvvxaIxxxaxtgxxGdGkIfVxpVxxaxxIrtgexg xxax >c4ozlA_ DLPNDGGIKLVMAIIRPDKLADVKTALAEVGAPSLTVTNVSGRGSDLHQKVKVECVVADTPAEDVADAIADAAHTGEKGDGKIFILPVENAIQVRTGKTG RDAV >UniRef50_Q2Y8I3(1-105:112) Nitrogen regulatory protein P-II (GlnB, GlnK) n=2 Tax=Proteobacteria RepID=Q2Y8I3_NITMU E=2e-19 s/c=0.92 id=26% cov=92% -------MKEIRAYIEPFMLSKVTQALLEIpDFPGMSVSDCHGFGRErvadssfdpYMPKKRIEIFASDEQVDNIFSTVMQTANTYQDGAGKIYIIDVSG SGNISSGERHQE-- >UniRef50_A0L2X6(28-133:133) Nitrogen regulatory protein P-II n=2 Tax=Gammaproteobacteria RepID=A0L2X6_SHESA E=5e-15 s/c=0.77 id=25% cov=89% -------MKQITAFIHHVRSADVIDALRDAGYKNLSLLDIKGTLKPLGERelaysaeagvviseVQLSLVCDDNQVDEVTTIIRKTGKIGPNISGWVYVT PVEQALPIGGKEN----- >UniRef50_A9A353(1-105:151) Nitrogen regulatory protein P-II n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A353_NITMS E=3e-11 s/c=0.66 id=26% cov=87% -------MKKIEAVIRRKNFPTIKSHLHIIGSYIIDKrnledsniydeskgSRVGSTGLKSIPLAKIEMVVPDKDARKVVEMISTNSGLSATHGGKIFVS EMEEVVDMET-------- >UniRef50_A6D3J0(4-89:113) Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D3J0_9VIBR E=4e-07 s/c=0.65 id=25% cov=76% ---------KISVILQEQKLEDIERILSEEGVRDFTIYQVQGRGSHanlidthaLNTHYQLDIFIGHNHTQTLVGALLDTLCVSQEGNG------VTSVI R----------- >UniRef50_A6BDF8(121-226:232) Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A6BDF8_9FIRM E=6e-10 s/c=0.61 id=24% cov=93% ----DTDYELLVAIANQGYIDTVMDAARSAKAGGGTVIHAKGTGMELAkkylgvslveEKEVILIVTKSREKNQIMKAIMEQAGLDSKERTIVFSLPVTS VAGIRMLEED---- >UniRef50_B9ZJT5(5-99:116) Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJT5_9GAMM E=0.001 s/c=0.47 id=20% cov=83% ---------LLAAVVPRNRADRAIETVRREGAAGLTLLEGQGIAqlrrspimdlKDSAARTVLLMVLEASIAERLLKCLDEELALSEVGNGFAFTLPIKD IAGI---------- >UniRef50_Q0F3G7(1-102:102) Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G7_9PROT E=3e-05 s/c=0.49 id=24% cov=63% -------MKMLNLVTHANMQHQLSDTLRDIEqVSGFTFTPVQGHGSHvdtdpflssrdrvvgYTPRIKVEVLLADDDVEPVLAHLREA------------ -------------------- >UniRef50_Q2BA90(3-103:222) PII family protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BA90_9BACI E=0.0004 s/c=0.45 id=19% cov=88% --------KLFIAIVKKGTAKKAVRLARGSGLAAAATVYARGIGKNEqtsflgleinHEKEVILMLIKEESAEEVITEVSSHLHFERPGTGLGLLINING FIGVQSPE------ >UniRef50_C0GDL5(1-107:117) Nitrogen regulatory protein P-II n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDL5_9FIRM E=0.0003 s/c=0.43 id=27% cov=83% -------MDMLTIILnNTEDLDAVLETLLKVGVRGATVIDSSGMGRTLCTKVPlfggirnlfedcrpnnvtIFSVIKDPgKLRNAINAVKKTmGDLERPG AGFMFVVPVTEAY------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 1000 1000 * * * * * * * * * * * * * * * * 1 0 * * * * * * 1700 0 0 L 2 * * * * * * * * * 1862 464 * * * * * * * * * 2 0 * * * * * * 2457 0 0 P 3 * * * 1440 * * * * * * * * 1266 * * 2214 * * * * 3 0 * * * * * * 2656 0 0 N 4 2737 * * * * * * * * * * 531 * * * 2663 * * * * 4 0 * * * * * * 2845 0 0 D 5 * * 451 3349 * * * * * * * 3713 3410 * * * * * * * 5 0 * * * * * * 3776 0 0 G 6 2467 * * * * 1988 * * 3748 * 3723 2618 * * * 3601 2544 * * * 6 0 * * * * * * 3982 0 0 G 7 3876 * 3055 2618 * 1691 * * 3986 * 3741 2934 * 3832 * * * * * * 7 75 4302 * 1000 1000 * * 4369 1000 0 I 8 * * * * 6435 * * 4918 * 4134 371 * * * * * * * * 2996 8 0 * * * * * * 6084 0 0 K 9 * * 4832 3920 6548 6055 * 6695 444 6538 * * * * 6444 * 6114 4834 * 4142 9 20 6175 * 1000 1000 * * 6184 1000 0 L 10 4831 6644 * 2556 * * * 5917 2195 1738 3391 6473 * 4290 5098 5869 6521 6700 7021 5813 10 40 5196 * 1319 739 * * 6371 1581 0 V 11 * * * * 6183 * * 856 * 2738 6768 * * * * * * 1865 * * 11 0 * * * * * * 6474 0 0 M 12 4896 * 6671 2780 4467 * * 2919 3813 4698 4721 6772 * * 4037 5032 2496 2686 4961 5606 12 0 * * * * * * 6474 0 0 A 13 716 4542 6350 * * 6731 * 3096 * 4995 * * * * * 6509 2872 5020 * * 13 0 * * * * * * 6474 0 0 I 14 6407 * * * 3538 * * 782 * 5615 6705 * * * * * 6604 2125 * 4292 14 0 * * * * * * 6474 0 0 I 15 6089 * * * 6334 * * 1251 * 3897 * * * * * 6752 5197 1154 * * 15 16 6487 * 0 * * * 6474 1000 0 R 16 6776 * 4650 4382 * 4944 4843 6723 2787 * * 3371 4103 3602 1208 6471 * * * * 16 0 * * * * * * 6474 0 0 P 17 4493 * 5438 3660 6986 * 5029 5700 3375 5741 5716 * 1532 4204 2997 3990 5128 5007 * 6187 17 0 * * * * * * 6474 0 0 D 18 5218 * 3890 2236 4230 2051 4675 * 4877 5209 6338 3958 * 4674 5716 3528 6883 4616 7089 5609 18 0 * * * * * * 6474 0 0 K 19 4267 5711 4347 6028 5606 * * * 1641 3671 4282 4270 * 5220 2340 6350 6183 5402 5790 4337 19 0 * * * * * * 6474 0 0 L 20 2216 * 6350 4807 3839 4581 * 4013 * 1855 5700 * * 4729 6671 3699 4353 3559 * 6752 20 0 * * * * * * 6474 0 0 A 21 4150 * 1905 1830 * 4167 5785 * 4040 * 6077 3129 5529 4610 * 4058 6814 * * * 21 0 * * * * * * 6474 0 0 D 22 3057 * 3077 2636 * * 5061 5230 3185 * * 5047 4487 4444 3289 3985 3090 5050 * * 22 0 * * * * * * 6474 0 0 V 23 3920 * * * * * * 2789 * 3257 4953 * * * * * 3619 808 * * 23 0 * * * * * * 6474 0 0 K 24 * 5654 * 3652 * * 5834 2739 2419 4033 4021 6776 * 5535 2983 4340 5311 2382 * * 24 21 6095 * 0 * * * 6474 1000 0 T 25 3752 * 2042 2340 * 6287 4841 * 3169 7228 * 4818 * 2972 3522 4567 5717 6836 * * 25 0 * * * * * * 6474 0 0 A 26 635 * * 4138 * 5260 5942 4506 5825 5138 * 6762 * * 4731 4859 5015 5153 * 5242 26 18 6319 * 3459 138 * * 6474 1000 0 L 27 2766 * * * 5662 * * 3753 * 634 4666 * * * * 4752 5901 5548 * * 27 0 * * * * * * 6474 0 0 A 28 3884 6762 5843 4130 7197 5196 4119 3996 2981 3473 6999 5218 * 4671 2024 4632 4319 4449 * 5545 28 18 6318 * 2322 322 * * 6474 1000 0 E 29 3047 * 3075 2228 * 4204 6287 5942 2584 5666 * 6509 * 4017 4412 3636 3698 * * * 29 0 * * * * * * 6474 0 0 V 30 1936 5177 * 4150 5781 6540 6338 2729 5777 3177 4235 5526 * 6420 5326 5110 4244 3008 * 5938 30 126 3772 6604 0 * * * 6474 2791 0 G 31 * * 5000 5825 * 275 4756 * 6140 * * * 4907 * * 4639 * * * * 31 46 4980 * 0 * 0 * 6481 2208 1000 A 32 2142 4847 * * 3015 * 5239 2806 * 4112 * * * * * 4532 * 1739 * 4478 32 11 7010 * 0 * * * 6483 1000 0 P 33 3921 * 4517 3959 * 3255 4439 * 3778 6764 * 4681 2627 5334 3435 3218 2967 7305 * 4914 33 13 * 6846 * * * * 6483 0 0 S 34 3203 6788 6264 * 5376 622 * 5927 * * * 5260 * * 6849 3115 * 6099 6118 * 34 15 6580 * 0 * * 0 6459 1000 1000 L 35 2625 5805 * * 2751 3074 * 3010 * 2642 2419 * 6099 * * 6301 * 4524 6554 * 35 0 * * * * * 0 6459 0 1000 T 36 4415 * 5927 6301 6635 * * 5595 * * 6760 5803 * * * 2886 452 * * * 36 0 * * * * 0 * 6459 0 1000 V 37 4821 6734 * * 4473 * * 1819 4701 3056 5339 6640 * * 5445 * 4875 1471 * 6004 37 24 5944 * 3807 107 * * 6483 1000 0 T 38 5148 * 6841 * 3560 * 5760 3051 * 3095 4403 * * * 4593 2082 2840 3963 6004 3681 38 18 6352 * 0 * * * 6483 1000 0 N 39 6103 * 2831 2913 * * 3718 6574 3268 4944 * 2848 4166 3888 3231 4512 5071 * * 4404 39 17 6391 * 3907 100 * * 6483 1000 0 V 40 2100 6539 * * 6330 2699 * 3670 * 6637 * * * * * 6495 5725 1086 * * 40 40 5209 * 3459 138 * * 6483 1640 0 S 41 6247 * * 3632 5465 5944 5682 5752 2398 4088 4803 5182 * 3656 1927 3685 3971 6090 6640 6841 41 0 * * * * * * 6483 0 0 G 42 5837 * * 4573 * 227 6322 * * * * * * * 6424 4742 * * * 5347 42 72 4365 * 3251 160 * * 6483 3094 0 R 43 5165 4000 * 5174 3188 * 4686 4280 * 6309 5795 * * 5865 1997 3744 3020 4161 * 2946 43 46 5005 * 2986 195 * * 6483 1809 0 G 44 4570 * 6391 * * 217 * * * 6186 * * * * * 4005 6681 * * * 44 215 2851 * 3476 136 * * 6483 4380 0 S 45 3187 5717 6764 5170 * 4941 5057 4124 2867 3031 5232 4774 * 7541 2900 3242 3687 4142 * 6335 45 305 2394 * 3933 98 * * 6483 4353 0 D 46 5781 * 2630 2339 5836 4304 3683 * 3759 * * 3478 6186 2595 3995 * 5680 4950 * 5692 46 453 1959 6330 3725 113 * * 6483 5042 0 L 47 5505 * 4448 2496 2669 5716 * 5438 4233 1772 5341 * * 5851 5709 5180 4497 6833 * 3882 47 195 2986 * 3768 110 0 * 6464 4404 1000 H 48 4057 6495 * 6309 4789 6186 3644 3249 5215 2787 5588 5502 3819 5000 4290 4330 3539 3256 * 3781 48 157 3274 * 3223 163 * * 6483 3836 0 Q 49 3970 * 4567 1778 6760 6339 * * 4374 * * * 1743 4263 3792 3548 5380 * * * 49 70 4408 * 1741 513 * * 6483 3016 0 K 50 6322 * 6760 5247 * * 3215 * 735 5944 5185 6006 5717 5682 2868 * * 6827 * * 50 33 5469 * 3807 107 * * 6483 1627 0 V 51 4446 * 5234 2184 * * * 3258 6539 4525 * 6566 * * 3258 5568 3866 1671 * 5061 51 93 4009 * 2525 275 * * 6483 3159 0 K 52 7010 * * 4720 5114 * * 2866 2117 4011 3609 * 5197 4028 2546 6887 6846 3045 * 6004 52 44 5043 * 4116 86 * * 6483 2029 0 V 53 * * * * 4913 * * 1510 5950 1752 * * * * * * * 1724 * * 53 0 * * * * * * 6483 0 0 E 54 * 6681 3652 1361 3971 * * 4832 6090 2536 4166 5655 * 5148 * 4976 3743 5316 * * 54 13 6760 * 2807 222 * * 6483 1000 0 C 55 5193 4596 * * * * * 1536 * 2946 3120 5751 * * * 5174 3259 2388 * * 55 15 6637 * 0 * * * 6483 1000 0 V 56 4113 * * * 3529 5475 * 3046 * 2360 6515 * * * * * 6566 1148 5672 5337 56 0 * * * * * * 6483 0 0 V 57 2750 3111 * * 6574 * * 3054 * 4200 5272 * * * * 5201 3771 1238 * * 57 0 * * * * * * 6483 0 0 A 58 3990 * 3073 2719 * 6274 4656 5950 2951 * * 4408 2781 4818 5590 3072 3314 * * * 58 0 * * * * * * 6483 0 0 D 59 3876 * 1353 2608 * 6545 6274 * 3333 * * 5094 5107 5110 5766 3184 5528 5950 * * 59 0 * * * * * * 6483 0 0 T 60 3285 * 2691 1642 * 6104 * 4892 4778 5950 * 4482 5192 4569 4916 2907 5422 6841 * 6846 60 16 6495 * 0 * * * 6483 1000 0 P 61 4590 6103 2883 3620 4896 * 4431 4069 3262 3743 3563 4623 5052 3075 4236 4741 * 5119 * 6029 61 0 * * * * * * 6483 0 0 A 62 2025 * 5950 4729 * 6821 * 5653 3822 3074 7039 * * 6581 * 5498 3809 1431 * * 62 0 * * * * * * 6483 0 0 E 63 4002 * 2089 1509 * 5102 * 5950 4831 * 6309 4321 4522 3979 3953 5227 * 6655 * * 63 0 * * * * * * 6483 0 0 D 64 3115 6629 3117 2489 7002 5926 6090 * 2557 5676 * 4062 3980 4123 3994 5790 3763 5837 * * 64 0 * * * * * * 6483 0 0 V 65 3301 6778 * * * * * 1711 * 3019 * * * * * * 4270 1320 6905 * 65 0 * * * * * * 6483 0 0 A 66 4169 * * * 3726 * 6196 2120 6815 2893 3564 * * * 5816 5502 4341 1740 * 6867 66 0 * * * * * * 6483 0 0 D 67 3309 * 3010 2113 * 4743 6196 * 2774 4990 * 3316 * 4285 3812 4206 4715 * * * 67 0 * * * * * * 6483 0 0 A 68 1423 5124 * 4590 5196 * 5463 3192 7098 4273 5336 * * 7093 6549 3160 2929 4252 * * 68 23 5959 * 1585 585 * * 6471 1000 0 I 69 3750 * * * * * * 730 * 2762 * * * * * * * 2511 * * 69 0 * * * * * * 6471 0 0 A 70 3948 5333 5661 5279 * 6035 5303 3661 2873 3477 3792 5728 6829 6655 3169 3173 3526 3608 * 5766 70 0 * * * * * * 6471 0 0 D 71 4828 * 3061 2020 * 4850 5586 * 2707 4850 * 4841 * 4004 3579 3963 3182 * * * 71 0 * * * * * * 6471 0 0 A 72 1543 6734 6013 4261 * 4902 3952 5149 4284 * * 3947 * 5498 * 4617 2970 2767 * * 72 16 6485 * 0 * * * 6458 1000 0 A 73 1276 4624 * * 6140 2757 * 5693 * 2921 4600 4003 * * * 4025 5619 4392 * * 73 15 6614 * 1000 1000 * * 6444 1000 0 H 74 4638 5561 4007 4093 5617 3030 2936 * 2947 * * 4082 * 3744 2708 4497 6831 * 5663 4180 74 14 6691 * 1000 1000 * * 6444 1000 0 T 75 6909 * 6691 5688 4641 * 5806 3867 6796 2139 6140 * 5045 * * 4578 998 6238 * * 75 37 5851 6930 2102 383 * * 6444 1600 0 G 76 4503 * 3050 4016 * 923 * * 4628 * * 3857 * 6605 5604 4558 5289 6657 5928 6458 76 14 6713 * 0 * * 0 6435 1000 1000 E 77 3778 6689 7096 2659 * * 4580 5766 2777 4829 5622 3723 6157 3399 3602 3383 3801 4734 6911 6669 77 28 6817 6596 1585 585 * 0 6435 1000 1000 K 78 4384 * 5109 4145 5310 5581 5938 3244 3821 * 5168 4665 1902 5771 4628 4640 3719 3080 * * 78 36 5329 * 2627 255 * 0 6426 1526 1702 G 79 4844 6582 5382 4878 * 304 5854 6144 * * * 5200 * * 6075 6245 * * * * 79 0 * * * * 948 1054 6426 0 1702 D 80 4276 * 857 5526 * 4587 4249 6297 4233 * 6567 4038 * 4976 4193 4952 5369 * * * 80 0 * * * * 0 * 6435 0 1000 G 81 5677 * * * * 77 * * * * * * * * * 5794 6142 * * * 81 20 * 6218 * * * * 6435 0 0 K 82 5754 * * 6077 3829 * * 2177 1180 3675 * * * * 4787 * 6592 3612 5210 * 82 0 * * * * * 0 6400 0 1000 I 83 3716 5498 * * * 5430 * 919 * 3593 5464 * * * * 5718 6605 2219 * * 83 0 * * * * * 0 6400 0 1000 F 84 4068 * * * 688 6660 * 6665 * 3685 6515 * * * * 6298 6575 * 3503 3326 84 0 * * * * * 0 6400 0 1000 I 85 * * * 6065 * 6458 * 2378 * 5010 5197 * * * * 3605 4505 745 * * 85 0 * * * * * 0 6400 0 1000 L 86 * 5445 * * 5670 * * 3329 6784 2302 3922 5874 6458 4881 6652 2305 3046 3012 * 4051 86 0 * * * * * 0 6400 0 1000 P 87 6831 * 2177 3066 * * * * 6854 * * 4252 1036 6821 6618 5354 4850 * * 5400 87 0 * * * * 0 * 6400 0 1000 V 88 * * * * * * * 2351 * 2926 4490 * 5677 * * * 5652 765 * * 88 0 * * * * * * 6435 0 0 E 89 4424 6917 2878 1608 * 5522 6620 4706 4431 3958 * 3960 * 6654 6191 3674 3434 4596 * * 89 0 * * * * * * 6372 0 0 N 90 4446 * 2508 2608 * 4418 6897 * 3379 * 6426 3616 * 2726 3312 3551 4938 * * * 90 0 * * * * * * 6372 0 0 A 91 1345 6543 * * 3453 6917 * 3224 * 5599 6369 * * * * 3814 4122 2134 * * 91 17 6420 * 0 * * * 6335 1000 0 I 92 3502 * * * 5388 6140 4678 1934 * 3660 4345 * * * * * 4826 1884 * 2853 92 0 * * * * * * 6146 0 0 Q 93 * * 3674 5991 5362 2302 4413 * 4748 * * 4587 5837 4471 1307 * 3780 6219 * * 93 0 * * * * * * 6019 0 0 V 94 * * * * * * * 655 * 2891 4345 * * * * * * 2466 * * 94 42 5127 * 0 * * * 5983 1000 0 R 95 5020 5095 * 4579 * 4380 4291 * 6039 * * * * 3933 668 3491 * * * * 95 0 * * * * * * 5695 0 0 T 96 * * 4310 * * 4623 * * * * 5081 4645 * * * 2818 552 5984 * * 96 25 5842 * 1000 1000 * * 5557 1000 0 G 97 3627 * 5678 * * 825 * 5456 2877 4437 * 5957 4939 5082 4269 * * * * * 97 0 * * * * * * 5407 0 0 K 98 4136 * 5356 431 * * * 5788 4374 * * * * 4166 * 6100 4636 * * * 98 0 * * * * * * 5344 0 0 T 99 4997 4191 * 2587 * * 6111 * 4996 * * 3253 * 5804 2146 2599 2412 * * * 99 0 * * * * * * 5105 0 0 G 100 5060 * 2319 * * 435 5064 * * * * * * * * * * * * * 100 0 * * * * * * 4916 0 0 R 101 3157 * 2887 1820 5251 4163 5507 5365 * * * 3309 3706 4830 5653 4166 5271 5212 * * 101 0 * * * * * * 4566 0 0 D 102 1869 * 2279 1736 * 5188 * * 3645 * * * * * * 3565 5144 * * * 102 0 * * * * * * 4548 0 0 A 103 396 * * * * 5401 * * * * * * * * * 3251 4176 4151 * * 103 0 * * * * * * 4463 0 0 V 104 * * * * * * * 1819 * 1173 * * * * * * * 1873 * * 104 0 * * 0 * * * 4320 0 0 //