HHsearch 1.5 NAME c4ou6A_ FAM FILE c4ou6A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4ou6A_.a3m DATE Sat Aug 16 08:14:44 2014 LENG 76 match states, 76 columns in multiple alignment FILT 58 out of 62 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.8 EVD 0.4625 1.6793 SEQ >ss_dssp CCCSEEECCTTCCCCTTHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHTTTTSSCC >sa_dssp ECEDECDBDEEAEBCEDBDECAEECEAEBEEECCEECBDEBBEECDEDDDDCDBDDAADCAADDBDEEBEEEECCE >ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC >ss_conf 9888876886789999999999982899870009999899999981188856637889999999999998625886 >Consensus xpxxkfxMxxxWqPsxdxxxxxxxxgxxixxxfxxxxlxEFixYWxxrgxxxtqxqWxxKFxqxVkxxrxxxxxxp >c4ou6A_ VPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLP >UniRef50_B0KHD4(160-232:303) Putative uncharacterized protein n=1 Tax=Pseudomonas putida GB-1 RepID=B0KHD4_PSEPG E=5e-14 s/c=1.08 id=27% cov=93% ----RFAMTADWQPSQKTFQAVLLQMGITQQAVDQDQFLEFRSFWLASPdDHRTQAKWEHALASHLKRnlRQAQAGG-- >UniRef50_Q21NR3(289-354:384) Putative uncharacterized protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21NR3_SACD2 E=0.0002 s/c=0.71 id=25% cov=84% ------PIPENWQPSNDVYDVLRL--ANIDLAFAQSVLPEFILYWRDSKQV--HTSWNTRFLQHVKFhwaKRLANG--- >UniRef50_Q1YQT9(225-290:398) Putative uncharacterized protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YQT9_9GAMM E=0.001 s/c=0.68 id=19% cov=88% ------ALTNEWRPSRDALQILIGQGG-INSNFIEDSIPEFILYWRDRGDLSS--TWDSKFIQHIRRQWQFFSGM- >UniRef50_B4RS94(118-188:222) Flavodoxin n=2 Tax=Alteromonas macleodii RepID=B4RS94_ALTMD E=3e-17 s/c=1.26 id=30% cov=93% ------AMTATWAPNKALFEEMASLLGIIDKTYDDNEVGEFIAYWLGRPsSVFSEFQWTQKFANNIKRKRLASGYAP >UniRef50_Q1MZF8(118-186:365) Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MZF8_9GAMM E=0.0006 s/c=0.66 id=21% cov=80% ----KQAIHPDWRPDTETLKYIE-QTLGIPKRYAQSQLQDFVFHYQSQGTLAT--SWSTMFIRWVNK--------- >UniRef50_Q5FN51(196-266:298) Putative phage-related protein n=1 Tax=Gluconobacter oxydans RepID=Q5FN51_GLUOX E=0.0004 s/c=0.65 id=27% cov=82% ----------DWQPSPELADFARQNGVD---PVATAEI--FRDHWRGvSGDKGCKADWDATWRNWVRREQGFSGNRP >UniRef50_A5W5W0(159-224:258) Putative uncharacterized protein n=1 Tax=Pseudomonas putida F1 RepID=A5W5W0_PSEP1 E=0.0004 s/c=0.69 id=21% cov=80% -------MDLEWKPDDKLLKAYAKRMGIPVDLFTDEATAAFVCHYSASGRCETQASWVSLLVKWVKR--------- >UniRef50_B3PDS0(95-156:367) Putative uncharacterized protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PDS0_CELJU E=1e-08 s/c=0.98 id=29% cov=72% ---------PHWQPDTELLKRIA--EHNIPEYFIRQQLPEFITYWRERGEISH--AWGAKFLKDVLH--------- >UniRef50_A4BGB5(142-206:249) Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BGB5_9GAMM E=5e-11 s/c=1.06 id=28% cov=80% ----KTAMHSDWEPSEDFPRLLE--FHDIPLQFALSELGKFRQYYLATDRK--EISWDVRYLNWVQRA-------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * 738 * 2067 * * * * * * * 2628 * * 1 0 * * * * * * 2223 0 0 P 2 * * * * * * * * * * * * 0 * * * * * * * 2 0 * * * * * * 3171 0 0 M 3 * 4413 * 3434 * 2595 * 1550 * 3914 4260 * * * * 2993 3194 * * * 3 0 * * * * * * 3224 0 0 G 4 * * 2135 * * 1112 * * * * * * * 2772 3712 3524 * * * * 4 0 * * * * * * 3455 0 0 K 5 4061 * * * * * * * 604 * * * 3090 * 2600 * * * * * 5 0 * * * * * * 4159 0 0 F 6 * * * * 677 * * * 4112 * * 4309 * 2870 * * 3935 3963 * * 6 0 * * * * * * 4213 0 0 A 7 1345 * * * 5039 * * * * * * * 1851 5254 * 3403 3311 3698 * * 7 0 * * * * * * 4700 0 0 M 8 * * * * * * * 4006 * 3232 267 * * * * * * * * * 8 0 * * * * * * 4924 0 0 Y 9 * * 4493 5434 * 4330 1259 * * 5258 5892 5471 3672 5292 * 4746 2513 * 5269 4133 9 0 * * * * * * 4924 0 0 P 10 2575 * 2146 3275 * 4981 5185 * * 3017 * 4585 2706 * * 3347 5206 * * * 10 0 * * * * * * 5059 0 0 D 11 3655 * 2057 3689 * 3860 3951 * 4706 5130 * 2611 * 3258 * 3532 4811 6351 * * 11 0 * * * * * * 5107 0 0 W 12 * * * * 5174 * * * * * * * * * * * * * 41 * 12 0 * * * * * * 5116 0 0 Q 13 4866 * * 3931 * * 4417 * 4592 2704 * * * 1328 2541 5201 4389 * * 6225 13 0 * * * * * * 5116 0 0 P 14 * * * * * * * * * 5309 * * 37 * * * * * * * 14 0 * * * * * * 5116 0 0 D 15 6125 * 1971 6711 * 5425 * * * * * 3993 5693 5678 5931 787 * * * * 15 27 * 5736 * * * * 5116 0 0 A 16 2672 * 2933 2343 6059 * 6148 * 3929 5177 5908 4889 3774 2862 3810 * 4448 6117 * * 16 26 5821 * 0 * * 0 5110 1000 1000 D 17 4203 * 989 2709 * * 6148 * 3782 4730 * 4956 * 4790 4601 5259 5119 * * * 17 23 5972 * 0 * * 0 5110 1000 1000 F 18 2826 * * * 1774 4601 * * * 2286 5168 * * * * * 2820 3067 6177 5821 18 0 * * * * * 0 5110 0 1000 I 19 5022 * * 5972 3933 * * 4020 5821 1773 3734 * 4087 6390 3931 5301 4490 5553 4601 2539 19 50 * 4890 * * * 0 5110 0 1000 R 20 5781 * 2427 2220 * 5470 * * 3200 * 5479 * 4626 2466 2407 * 5852 * * * 20 41 5141 * 0 * * 0 5116 1532 2013 L 21 3125 * 5861 4680 4990 * * 2823 3887 2277 4730 * * 3667 3245 * 5623 3189 * 5027 21 26 * 5791 * * 0 * 5116 0 2013 A 22 1558 5603 * * * * * 4108 * 1451 3868 * * * * 5178 4884 4500 * 4580 22 68 * 4434 * * * 0 5110 0 1000 A 23 1484 * * 2565 * * 6108 5968 4523 3515 * * * 4142 2652 3567 6395 * * * 23 165 * 3207 * * 0 * 5066 0 1781 L 24 5554 * * * * 4388 5035 * 3483 1407 4064 * * 3314 4629 5608 2636 5212 * 5343 24 289 * 2463 * * 1030 971 4950 0 2257 W 25 3156 4374 * * * 5633 * * 5794 3589 5443 4292 5166 2717 3032 5837 * 3683 2019 * 25 0 * * * * 975 1025 5058 0 2898 G 26 * * 6017 5709 3978 1012 3911 * * 5654 3380 3377 5684 5884 5579 * 4934 4734 * * 26 41 * 5146 * * 0 * 5148 0 2374 V 27 2877 * * * * 2518 2472 2648 * 3479 5320 * * * * 4836 4844 2600 * * 27 210 * 2887 * * * 0 5116 0 1523 A 28 3039 * 3336 * * 2818 * 2611 * 5120 4792 1911 * 5827 * 5957 3965 5105 * 5934 28 109 * 3786 * * 370 2145 5026 0 3046 L 29 * * * * * * * 1008 4844 1559 * * 4481 * * * 4910 4305 * * 29 42 * 5125 * * 1396 690 4989 0 2311 R 30 4736 * 1793 5476 * * * * 4372 * * 3841 1907 4476 4388 3465 4641 4529 * * 30 51 5444 6396 0 * 1396 690 5022 1000 2155 E 31 5762 6094 3634 2232 * * * 6107 3871 3558 * * 3529 4206 2247 3574 4757 * * 4909 31 28 5686 * 2585 263 458 1879 5052 1000 2049 P 32 3554 * 3110 3446 * 4010 4748 * * 3768 * 4676 2567 2568 4537 4264 4384 * * 6052 32 119 3657 * 0 * 0 * 5118 1492 1000 V 33 * * * * 862 * * 5701 * 3727 * * 4253 * * * * 3576 * 2192 33 0 * * * * * * 5116 0 0 T 34 1533 5655 3034 * * * * 3366 5564 3608 * 5919 * 5425 4259 5132 2712 4672 * * 34 0 * * * * * * 5116 0 0 T 35 4053 * 2394 2456 * * 6395 * 5564 2810 6012 * 3315 2691 4228 * 4184 6323 * * 35 0 * * * * * * 5116 0 0 E 36 3668 * 2598 2268 * 4456 4271 * * * * 4866 * 2528 * 2550 3780 * * * 36 0 * * * * * * 5116 0 0 E 37 2942 4685 2976 1562 * * * 5666 * 3368 6474 * * 2361 6012 6134 * 6256 * * 37 0 * * * * * * 5116 0 0 L 38 * * * * 5055 * * 2265 * 1008 * * * * 4092 * 4592 2604 * * 38 45 * 5031 * * * * 5116 0 0 A 39 1867 * 5648 4007 * 2428 * 5528 6101 3555 * * 1892 4942 * 5661 * 6070 * * 39 0 * * * * * 0 5047 0 1000 S 40 3215 * 3014 576 * * * * 5049 * * 5887 * 5765 * 4969 * * * * 40 0 * * * * 0 * 5047 0 1000 F 41 * * * * 0 * * * * * * * * * * * * * * * 41 0 * * * * * * 5116 0 0 I 42 5215 * * * * * * 1450 * 5671 * * * * 2098 * 4550 1684 * * 42 0 * * * * * * 5130 0 0 A 43 2672 4632 3647 * 3973 * * 4449 * 2160 * * * 5175 * 3297 2516 3547 * * 43 0 * * * * * * 5130 0 0 Y 44 * * * * 2848 * 3303 * * * * * * * * * * * * 396 44 0 * * * * * * 5130 0 0 W 45 * * * * * * * * * * * * * * * * * * 149 3349 45 0 * * * * * * 5130 0 0 Q 46 6260 6050 * * * 5358 * 4308 3819 2447 2970 6105 * 2741 1754 4632 6144 * * * 46 0 * * * * * * 5130 0 0 A 47 1839 * 2541 1975 * 2545 * * * * * 4308 * * * 3787 * * * * 47 45 5019 * 0 * * * 5130 1000 0 E 48 * * * 2173 * * * * 4691 * * 5748 * 5050 1185 2394 4596 5692 * * 48 0 * * * * * * 5130 0 0 G 49 * * 4442 * * 761 * * 6288 * * 3678 2164 4908 5929 * * * * * 49 163 3875 4701 0 * * * 5130 1691 0 K 50 5767 5620 2653 2113 * * * * 2405 * * 5395 * 2543 3499 3906 4977 * * * 50 95 4804 5174 0 * * 0 5042 1120 1520 V 51 1997 4612 * * 5613 * 4900 4856 2898 3008 * * * * 4004 * 4929 1908 * * 51 468 4929 2032 0 * 1009 991 5090 1081 2114 F 52 3789 * * 4380 1490 3026 * * 3996 5699 4029 * 5308 * 4655 3575 * 5061 * 3664 52 177 3111 * 0 * 2733 235 4896 1902 2989 H 53 * 4670 * 5093 * * 2244 * 4588 * * * 4145 5248 4715 2750 1289 * * * 53 342 * 2245 * * 0 * 4914 0 2963 H 54 * * * 3088 * * 1605 * 4745 * * 5289 4691 1295 5468 5500 * * * * 54 37 * 5289 * * * 0 4911 0 2666 V 55 2418 * 5295 5186 3090 4114 3399 2880 5188 5337 * * * * 4130 4107 3041 3938 * * 55 36 * 5337 * * 198 2961 4870 0 2743 Q 56 4006 * 4938 * * * * * 4932 * * 4658 * 1216 * 1719 3344 * * * 56 0 * * * * 973 1028 5036 0 1377 W 57 * * * * * * * * * * * * * * * * * * 0 * 57 0 * * * * 0 * 5060 0 1000 Q 58 * * 3147 1746 * 4412 * * * * 4617 2196 5620 3791 * 4363 3293 4648 * * 58 0 * * * * * * 5077 0 0 Q 59 3351 * * * * * 3586 * * 4557 5457 4528 * 1643 * 2048 3054 5176 * * 59 0 * * * * * * 5077 0 0 K 60 3568 * * 4290 * * * * 555 4648 5061 * * * 3599 * 4990 * * * 60 0 * * * * * * 5077 0 0 L 61 * * * * 530 * * * * 2011 * * * * * * * * 4990 5176 61 0 * * * * * * 5077 0 0 A 62 1585 * * * * * * 2453 5075 2367 * * * * 3857 * 5133 2615 * * 62 0 * * * * * * 5013 0 0 R 63 4046 * * * 4858 * * * 2662 * * 3280 * 1395 2119 4897 * * * * 63 0 * * * * * * 5013 0 0 S 64 5711 * 5847 5625 5690 5302 1172 * * 5437 5303 2958 * * 5033 3504 * * 2655 * 64 0 * * * * * * 5013 0 0 L 65 4084 * * * * * * 2873 * 2111 * * * * * * * 803 * * 65 0 * * * * * * 4983 0 0 Q 66 * * * * * * * 4191 1214 5511 5124 3649 * 2538 2388 * * 5601 * * 66 19 6265 * 1000 1000 * * 4831 1000 0 I 67 * * * * 3203 * 2649 3752 4006 5570 * 5079 * 4563 1283 4330 5337 * * 5850 67 134 3492 * 1239 795 * * 4834 1597 0 G 68 3586 5092 * 3489 * 4553 4047 4806 2667 * * * * 4425 2364 2626 * 3333 * * 68 0 * * * * * * 4239 0 0 R 69 * * * * * * * * 3902 * * * * 2899 702 * * * 2441 * 69 0 * * * * * * 4139 0 0 A 70 1575 * * 4438 * 3755 * * 4177 2417 * * * 3004 * 2498 * * * * 70 0 * * * * * * 3958 0 0 S 71 2838 * * * 2452 * * 4432 1548 * * * * 2900 3416 4027 * * * * 71 0 * * * * * * 3959 0 0 N 72 2639 * * * 3732 * * * * * * 2107 * 3206 * 1452 4102 * * * 72 0 * * * * * * 3860 0 0 G 73 2939 * * * * 728 3090 * 3981 * * * * * * 3557 * * * * 73 0 * * * * * * 3729 0 0 G 74 3660 * * * * 783 * * * * * 3228 3653 * * * * * * 2702 74 0 * * * * * * 3617 0 0 L 75 2227 * * * * * * * * 1994 2002 * * 2960 2669 * * * * * 75 0 * * * * * * 3131 0 0 P 76 * * * * * * * * * * * * 0 * * * * * * * 76 0 * * 0 * * * 2432 0 0 //