HHsearch 1.5 NAME c4om3D_ FAM FILE c4om3D_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4om3D_.a3m DATE Sat Apr 12 08:18:23 2014 LENG 122 match states, 122 columns in multiple alignment FILT 15 out of 19 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.1 EVD 0.3607 -3.6259 SEQ >ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHTCCCHHHH HHHHHHHHHHSCCCCCCCSSCC >sa_dssp EEEDECEDDEEEEEDEEEDDEEDEDDEDEEEDEEEDEEDEDEDDDEECDEDEDDDEEDDEDDDCEEDDDDEEECEECEEEDCCDCDEDCEEEDEDDDEDD EDDDCEEDDDEEDEEDDEEEEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH HHHHHHHHHHHHHHHCCCCCCC >ss_conf 9656889989999999999998989989999854998789899987622110399999999999999999998653215899999999999721699999 9997188877763102489998 >Consensus ftxxExxDrIKeEfxxlQaqxhSlkxExeKlaxEKtemqRhYvmYyEmSygLniEMhKQxEiaKRLxxixxqxxPxLsqehQxqvxxAvEraKqvtxxEL nxiigxqqxqxqxlxxhxpxxp >c4om3D_ FTIPESLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTICAQVIPFLSQEHQQQVAQAVERAKQVTMAEL NAIIGQQQLQAQHLHGHGPPVP >UniRef50_B3RR30(18-138:667) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RR30_TRIAD E=2e-44 s/c=1.48 id=73% cov=100% FTTPESCDRIKEEYQILQAQNQSLKLECEKLANEKTDLHRHYIMYYEMSYGLNIEMHKQSEVAKRLSGICAQIIPYLSQEHQQQVANAIERAKQVTVTDL NSIMGQQQVHLQQHHPHGPQI- >UniRef50_C4QBA6(18-125:1212) Transducin-like enhancer protein 1 n=1 Tax=Schistosoma mansoni RepID=C4QBA6_SCHMA E=2e-35 s/c=1.39 id=67% cov=85% FSVPEACDKIKDELLGLQTQYHSLKCEFEKAVQEKSELQRHYLLYYEITYGLNVEMHKQMEIAKRLNAILVQVIPFLSQE----VAAAVDRAKQVTLSEL SSIIGPQ--------------- >UniRef50_Q1JQ32(20-139:341) Zgc:136336 n=3 Tax=Danio rerio RepID=Q1JQ32_DANRE E=3e-51 s/c=1.68 id=78% cov=99% FTVLETLDHIKEEFQLFQAQYHSLKLECEKLASEKTEMHRHYIMYYEMSYGLNIEMQKQAEIVKRLSVICTQIIPLLSQEHQHQVAQAVERSKHVSMAEL NAIIGQQQF--QHLSHHAPGFP >UniRef50_C1LZY6(18-124:930) Groucho-related n=1 Tax=Schistosoma mansoni RepID=C1LZY6_SCHMA E=3e-47 s/c=1.77 id=65% cov=89% FTVLETCDRIKEEFTCIQQQNHSLQLEREKLLSERSDMQRICVMYYEMANGLNLEMHRQMEIAKRLSAILTQVLPFLSQEHQSQVLSAIERAKQVTMQEL NSVLAAQ--------------- >UniRef50_Q4VKB1(18-132:618) GROUCHO n=1 Tax=Pristionchus pacificus RepID=Q4VKB1_PRIPA E=5e-41 s/c=1.46 id=41% cov=95% ---LDALEKLKDDYNHMQAQLSSQRAELDKMNAEKEQLQRHYMMYYEMSCGLNMEMQKQSEVAKRMTALLQSMLQYAPHDAQASTIQAMERAKQISLQEL QQLTAASQAQ-QMLGMTGP--- >UniRef50_B0WU77(43-89:125) Putative uncharacterized protein n=1 Tax=Culex quinquefasciatus RepID=B0WU77_CULQU E=5e-14 s/c=1.68 id=79% cov=39% -----------------------------------------------------------TEIAKRLNALIGQLLPFLATEHQQQVAQAVERAKQVTMPEL NAIIG----------------- >UniRef50_Q4H3F0(18-133:847) Groucho n=3 Tax=Chordata RepID=Q4H3F0_CIOIN E=2e-49 s/c=1.69 id=76% cov=96% -SISEFCDRIKEDFSYLQAHNHSLKMECEKLATEKTETQRQYVMYYEMSYGLNVEMHKQSEIAKRLGIICAQIIPLLSQEHQQQVASAVERAKQVTMPEL NQIIG-QQLQVQSLMAHS---- >UniRef50_Q14CJ1(87-201:264) Amino-terminal enhancer of split n=6 Tax=Tetrapoda RepID=Q14CJ1_HUMAN E=1e-44 s/c=1.57 id=78% cov=95% FTTSDSCDRIKDEFQLLQAQYHSLKLECDKLASEKSEMQRHYVMYYEMSYGLNIEMHKQAEIVKRLNGICAQVLPYLSQEHQQQVLGAIERAKQVTAPEL NSII-RQQLQAHQLSQ------ >UniRef50_O02482(4-102:612) Transcription factor unc-37 n=2 Tax=Caenorhabditis RepID=UNC37_CAEEL E=7e-29 s/c=1.29 id=35% cov=81% -SYLETLDRIKDEHAEMSKHVNQQRSDIEKVALEKENMNRSYMTYAEVSNTLRSDLRKAEEINKRLQEfIMQSLAPQLSQDNQANCLAALEAFKTASPRE ----------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * F 1 * * * * 139 * * * * 3440 * * * * * * * * * * 1 0 * * * * * * 1627 0 0 T 2 * * * * * * * * * * * * * * * 1217 811 * * * 2 0 * * * * * * 2005 0 0 I 3 * * * * * * * 3013 * * * * * * * * 2840 1068 * 1946 3 0 * * * * * * 2005 0 0 P 4 4318 * * * * * * * * 952 * 3709 2063 * * 3094 * * * * 4 0 * * * * * * 2215 0 0 E 5 * * 2319 323 * * * * * * * * * * * * * * * * 5 0 * * * * * * 2215 0 0 S 6 2148 * * * 4001 * * 4199 * * * * * * * 1800 1434 * * * 6 0 * * * * * * 2215 0 0 L 7 * 920 * * * * * * * 1085 * * * * * * * * * * 7 0 * * * * * * 2215 0 0 D 8 * * 227 2778 * * * * * * * * * * * * * * * * 8 0 * * * * * * 2215 0 0 R 9 * * * * * * 4010 * 2148 * * * * * 489 * * * * * 9 0 * * * * * * 2215 0 0 I 10 * * * * * * * 227 * 2778 * * * * * * * * * * 10 0 * * * * * * 2215 0 0 K 11 * * * * * * * * 0 * * * * * * * * * * * 11 0 * * * * * * 2215 0 0 E 12 * * 1008 992 * * * * * * * * * * * * * * * * 12 0 * * * * * * 2215 0 0 E 13 * * 2264 337 * * * * * * * * * * * * * * * * 13 0 * * * * * * 2215 0 0 F 14 * * * * 875 * 2585 * * 3647 * * * * * * * * * 2263 14 0 * * * * * * 2215 0 0 Q 15 2585 * * * * * 3709 * * 3647 * 2778 * 1393 * 4001 3507 * * * 15 0 * * * * * * 2215 0 0 F 16 * 3507 * 2585 1847 3647 2778 3998 * 3098 * * * * * * * * * 4001 16 0 * * * * * * 2215 0 0 L 17 * * * * 4010 * * 3507 * 896 1678 * * * * * * * * * 17 0 * * * * * * 2215 0 0 Q 18 * * * * * * * * * * * * * 263 * 2585 * * * * 18 0 * * * * * * 2215 0 0 A 19 708 * * * * * * * 2585 * * * * 3507 * * 2907 * * * 19 0 * * * * * * 2215 0 0 Q 20 * * * * * * 2126 * * * * * * 375 * * * * * * 20 0 * * * * * * 2215 0 0 Y 21 * * * * * * * * * 2778 * 2231 * * * * * 2585 * 1075 21 0 * * * * * * 2215 0 0 H 22 * * * * * * 678 * * * * 2585 * 3998 * 2778 * * * * 22 0 * * * * * * 2215 0 0 S 23 * * * * * * * * * * * * * 2585 * 263 * * * * 23 0 * * * * * * 2215 0 0 L 24 * * * * * * * * * 540 * * * 1680 * * * * * * 24 0 * * * * * * 2203 0 0 K 25 * * * * * * * * 733 * * * * 3533 1680 * * * * * 25 0 * * * * * * 2203 0 0 L 26 2772 3700 * * * * * * * 984 4097 * * * * 2594 * 4413 * * 26 0 * * * * * * 2203 0 0 E 27 * * 2594 261 * * * * * * * * * * * * * * * * 27 0 * * * * * * 2203 0 0 C 28 * 1066 * * 3700 * * 2594 * 2772 * * * * 3533 * * * * 4413 28 0 * * * * * * 2203 0 0 E 29 * * 2030 405 * * * * * * * * * * * * * * * * 29 0 * * * * * * 2203 0 0 K 30 * * * * * * * * 0 * * * * * * * * * * * 30 0 * * * * * * 2203 0 0 L 31 3700 * * * * * * * * 711 2772 * * * * * * 2594 * * 31 0 * * * * * * 2203 0 0 A 32 535 * * * * * * * * 3533 * 2772 * * * * * 3700 * * 32 0 * * * * * * 2203 0 0 S 33 2772 * * * * * * * * 2594 * 3240 * 3700 * 1334 3204 * * * 33 0 * * * * * * 2203 0 0 E 34 * * * 0 * * * * * * * * * * * * * * * * 34 0 * * * * * * 2203 0 0 K 35 * * * * * * * * 130 * * * * * 3533 * * * * * 35 0 * * * * * * 2203 0 0 T 36 * * * 1680 * * * * * * * * * * * 2218 1080 * * * 36 0 * * * * * * 2203 0 0 E 37 * * 2783 882 * * * * * * * 2594 * 2772 * * * * * * 37 0 * * * * * * 2203 0 0 M 38 * * * * * * * 4319 * 1825 715 * * * * * 4097 * * * 38 0 * * * * * * 2203 0 0 Q 39 * * * * * * 3074 * * * * 2594 * 483 * * * * * * 39 0 * * * * * * 2203 0 0 R 40 * * * * * * * * * * * * * * 0 * * * * * 40 0 * * * * * * 2203 0 0 H 41 * * * * * * 536 3533 * * * * * 4097 * 2594 * * * * 41 0 * * * * * * 2203 0 0 Y 42 * 3533 * * * * * * * * * * * * * * * * * 130 42 0 * * * * * * 2203 0 0 V 43 * * * * * * * 3074 * 3700 1680 * * * * * * 1023 * * 43 0 * * * * * * 2203 0 0 M 44 * * * * * * * * * 3700 401 * * * * * 2594 * * * 44 0 * * * * * * 2203 0 0 Y 45 * * * * * * * * * * * * * * * * * * * 0 45 0 * * * * * * 2203 0 0 Y 46 2594 * * * * * * * * * * * * * * * * * * 261 46 0 * * * * * * 2203 0 0 E 47 * * * 0 * * * * * * * * * * * * * * * * 47 0 * * * * * * 2203 0 0 M 48 * * * * * * * 3700 * * 401 * * * * * * 2594 * * 48 0 * * * * * * 2203 0 0 S 49 3533 * * * * * * * * * * * * * * 257 3700 * * * 49 0 * * * * * * 2203 0 0 Y 50 * 2772 * * * * * * * * * 1988 * * * * * * * 733 50 0 * * * * * * 2203 0 0 G 51 * * * * * 261 * * * * * * * * * * 2594 * * * 51 0 * * * * * * 2203 0 0 L 52 * * * * * * * * * 0 * * * * * * * * * * 52 0 * * * * * * 2203 0 0 N 53 * * * * * * * * * * * 261 * * 2594 * * * * * 53 0 * * * * * * 2203 0 0 I 54 * * * * * * * 1209 * 3533 2772 * * * * 2594 * 2564 * * 54 0 * * * * * * 2203 0 0 E 55 * * 2594 261 * * * * * * * * * * * * * * * * 55 0 * * * * * * 2203 0 0 M 56 * * * * * * * * * 2594 261 * * * * * * * * * 56 0 * * * * * * 2203 0 0 H 57 * * * * * * 671 * * * * * * 2277 2594 * * * * * 57 0 * * * * * * 2203 0 0 K 58 * * * * * * * * 130 * * * * * 3533 * * * * * 58 0 * * * * * * 2203 0 0 Q 59 2594 * * * * * * * * * * * * 261 * * * * * * 59 0 * * * * * * 2203 0 0 T 60 2709 * * 2560 * * * * * * 2078 * * * * 2050 2328 * * * 60 115 3707 * 4248 78 * * 2160 1000 0 E 61 * * * 115 * * * * * * * * * 3707 * * * * * * 61 0 * * * * * * 2160 0 0 I 62 3707 * * * * * * 527 * * * * * * * * * 2123 * * 62 0 * * * * * * 2160 0 0 A 63 562 * * * * * * * * * * 2560 * * * * * 2709 * * 63 0 * * * * * * 2160 0 0 K 64 * * * 3707 * * * * 115 * * * * * * * * * * * 64 0 * * * * * * 2160 0 0 R 65 * * * * * * * * * * * * * * 0 * * * * * 65 115 3707 * 0 * * * 2160 1000 0 L 66 * * * * * * * * * 207 2902 * * * * * * * * * 66 0 * * * * * * 2160 0 0 N 67 * * * * * 4293 * * * * * 1651 * 2560 3707 1996 2902 * * * 67 0 * * * * * * 2160 0 0 T 68 1276 * * 2560 * 3281 * 4293 * * * * 3707 * * * 3617 3245 * * 68 268 2560 * 0 * * * 2160 1000 0 I 69 * * * * * * * 395 * 2618 * * * * * 3707 * * * * 69 0 * * * * * * 2160 0 0 C 70 * 1527 * * * 3707 * 3872 * 1562 2560 * * * * * * * * * 70 0 * * * * * * 2160 0 0 A 71 1417 * * * * 5100 * * * * * * 3707 1721 * * 2801 3776 * * 71 0 * * * * * * 2160 0 0 Q 72 * * * * * * * * * 3707 * * * 689 * 1721 * * * * 72 0 * * * * * * 2160 0 0 V 73 * * * * * * * 2014 * 2011 2440 * * * * 3707 * 2038 * * 73 0 * * * * * * 2160 0 0 I 74 2560 * * * * * * 1868 * 1576 4489 * * * * * 4341 2975 * * 74 0 * * * * * * 2160 0 0 P 75 * * * * * * * * * * * * 207 2902 * * * * * * 75 115 3707 * 3585 126 * * 2160 1000 0 F 76 * * * * 1471 3707 * * * 3222 * * * 2560 * 4341 * * * 2079 76 0 * * * * * * 2160 0 0 L 77 2902 * * * * * * * * 207 * * * * * * * * * * 77 0 * * * * * * 2160 0 0 S 78 5100 * * * * * * * * * * * 2902 * 3707 494 4305 * * * 78 0 * * * * * * 2160 0 0 Q 79 * * * 3707 * * 2902 * * * * * * 395 * * 5100 * * * 79 0 * * * * * * 2160 0 0 E 80 * * 1721 521 * * * * * * * * * * * * * * * * 80 320 2990 3776 4968 47 * * 2160 1198 0 H 81 2799 * * * * * 561 * * * * 2485 * * * * * * * * 81 0 * * * * * 0 2118 0 1000 Q 82 * * * * * * * * * * * * * 0 * * * * * * 82 0 * * * * * 0 2118 0 1000 Q 83 1634 * * * * * 4058 * * * * * * 937 * 3389 * * * * 83 0 * * * * * 0 2118 0 1000 Q 84 * * * * * * * * * * * 2485 * 561 * 2799 * * * * 84 0 * * * * 0 * 2118 0 1000 V 85 * 2560 * * * * * * * * * * * * * * 2902 521 * * 85 0 * * * * * * 2160 0 0 A 86 1371 * * * * * * 2902 * 1500 * * * * * * * 2990 * * 86 0 * * * * * * 2160 0 0 Q 87 1828 * * * * 4437 * * * * * 4140 * 1068 * 2854 * * * * 87 0 * * * * * * 2160 0 0 A 88 0 * * * * * * * * * * * * * * * * * * * 88 0 * * * * * * 2160 0 0 V 89 * * * * * * * 2394 * 2560 2449 * * * * * * 1129 * * 89 0 * * * * * * 2160 0 0 E 90 * * 3016 190 * * * * * * * * * * * * * * * * 90 0 * * * * * * 2160 0 0 R 91 2560 * * * * * * * * * * * * * 268 * * * * * 91 0 * * * * * * 2160 0 0 A 92 369 * * * 2560 * * * * * * * * * * 4155 * * * * 92 0 * * * * * * 2160 0 0 K 93 * * * * * * * * 0 * * * * * * * * * * * 93 0 * * * * * * 2160 0 0 Q 94 * * * * * * 4155 * * * * * * 369 * * 2560 * * * 94 0 * * * * * * 2160 0 0 V 95 2560 * * * * * * 2902 * * * * * * * * * 521 * * 95 0 * * * * * * 2160 0 0 T 96 * * * * * * * * * * * * * * * 1476 643 * * * 96 0 * * * * * * 2160 0 0 M 97 4437 * * * * * * * * 2274 1089 * 2560 * * * * 3220 * * 97 0 * * * * * * 2160 0 0 A 98 2559 * * * * 3323 * * * * * * 2984 2177 2560 3776 2832 * * * 98 0 * * * * * * 2160 0 0 E 99 * * 4140 84 * * * * * * * * * * * * * * * * 99 0 * * * * * * 2160 0 0 L 100 * * * * * * * * * 0 * * * * * * * * * * 100 0 * * * * * * 1879 0 0 N 101 * * * * * * * * * * * 442 * 2513 * 3494 * * * * 101 0 * * * * * * 1879 0 0 A 102 1351 * * * * * * * * * * 4072 * 2086 * 1676 * * * * 102 0 * * * * * * 1879 0 0 I 103 * * * * * * * 719 * 2092 * * * * * 4102 * 3325 * * 103 0 * * * * * * 1879 0 0 I 104 * * * * * * * 739 * 2650 3916 * * * * * 2513 * * * 104 86 * 4105 * * * * 1879 0 0 G 105 1809 * * * * 485 * * * * * * * * * * * * * * 105 292 * 2448 * * 0 * 1881 0 1000 Q 106 1685 * * * * * * * * * * * 3172 1001 3676 * * * * * 106 0 * * * * 0 * 1898 0 1266 Q 107 * * * * * * * * * * * * * 290 * 2459 * * * * 107 0 * * * * * * 1923 0 0 Q 108 * * * * * * 3903 * * * * 3660 * 228 * * * * * * 108 119 * 3660 * * * * 1861 0 0 L 109 2200 * * * 3403 * * * * 967 * * * * * * 3755 3291 * * 109 143 * 3403 * * 0 * 1852 0 1000 Q 110 * * * * * 3787 3268 * * * * * * 280 * * * * * * 110 363 * 2167 * * * 0 1848 0 1000 A 111 907 * * * * * * * * 1503 * * * * * * * 3135 * * 111 0 * * * * 0 * 1499 0 1525 Q 112 3903 * * * * * 3682 * * * * * * 226 * * * * * * 112 0 * * * * * * 1861 0 0 H 113 * * * * * * 1149 * * * 2262 * 3660 2547 * 3467 * * * * 113 0 * * * * * * 1861 0 0 L 114 * * * * * * 3425 * * 141 * * * * * * * * * * 114 274 3416 3660 0 * * * 1861 1000 0 H 115 * * * * * 2200 1883 * * * 2542 * * * * 1559 * * * * 115 0 * * * * 0 * 1852 0 1000 G 116 3467 * * * * 2700 2683 * * * 2262 * 3425 2713 3903 3660 * * * * 116 113 3733 * 1000 1000 * * 1861 1000 0 H 117 * * * * * * 496 * * * * 3775 * * * * 2198 * * * 117 0 * * * * * * 1854 0 0 G 118 1454 * * * * 1105 * * * * * * * * * 2556 * * * * 118 0 * * * * * * 1854 0 0 P 119 * * * * * * * 3139 * * * * 331 3447 * * * * * * 119 0 * * * * * * 1799 0 0 P 120 * * * * * 1800 * * * * * * 884 2549 * * * * * * 120 0 * * * * * * 1476 0 0 V 121 * * * * 2747 * * 1630 * 2855 * * * * * * * 1360 * * 121 0 * * * * * * 1476 0 0 P 122 * * * * * * * * * * * * 0 * * * * * * * 122 0 * * 0 * * * 1370 0 0 //