HHsearch 1.5 NAME c4o9pC_ FAM FILE c4o9pC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4o9pC_.a3m DATE Sat Jun 14 08:13:33 2014 LENG 89 match states, 89 columns in multiple alignment FILT 56 out of 60 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.1 EVD 0.4586 0.4947 SEQ >ss_dssp CCCCHHHHHHHHHHHHHHHHHHHSSCCGGGHHHHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC >sa_dssp EEEDEEDDDEDEDEEDEEDEEEDDECEEECDDBDEBCDDCEDAEEBEECEEEDEECEDEEDEEEBEDCCEEBDECCEDAEDDBDEDDEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >ss_conf 91268999999999999999998368766504046777677799999888875177640899999999999999853236874420259 >Consensus xxxxflxxlxvFvLAxxvGyxvVxxVxpaLHTPLMSxTNAISGiiivGalxxxgxxxxxxxxxlgxxAxxlaxvNixGGFxVTxRMLxx >c4o9pC_ XEFGFWSALYIFVLTAFLGYELITRVPVILHTPLXSGSNFIHGVVVVGAXVVLGHAETGLEKLIGFLGVILGAANAAGGYAVTVRXLEX >UniRef50_B2RJU5(7-93:104) Probable NADPH-NAD transhydrogenase alpha subunit n=2 Tax=Bacteria RepID=B2RJU5_PORG3 E=5e-07 s/c=0.64 id=40% cov=90% --------IIVLIASTLIGYKLISNVPSLLHTPLMSGMNALSGVTVIGAIAAAGlsfkfghDGKLILGQIFGGLAIILATINVVGGFGVTHRML-- >UniRef50_P51995(44-128:132) NAD(P) transhydrogenase subunit alpha part 2 n=13 Tax=Rickettsia RepID=PNTAB_RICPR E=1e-17 s/c=1.07 id=37% cov=92% -------AITIFVLASFVGYYVVWKVTPALHTPLMSITNAISGIIVISSMIAItSSSAFEFSSLLGSFATLLASINIFGGFIVTTRMLE- >UniRef50_B5Y5A5(445-527:533) Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B5Y5A5_PHATR E=2e-20 s/c=1.19 id=36% cov=94% ----FTQQLGYFILAGFLGYYLIWNVEPALFSPLMSTSNALSGVVILGGILMVSTETGSPTSVLGCVATGVAAINVFGGFAVSYRML-- >UniRef50_Q1IIW4(4-90:103) Nicotinamide nucleotide transhydrogenase, subunit alpha n=9 Tax=Bacteria RepID=Q1IIW4_ACIBL E=3e-13 s/c=0.87 id=36% cov=98% -KLNLIDGLFIFMLACFIGFEVIRRVSPLLHTPLMSLTNALDAIAVVGAITLVGaHPHSRLTTIAGTIAIAAATSNVVGGFFITDRML-- >UniRef50_UPI00019093DE(118-201:245) NAD(P) transhydrogenase subunit alpha n=1 Tax=Rhizobium etli CIAT 894 RepID=UPI00019093DE E=9e-22 s/c=1.24 id=36% cov=96% --LSFMSHFVVFVLSCFIGFQVIWNVSHSLHTPLMAVTNAVSGIVILGALLQIGSG-NGLVVALAALSVLIATINIVGGFLVTRRML-- >UniRef50_Q13423(496-583:1086) NAD(P) transhydrogenase, mitochondrial n=76 Tax=cellular organisms RepID=NNTM_HUMAN E=2e-20 s/c=1.14 id=30% cov=98% --LAFSQMVTTFGLAGIVGYHTVWGVTPALHSPLMSVTNAISGLTAVGGLALMGGHLypSTTSQGLAALAAFISSVNIAGGFLVTQRMLD- >UniRef50_C6WP75(5-90:124) NAD/NADP transhydrogenase alpha subunit-like protein n=13 Tax=Actinomycetales RepID=C6WP75_ACTMD E=5e-15 s/c=0.95 id=43% cov=94% ----LLANAAILVLAGFVGFAVISKVPNTLHTPLMSGTNAIHGIVVLGALIVLGElpaDAGWGPRAIAFVALVFGTLNVVGGFLVTDRML-- >UniRef50_C0QIR5(2-86:100) PntA2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIR5_DESAH E=5e-14 s/c=0.93 id=38% cov=97% --INLLLMLGVFLFSFVVGYFLISRVPTLLHTPLMSMTNAISAVTILGALILFSVKSTGTEQVIGGVAFVMAAFNLVGGFAITDRML-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * X 1 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 1 * * * * * * * 0 0 0 E 2 * * * 1051 * * * * 951 * * * * * * * * * * * 2 0 * * * * * * 1520 0 0 F 3 * * * * 2328 * * 2341 * 729 * * * * * * * * * * 3 0 * * * * * * 2329 0 0 G 4 1477 * * * * 2443 * * * * * 2426 * * * 1885 * * * * 4 0 * * * * * * 2694 0 0 F 5 * * * * 509 * * * * 2203 * * * * * * * 4833 4480 * 5 0 * * * * * * 2910 0 0 W 6 * * * * 3896 * * 4684 * 1042 4441 * 5068 * * 3600 3553 3294 3992 * 6 0 * * * * * * 3101 0 0 S 7 2265 * 4124 * 5572 5072 5290 3569 * 3816 * 5503 5096 2509 * 2235 * 4771 5211 * 7 0 * * * * * * 3109 0 0 A 8 2951 * * 5267 * 3071 2495 5515 * 3592 2748 3010 * 3227 * 3971 * * * * 8 0 * * * * * * 3132 0 0 L 9 5670 * * * 3038 * * 2370 * 878 5672 * * * * * * 3301 * * 9 0 * * * * * * 3129 0 0 Y 10 2756 * * * 2507 4020 * 3380 * 5448 * * * * * 6073 1724 4317 * 2968 10 0 * * * * * * 3129 0 0 I 11 * 4930 * * * * * 1714 * 3796 * * * * * 4852 3007 1333 * 4859 11 0 * * * * * * 3129 0 0 F 12 * * * * 154 * * * * 3304 * * * * * * * * * * 12 0 * * * * * * 3219 0 0 V 13 2821 * * * 5654 4503 * 2793 * 4294 3972 * * * * 3969 4286 1250 * * 13 0 * * * * * * 3219 0 0 L 14 5293 * * * 5357 * * 4968 * 204 * * * * * * 5135 5538 * * 14 0 * * * * * * 3219 0 0 T 15 596 * * * * * * * * * * * * * * 1780 4403 * * * 15 0 * * * * * * 3219 0 0 A 16 3174 2211 * * 5357 2689 * 3154 * 4018 * 4689 * * * 3391 3277 3600 * * 16 0 * * * * * * 3219 0 0 F 17 * * * * 1032 * * 1951 * 3667 4968 * * * * * * 3552 5366 4953 17 0 * * * * * * 3219 0 0 L 18 3956 * * * * * * 1911 * 2735 * * * * * * * 945 * * 18 0 * * * * * * 3219 0 0 G 19 * * * * * 0 * * * * * * * * * * * * * * 19 0 * * * * * * 3189 0 0 Y 20 * * * * 1953 * 4240 5146 * 5837 * 5351 * * * * * 4774 4871 868 20 0 * * * * * * 3189 0 0 E 21 4902 * * 2068 2933 * 3322 * 4517 5721 * * * 3559 * 4713 * 5475 * 1791 21 0 * * * * * * 3189 0 0 L 22 4531 3272 * * * * * 4495 * 2723 * * * * * 5250 3231 931 * * 22 0 * * * * * * 3189 0 0 I 23 * * * * * * * 1049 * * * * * * * * * 953 * * 23 0 * * * * * * 3189 0 0 T 24 5039 * * * * 5146 * * 5351 5780 5769 3731 * * 4350 2036 4580 * 1088 * 24 0 * * * * * * 3189 0 0 R 25 4208 * 5108 * * 2380 * * 2139 * * 2496 * 5551 2494 3238 5985 * * * 25 0 * * * * * * 3197 0 0 V 26 * * * * * * * * * * * * * * * * * 0 * * 26 0 * * * * * * 3197 0 0 P 27 4237 * 5108 5103 * * * * * * * * 1534 * * 2647 1381 * * * 27 0 * * * * * * 3197 0 0 V 28 3507 * * * * * 3004 * * * * 4258 882 6113 * 3778 4050 4482 * * 28 0 * * * * * * 3197 0 0 I 29 1085 * * * * * * 3723 5108 2510 * * * * * 3306 2763 * * * 29 0 * * * * * * 3197 0 0 L 30 * * * * 5265 * * * * 38 * * * * * * * * * * 30 0 * * * * * * 3197 0 0 H 31 * * * * 5103 * 43 * * * * * * * * * * * * * 31 0 * * * * * * 3197 0 0 T 32 * * * * * * * * * * * * * * * 2016 410 * * * 32 0 * * * * * * 3197 0 0 P 33 * * * * * * * * * * * * 25 * * * 5879 * * * 33 0 * * * * * * 3197 0 0 L 34 * * * * * * * * * 0 * * * * * * * * * * 34 0 * * * * * * 3197 0 0 X 35 * * * * * * * 5099 * 5423 78 * * * * * * * * * 35 0 * * * * * * 3187 0 0 S 36 2648 * * * * 5983 * * * * * * * * * 278 * * * * 36 0 * * * * * * 3197 0 0 G 37 4670 * * * * 1792 * 4914 * 3964 4709 * * 4730 * * 5103 1090 * * 37 0 * * * * * * 3197 0 0 S 38 2919 * * * * * * * * * 4545 5879 * * * 3502 475 * * * 38 0 * * * * * * 3197 0 0 N 39 * * * * * * * * * * * 0 * * * * * * * * 39 0 * * * * * * 3197 0 0 F 40 109 * * * 4482 * * * * * * * * * * 5171 * * * * 40 0 * * * * * * 3197 0 0 I 41 * * * * 5551 * * 468 * 2428 * * * * * * * 3839 * * 41 0 * * * * * * 3197 0 0 H 42 5265 * 5487 * * * 2374 * * * * * * * * 398 * * * * 42 0 * * * * * * 3197 0 0 G 43 2936 * * * * 343 * * * * * * * * * 3627 * * * * 43 0 * * * * * * 3197 0 0 V 44 * * * * * * * 1050 * 4004 3986 * * * * * 3789 1647 * * 44 0 * * * * * * 3197 0 0 V 45 4784 * * * * * * 1579 * * * * * * * 4485 1795 1755 * * 45 0 * * * * * * 3197 0 0 V 46 2439 * * * * * * 1675 * 2123 * * * * * * * 1874 * * 46 37 5318 * 3459 138 * * 3197 1000 0 V 47 5813 * * * * * * 2008 * 1845 * * * * * * 5106 1230 * * 47 0 * * * * * * 3197 0 0 G 48 4255 * * * * 129 * * * * * * * * * 4914 * * * * 48 0 * * * * * * 3197 0 0 A 49 964 5551 * * * 1983 * * * * * * * * * 2641 5318 5171 * * 49 54 4761 * 1291 758 * * 3197 1531 0 X 50 * * * * * * * 2280 * 1412 1456 * * * * 5305 * 5142 * * 50 0 * * * * * * 3187 0 0 V 51 4847 5813 5318 5681 * * 4795 2246 * 1476 4292 * * * * 4858 4248 2658 * * 51 0 * * * * * * 3197 0 0 V 52 2163 * * 4384 * 5752 * 4177 6076 2366 4389 * 5318 2354 5502 * * 2684 * * 52 21 6120 * 0 * * * 3197 1000 0 L 53 1897 5827 * 5318 4671 5502 * 2979 * 2650 3254 * * * * * 4067 3711 * 3314 53 24 5925 * 0 * * * 3197 1000 0 G 54 2945 * * * * 635 * 4703 * * * 5096 * * 4864 3008 * * * * 54 115 3709 * 3160 171 * * 3195 1890 0 H 55 5727 * 5505 3409 * 2649 2877 6354 * 3775 6078 4462 4053 6187 * 2188 3899 3980 * * 55 68 4447 * 1759 505 * * 3195 1753 0 A 56 2752 * 4056 3480 * 2275 4828 * 4319 5489 * * 3947 4196 * 2527 3993 4970 * * 56 98 * 3924 * * * * 3195 0 0 E 57 3013 * 4080 3403 4428 3956 4666 * 3669 3334 * 4349 5423 * 4645 4631 2776 4749 * 4093 57 61 4599 * 1000 1000 293 2443 3207 1310 1551 T 58 * * 4694 * 4199 2749 * 5144 4995 3857 5784 2675 4447 5856 * 3032 2505 3667 6104 * 58 32 5511 * 3000 193 0 * 3197 1000 1000 G 59 4758 * 5953 5675 * 2677 * 5505 * 4251 * 5040 2573 5810 5475 2743 2570 4486 3392 * 59 100 3898 * 1000 1000 * * 3195 1801 0 L 60 3456 5981 * * 4908 3333 * 5305 * 1540 * 5415 3958 * * 4996 4028 2696 5188 5096 60 0 * * * * * * 3195 0 0 E 61 2462 * * 3582 * 3931 * 4768 * 4440 * * 3834 4466 * 2440 2572 3306 * 5810 61 0 * * * * * * 3195 0 0 K 62 4575 * * 6345 * * 5522 5736 2602 3854 6048 * * 2909 5151 3006 1950 3856 * 4552 62 0 * * * * * * 3195 0 0 L 63 2688 * * * 4518 4465 * 2500 * 2502 * * * * * 5143 3084 2485 3686 * 63 19 6226 * 1000 1000 * * 3195 1000 0 I 64 3956 * * * 3505 * * 3417 * 672 3715 * * * * 5096 * 5583 * * 64 0 * * * * * * 3195 0 0 G 65 1918 5583 * * * 911 * 5157 * 4839 * 5736 * * * 3533 * 6098 * * 65 0 * * * * * * 3195 0 0 F 66 1926 5085 * * 1682 4049 * * * 2730 4058 * * * * 5675 4018 4525 * * 66 0 * * * * * * 3195 0 0 L 67 2888 * * * 3434 5304 * 2432 * 1724 * * * * * * 4632 2194 * * 67 0 * * * * * * 3195 0 0 G 68 224 * * * * 4079 * * * * * * * * * 3565 * * * * 68 0 * * * * * * 3195 0 0 V 69 3157 5444 * * 5471 * * 2725 * 3801 5068 * * * * * 2261 1392 * * 69 0 * * * * * * 3195 0 0 I 70 2107 * * * 2187 3586 * 3283 * 2822 * * * * * * 3615 2843 * * 70 0 * * * * * * 3195 0 0 L 71 3687 * * * 2742 * * 3329 * 1037 3635 * * * * 5727 * 3530 * * 71 0 * * * * * * 3195 0 0 G 72 963 * * * * 2622 * * * * * * * * * 1695 5981 * * * 72 0 * * * * * * 3195 0 0 A 73 1850 5304 * * 5522 6187 * * * 4083 4787 * * * * 1841 1799 * * * 73 0 * * * * * * 3195 0 0 A 74 4698 * * * 4256 4461 * 1585 * 4240 4026 * * * * 5475 * 1345 * * 74 0 * * * * * * 3195 0 0 N 75 * * * * * * * * * * * 0 * * * * * * * * 75 0 * * * * * * 3195 0 0 A 76 4461 * * * * * * 1356 * 3317 4986 * * * * * 5096 1312 * * 76 0 * * * * * * 3195 0 0 A 77 2432 * * * 1707 5798 * 3950 * * * * * * * 4058 * 1452 * * 77 0 * * * * * * 3195 0 0 G 78 * * * * * 0 * * * * * * * * * * * * * * 78 0 * * * * * * 3195 0 0 G 79 * * * * * 0 * * * * * * * * * * * * * * 79 0 * * * * * * 3196 0 0 Y 80 * * * * 211 * * 5437 * * * * * * * * 5346 * * 3496 80 0 * * * * * * 3196 0 0 A 81 2368 * * * 3939 4503 * 3195 * 1853 4697 * * * * * 6294 3056 4033 3673 81 0 * * * * * * 3196 0 0 V 82 * * * * * * * 2795 * * 4552 * * * * * * 298 * * 82 0 * * * * * * 3196 0 0 T 83 * * * * * * * * * * * * * * * 4270 77 * * * 83 0 * * * * * * 3196 0 0 V 84 * * 1649 4805 * 3949 4274 * 3435 * * 3331 * 2796 3843 * 4153 5435 * 4509 84 0 * * * * * * 3196 0 0 R 85 * * * * * * * * 3146 * * * * * 173 * * * * * 85 0 * * * * * * 3196 0 0 X 86 * * * * * * * * * * 0 * * * * * * * * * 86 0 * * * * * * 3185 0 0 L 87 * * * * * * * * * 0 * * * * * * * * * * 87 0 * * * * * * 3196 0 0 E 88 * * 1528 1426 * * * * 2666 * * * * 3018 * * * * * * 88 0 * * * * * * 2959 0 0 X 89 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 89 0 * * 0 * * * 1000 0 0 //