HHsearch 1.5 NAME c4o66A_ FAM FILE c4o66A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4o66A_.a3m DATE Sat May 17 08:14:20 2014 LENG 67 match states, 67 columns in multiple alignment FILT 24 out of 28 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.4574 2.5848 SEQ >ss_dssp CCCEEEEEETTEEEEEECCCHHHHHHHHHCTTCEEETTTTEEECCGGGHHHHHHHHTTCTTCCCCCC >sa_dssp EEECDEBECEEEEDECDDDDEDBCEBBEEBECDDDDEECDCCDCDEEBCDDBCECBEDCEECEDEEE >ss_pred CEEEEEEEECCEEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCC >ss_conf 9001687645749999158999999985063234575433564438889999999503554410559 >Consensus xxxgxcvxsxxRFxVxxxYxxxlIxiFKxipSrxYDpxtkxWsFxlxDyxxLxxxxxxlxxVxLepL >c4o66A_ FLRGACIKTGDRFRVKIGYNQELIAVFKSLPSRHYDSFTKTWDFSMSDYRALMKAVERLSTVSLKPL >UniRef50_Q7Q4J3(118-175:722) AGAP008426-PA n=3 Tax=Culicidae RepID=Q7Q4J3_ANOGA E=7e-05 s/c=0.84 id=42% cov=82% ------IVSDTRFVVETnGFNEQMIDIFKQIPSKSYEPNTKKWTFEMKDYSLLQ---ERIATLN---- >UniRef50_UPI000180CA5B(170-233:831) PREDICTED: similar to MGC115661 protein n=1 Tax=Ciona intestinalis RepID=UPI000180CA5B E=2e-12 s/c=1.15 id=34% cov=96% --NGKCyLISDTHFEVEMPYNNKAVAIFKSLPSKVYDINTRQWSFHLTDYNQLVSSINKEQDLHLE-- >UniRef50_Q9VMX6(154-213:755) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 n=12 Tax=Drosophila RepID=SMAL1_DROME E=7e-09 s/c=1.03 id=34% cov=88% ------LISTHRFAAQTsGYHEQLVTVFKNMPTKCYDGQTRIWSFDLSDYQSLKTHAADLkPYVHM--- >UniRef50_Q8MNV7(109-169:690) Putative SMARCAL1-like protein n=5 Tax=Caenorhabditis RepID=SMAL1_CAEEL E=7e-06 s/c=0.85 id=29% cov=88% ---------GDRIKIEFyPFHSAVIDLIKQVPSRNYDPAKRSWTVASSDHITISNILKNATAvkVELEPL >UniRef50_Q8BJL0-3(289-356:574) Isoform 3 of SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 n=2 Tax=Mus musculus RepID=Q8BJL0-3 E=2e-20 s/c=1.47 id=37% cov=101% FVTGKCmLISRVRFEVDIGYSEAVIGLFKQMESRSYDIKTRKWSFLLEEHNKLIARSRELKQVQLDPL >UniRef50_UPI000186E53B(77-129:657) conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186E53B E=2e-12 s/c=1.38 id=35% cov=78% --------NEDRFIADMNYHAPSIEVFKTIPGKLYDSVLKKWTFPLSEHSNLTSKLRNL-------- >UniRef50_A8Q9V0(168-227:741) Helicase conserved C-terminal domain containing protein n=1 Tax=Brugia malayi RepID=A8Q9V0_BRUMA E=1e-10 s/c=1.12 id=28% cov=81% ------------FQVQFtPFSQSILSALKTIPSRIYIPKITAWSFPLEDICTVENVLQSLDDVSLE-- >UniRef50_B0SBH2(62-126:428) Tyrosine site-specific recombinase XerC n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SBH2_LEPBA E=0.0006 s/c=0.70 id=27% cov=66% -IKLRYVMNDKRFHLQFPYSELYIKIVKSIPKAMYHPEDKTWSF----------------------- >UniRef50_UPI0001792183(77-144:657) PREDICTED: similar to MGC115661 protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792183 E=2e-16 s/c=1.27 id=35% cov=97% ---GTCeLTSKERFTVHVTYHQQLIDTFKTISSKNYDPKTSEWSFLIKDHDQLMISIKPLePDVKIEKL # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * F 1 * * * * 947 * * 1602 * * * * * * * * * * * 2718 1 0 * * * * * * 2328 0 0 L 2 * * * * * * * 1521 * 2712 * * * * * * 3796 1228 * * 2 0 * * * * * * 2743 0 0 R 3 * * * * * * * * 1211 * * 2709 * 3078 2580 * 2949 * * * 3 0 * * * * * * 2813 0 0 G 4 * * * * * 202 * * * 2938 * * * * * * * * * * 4 0 * * * * * * 2884 0 0 A 5 4253 * * * * * * * 1155 * * * * 3182 1949 4021 3882 * * * 5 0 * * * * * * 2904 0 0 C 6 * 198 * * * * * * * * * * * * * * * * * 2963 6 625 1507 * 0 * * * 2904 2389 0 I 7 * * * * * * * 1984 * 1872 4054 * * * * * * 1273 * * 7 180 3095 * 0 * * * 3322 1560 0 K 8 * * * * * * * 1226 3381 4454 3638 * 4587 * 3717 4628 3952 2968 * * 8 156 3285 * 0 * * * 3322 1524 0 T 9 * * * * * * 4690 * * * * 2382 * 4248 * 757 4632 4551 * 4574 9 0 * * * * * * 3488 0 0 G 10 4235 * 2331 3574 * 1863 * * 4278 * * * 3467 * 3021 4758 3520 * * * 10 113 3734 * 0 * * * 3629 1443 0 D 11 3855 * 1828 3602 * * 4255 * 4055 * * 2897 * * 4486 3327 2851 4751 * * 11 51 4843 * 0 * * * 3629 1000 0 R 12 * * * * * * 4335 * * * * * * * 132 * * * * 4721 12 0 * * * * * * 3629 0 0 F 13 * * * * 202 * * 3665 * 4275 * * * * * * * * * * 13 0 * * * * * * 3777 0 0 R 14 4339 * * 1800 * * 4182 3490 3665 * * * * 2585 3352 4434 4385 3610 * * 14 0 * * * * * * 3777 0 0 V 15 2622 * * * * * * 3665 * 3374 * * * * * * * 595 * * 15 0 * * * * * * 3777 0 0 K 16 * * 1826 1715 * * 3372 * 3965 4993 * * * 2514 * * 4434 * * * 16 0 * * * * * * 3777 0 0 I 17 4358 4434 * * 2290 * * 1622 * * 3404 * * * * * 3501 2374 * * 17 472 1841 * 0 * * * 3777 2798 0 G 18 * * * * * 1292 * * * * * 4392 1554 * 4358 3227 4385 * * * 18 0 * * * * * * 3777 0 0 Y 19 * * * * 2135 * * * * * * * * * * * * * * 373 19 0 * * * * * * 3777 0 0 N 20 * * * * 4594 * 1403 * * * * 1925 * 4275 * 1913 * * * * 20 0 * * * * * * 3777 0 0 Q 21 2125 * * 2078 * * * * * * * 4417 3512 2105 * 3665 * 3504 * * 21 0 * * * * * * 3777 0 0 E 22 2808 * 2424 3287 * 4358 * * 3425 4182 * * 3490 2238 * 3824 * * * * 22 0 * * * * * * 3777 0 0 L 23 4417 * * * * * * 3824 * 1020 3610 * * * * 4392 * 2287 * 4182 23 0 * * * * * * 3777 0 0 I 24 * * * * * * * 504 * 3824 * * * * * * 4358 2512 * * 24 0 * * * * * * 3777 0 0 A 25 1664 * 2594 2922 * 3527 * * 4182 5062 * * * 4358 * 3824 3386 * * * 25 0 * * * * * * 3777 0 0 V 26 3185 * * * * * * 2087 * 1922 * * * * * * 3486 1730 * * 26 0 * * * * * * 3777 0 0 F 27 * * * * 407 * * 3665 * 3158 * * * * * * * 4182 * * 27 0 * * * * * * 3777 0 0 K 28 * * * * * * * * 0 * * * * * * * * * * * 28 0 * * * * * * 3777 0 0 S 29 * * * * * * * * 4802 * * 4339 * 1693 * 1782 1668 * * * 29 0 * * * * * * 3777 0 0 L 30 * * * * * * * 1031 * 2814 1787 * * * * * * 3665 * * 30 0 * * * * * * 3777 0 0 P 31 4434 * 3131 4832 * * * * * * * * 573 * * 2919 * * * * 31 0 * * * * * * 3777 0 0 S 32 * * * * * 4392 * * 4182 * * * * * * 372 3004 * * * 32 0 * * * * * * 3777 0 0 R 33 4182 * * * * * * * 1106 * * * * * 1058 * * * * * 33 0 * * * * * * 3777 0 0 H 34 * 4339 * * * * 4829 3824 5085 4392 4182 1722 * 4358 3605 2109 * 4417 * * 34 0 * * * * * * 3777 0 0 Y 35 * * * * * * * * * * * * * * * * * * * 0 35 0 * * * * * * 3777 0 0 D 36 * * 258 4653 * * 4204 3845 * * * * * * * * * * * * 36 0 * * * * * * 3767 0 0 S 37 4538 * * * * 4351 * 3549 * * 2987 * 1012 * * 2927 * 3857 * * 37 0 * * * * * * 3767 0 0 F 38 2198 * 4994 4204 4837 * * * 1523 * * 3485 * 3348 * * 4807 3469 * * 38 0 * * * * * * 3767 0 0 T 39 * * 4204 * * * * 3845 3628 4403 * * * 4538 * 4630 589 * * * 39 0 * * * * * * 3767 0 0 K 40 * * * * * * * * 1097 * * * * * 1267 4400 3845 * * * 40 0 * * * * * * 3767 0 0 T 41 3845 * * 4400 * * * 4351 1494 * 5058 4504 * 4335 3438 3628 2457 * * * 41 0 * * * * * * 3767 0 0 W 42 * * * * * * * * * * * * * * * * * * 0 * 42 0 * * * * * * 3767 0 0 D 43 * * 3822 * * * * * * * * 2570 * * * 859 2255 * * * 43 0 * * * * * * 3767 0 0 F 44 * * * * 122 * * * * * * * * * * * * 3628 * * 44 0 * * * * * * 3767 0 0 S 45 2940 * 3280 4526 * * 3309 * * 2311 * * 2976 * * 1767 * * * * 45 0 * * * * * * 3661 0 0 M 46 * * * * * * * 4355 * 567 2797 * * * * 3559 4401 * * * 46 0 * * * * * * 3661 0 0 S 47 * * * 1555 * * * * 2825 * * 4915 * * * 1439 3598 4878 * * 47 0 * * * * * * 3661 0 0 D 48 * * 430 2237 * * * * * * * * * * * 4459 * * * * 48 0 * * * * * * 3661 0 0 Y 49 * * * * * * 1369 3725 * * * * * * * * * * * 896 49 0 * * * * * * 3661 0 0 R 50 4401 3725 4355 4355 * 3762 * 3559 4548 * * 2425 * 3090 4766 2074 * * * * 50 0 * * * * * * 3661 0 0 A 51 3839 * * 3372 * * * * 2712 4526 4983 4279 5031 2890 4548 3482 1962 * * * 51 0 * * * * * * 3661 0 0 L 52 * * * * 3493 * * 3559 * 414 * * * * * * * 3725 * * 52 0 * * * * * * 3661 0 0 M 53 4401 * * 3725 * * * 3736 4270 * 1246 * * 4526 * 3559 4279 2750 * * 53 64 * 4526 * * * * 3661 0 0 K 54 3036 * 4470 2372 * * * 4299 2652 * * 2572 * 4333 * 2669 4192 * * * 54 0 * * * * * 0 3638 0 1000 A 55 2783 * 4478 4833 * * 4192 3512 1768 4470 * * * 4932 3755 3235 * 3633 * * 55 0 * * * * * 0 3638 0 1000 V 56 2354 * * * * * * 2667 * 1469 * * * * * 4692 * 2017 * * 56 0 * * * * 0 * 3638 0 1000 E 57 3583 * * 3641 * * * 3531 2118 * * 3394 * 2843 2263 3704 * * * * 57 0 * * * * * * 3661 0 0 R 58 4878 4738 4270 3631 * 4862 3852 * 3400 * * 2081 3406 * 3175 2679 * * * * 58 0 * * * * * * 3661 0 0 L 59 3500 * * 4141 4266 * * 2799 * 681 * * 4819 * * * * * * * 59 181 3088 * 0 * * * 3701 1536 0 S 60 2813 * 2763 * * * * * 3283 * * * 1450 3939 * 3622 3394 * * * 60 0 * * * * * * 3630 0 0 T 61 2780 4691 2275 3962 * 4637 * * * * * * * 2953 * 2847 2504 * * 4050 61 154 3308 * 1000 1000 * * 3630 1000 0 V 62 * * * * * * * 3583 * 2392 * * * * * * * 462 * * 62 0 * * * * * * 3540 0 0 S 63 * * * 2289 * * 2317 * 3874 * * 2864 * 2875 * 2241 4595 * * * 63 0 * * * * * * 3540 0 0 L 64 * * * * * * * 3812 * 416 3880 * * * * * 4227 4107 * * 64 0 * * * * * * 3494 0 0 K 65 4228 * 2722 848 * * * * 3354 * * * * 3448 4322 * * * * * 65 0 * * * * * * 3384 0 0 P 66 * * * 3304 * * * * 3411 * * * 313 * * * * * * * 66 0 * * * * * * 3004 0 0 L 67 * * * * * * * * * 0 * * * * * * * * * * 67 0 * * 0 * * * 3004 0 0 //