HHsearch 1.5 NAME c4nn7A_ FAM FILE c4nn7A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4nn7A_.a3m DATE Sat Mar 22 08:14:40 2014 LENG 108 match states, 108 columns in multiple alignment FILT 5 out of 9 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.0 EVD 0.4137 -0.2891 SEQ >ss_dssp CCGGGSCHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCSSHHHHHHHHHHHHHSCBTTBTTGGGSHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHH HHHHHSCC >sa_dssp EEBDDBECECADCCBCEDACECADECBDECDDDCEBEBDCCCDAACDABCCACCEDECAEDBCECEBBCDBCEABCECBDECEECDEDCDBBBBBABBAA DBADEBED >ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH HHHHHCCC >ss_conf 9766688999999999999999998631011222101478448999978863156888712478999766599998628982688999999999999999 99960889 >Consensus YnFtnCdFekIxxxYxxxIxxdLxkymxGxkfxqxxdcxsrpxCLxkIexxTfnpxxgCxSlaxexFAxxTxaaLxxxCPgYsexqNxClxQxsqlxgLW xxfxqsxx >c4nn7A_ YNFSNCNFTSITKIYCNIIFHDLTGDLKGAKFEQIEDCESKPACLLKIEYYTLNPIPGCPSLPDKTFARRTREALNDHCPGYPEVQNICLQQTSQILRLW YSFMQSPE >UniRef50_Q969D9(29-151:159) Thymic stromal lymphopoietin n=7 Tax=Eutheria RepID=TSLP_HUMAN E=6e-15 s/c=0.66 id=43% cov=96% YDFTNCDFEKIKAAYLSTISKDLITYMSGTKsteFNNTVSCSNRPHCLTEIQSLTFNPTAGCASLAKEMFAMKTKAALAIWCPGYSETQinatqamkkrr krkvttNKCLEQVSQLQGLWRRF----- >UniRef50_UPI0000DA4125(79-196:196) PREDICTED: similar to thymic stromal lymphopoietin n=3 Tax=Rattus norvegicus RepID=UPI0000DA4125 E=7e-44 s/c=1.50 id=63% cov=99% YNFSNCNFEMILRIYHATIFRDLLKDLNGILFDQIEDCDSRTACLLKIDHHTFNPVPGCPSLPEKAFALKTKAALINYCPGYSeterngtlemtrEIRNI CLNQTSQILGLWLSCIQS-- >UniRef50_D2HBD8(25-113:115) Putative uncharacterized protein (Fragment) n=2 Tax=Laurasiatheria RepID=D2HBD8_AILME E=2e-31 s/c=1.53 id=39% cov=81% YNFTGCDFEKIRKKYQEVIYQALEKYMNGTKSTEFNNpiyCEDPPDCLAKIERITFHPTHDCTSLAEEIFAIGTRATLTLQCPSYSGMQ----------- ----------- >UniRef50_UPI00005A05ED(112-310:314) PREDICTED: similar to thymic stromal lymphopoietin isoform 1 n=1 Tax=Canis lupus familiaris RepID=UPI00005A05ED E=3e-28 s/c=0.63 id=38% cov=96% YNFIDCDFEKIRWKYQEVIYQALEKYMDGVATRQkagpwerglpapccsrtaasvpgalgralwgrasralptathrgTRDAGSrgraraaaspgtrrlt rvshtlllpcrqehgvqppRPDCLARIERLTLHRIRGCASGAREAFAEGTVAALAAECPGYAAapinntqakkkrkkrgvTTNKCREQVAHLIGLWRRF- ---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Y 1 * * * * * * * * * * * * * * * * * * * 0 1 0 * * * * * * 2114 0 0 N 2 * * 2314 * * * * * * * * 324 * * * * * * * * 2 0 * * * * * * 2114 0 0 F 3 * * * * 0 * * * * * * * * * * * * * * * 3 0 * * * * * * 2114 0 0 S 4 * * * * * * * 2302 * * * * * * * 1337 1317 * * * 4 0 * * * * * * 2114 0 0 N 5 * * 2302 * * 2320 * * * * * 744 * * * * * * * * 5 0 * * * * * * 2114 0 0 C 6 * 0 * * * * * * * * * * * * * * * * * * 6 0 * * * * * * 2114 0 0 N 7 * * 727 * * * * * * * * 1337 * * * * * * * * 7 0 * * * * * * 2114 0 0 F 8 * * * * 0 * * * * * * * * * * * * * * * 8 0 * * * * * * 2114 0 0 T 9 * * * 326 * * * * * * * * * * * * 2306 * * * 9 0 * * * * * * 2114 0 0 S 10 * * * * * * * * 727 * 2369 * * * * 2306 * * * * 10 0 * * * * * * 2114 0 0 I 11 * * * * * * * 0 * * * * * * * * * * * * 11 0 * * * * * * 2114 0 0 T 12 * * * * * * * * 2314 2369 * * * * 1311 * 2306 * * * 12 0 * * * * * * 2114 0 0 K 13 2314 * * * * * * * 1313 * * * * * 2369 * * * 2302 * 13 0 * * * * * * 2114 0 0 I 14 2314 * * * * * * 1337 1311 * * * * * * * * * * * 14 0 * * * * * * 2114 0 0 Y 15 * * * * * * * * * * * * * * * * * * * 0 15 0 * * * * * * 2114 0 0 C 16 * 2306 * * * * 2369 * * 2314 * * * 1311 * * * * * * 16 0 * * * * * * 2114 0 0 N 17 2369 * * 1311 * * * * * * * 2306 * * * 2314 * * * * 17 0 * * * * * * 2114 0 0 I 18 * * * * * * * 2306 * * * * * * * * 1341 1311 * * 18 0 * * * * * * 2114 0 0 I 19 * * * * * * * 0 * * * * * * * * * * * * 19 0 * * * * * * 2114 0 0 F 20 * * * * 1337 * * * * * * * * * * 2314 * * * 1311 20 0 * * * * * * 2114 0 0 H 21 * * * * * * 2306 * 2314 * * * * 1311 2369 * * * * * 21 0 * * * * * * 2114 0 0 D 22 1311 * 744 * * * * * * * * * * * * * * * * * 22 0 * * * * * * 2114 0 0 L 23 * * * * * * * * * 0 * * * * * * * * * * 23 0 * * * * * * 2114 0 0 T 24 * * * 1311 * * * 2314 * 2369 * * * * * * 2306 * * * 24 0 * * * * * * 2114 0 0 G 25 * * * * * 2306 * * 745 * * * * * * * 2314 * * * 25 0 * * * * * * 2114 0 0 D 26 * * 1337 * * * * * * * * * * * * * * * * 727 26 0 * * * * * * 2114 0 0 L 27 * * * * * * * * * 1337 727 * * * * * * * * * 27 0 * * * * * * 2114 0 0 K 28 * * 2302 * * * * * 2306 * * 1344 * * * 2314 * * * * 28 0 * * * * * * 2114 0 0 G 29 * * * * * 0 * * * * * * * * * * * * * * 29 0 * * * * * * 2114 0 0 A 30 2306 * * * * * * 2369 * * * * * * * * 1317 2302 * * 30 0 * * * * * * 2114 0 0 K 31 2302 * * * * * * * 728 2369 * * * * * * * * * * 31 324 2314 * 1585 585 * * 2114 1000 0 F 32 * * * * 744 * * * * * * * * * * 2320 2302 * * * 32 0 * * * * * * 2114 0 0 E 33 * * 2369 2306 * * * * * * * 2314 * * 2302 * 2320 * * * 33 0 * * * * * * 2114 0 0 Q 34 * * * 2320 * * * * * * * 2314 * 740 * * * * * * 34 327 2302 * 5459 33 * * 2114 1000 0 I 35 * * * * 2320 * * 1337 * * * * * * * * 1308 * * * 35 0 * * * * * * 2114 0 0 E 36 * * * 1337 * * * * * * * 2320 * * 2302 * * 2314 * * 36 0 * * * * * * 2114 0 0 D 37 * * 740 * * * * * * * * 2320 * * * 2314 * * * * 37 323 2320 * 1585 585 * * 2114 1000 0 C 38 2302 327 * * * * * * * * * * * * * * * * * * 38 0 * * * * * * 2114 0 0 E 39 * * 2369 1313 * 2302 * * * * * * * * * 2314 * * * * 39 0 * * * * * * 2114 0 0 S 40 * * 2320 * * * * * * * * 2314 * * * 740 * * * * 40 327 2302 * 5129 42 * * 2114 1000 0 K 41 * * * * * * * * 2306 * * * 2320 * 743 * * * * * 41 0 * * * * * * 2114 0 0 P 42 * * * * * * * * * * * * 310 * * * 2369 * * * 42 0 * * * * * * 2114 0 0 A 43 1337 * 1311 * * * 2314 * * * * * * * * * * * * * 43 0 * * * * * * 2114 0 0 C 44 * 0 * * * * * * * * * * * * * * * * * * 44 0 * * * * * * 2114 0 0 L 45 * * * * * * * * * 0 * * * * * * * * * * 45 0 * * * * * * 2114 0 0 L 46 1311 * * * * * * * * 1337 * * * * * * 2314 * * * 46 0 * * * * * * 2114 0 0 K 47 * * * 2314 * * * * 746 * * * * * 2302 * * * * * 47 0 * * * * * * 2114 0 0 I 48 * * * * * * * 0 * * * * * * * * * * * * 48 0 * * * * * * 2114 0 0 E 49 * * 2369 724 * * * * * * * * * 2314 * * * * * * 49 0 * * * * * * 2114 0 0 Y 50 * * * * * * 2369 * * * * * * * 1311 2314 * * * 2306 50 0 * * * * * * 2114 0 0 Y 51 * * * * * * 2369 2320 * 1308 * * * * * * * * * 2306 51 0 * * * * * * 2114 0 0 T 52 * * * * * * * * * * * * * * * * 0 * * * 52 0 * * * * * * 2114 0 0 L 53 * * * * 749 * * * * 1304 * * * * * * * * * * 53 0 * * * * * * 2114 0 0 N 54 * * * * * * 1311 * * * * 744 * * * * * * * * 54 0 * * * * * * 2114 0 0 P 55 * * * * * * * * * * * * 327 * 2302 * * * * * 55 0 * * * * * * 2114 0 0 I 56 * * * * * * * 1304 * * * * * * * * 1317 2369 * * 56 0 * * * * * * 2114 0 0 P 57 2314 * * * * * 2320 * * * * * 1337 * 2302 * * * * * 57 0 * * * * * * 2114 0 0 G 58 * * 2320 * * 323 * * * * * * * * * * * * * * 58 0 * * * * * * 2114 0 0 C 59 * 0 * * * * * * * * * * * * * * * * * * 59 0 * * * * * * 2114 0 0 P 60 1308 * * * * * * * * * * * 1337 * * * 2320 * * * 60 0 * * * * * * 2114 0 0 S 61 * * * * * * * * * * * * * * * 0 * * * * 61 0 * * * * * * 2114 0 0 L 62 * * * * * 2302 * * * 327 * * * * * * * * * * 62 0 * * * * * * 2114 0 0 P 63 727 * * * * * * * * * * * 1337 * * * * * * * 63 0 * * * * * * 2114 0 0 D 64 * * 2306 1344 * * * * 2314 * * * * * 2302 * * * * * 64 0 * * * * * * 2114 0 0 K 65 * * * 727 * * * * 1337 * * * * * * * * * * * 65 0 * * * * * * 2114 0 0 T 66 1335 * * * * * * 2320 * * 2314 * * * * * 2306 * * * 66 0 * * * * * * 2114 0 0 F 67 * * * * 0 * * * * * * * * * * * * * * * 67 0 * * * * * * 2114 0 0 A 68 0 * * * * * * * * * * * * * * * * * * * 68 0 * * * * * * 2114 0 0 R 69 * * * 2302 * * * 2320 * 2369 2314 * * * 2306 * * * * * 69 0 * * * * * * 2114 0 0 R 70 * * * * * 1311 * * 1341 * * * * * 2306 * * * * * 70 0 * * * * * * 2114 0 0 T 71 * * * * * * * * * * * * * * * * 0 * * * 71 0 * * * * * * 2114 0 0 R 72 * * * * * * * * 1341 * * * * * 1313 * * 2302 * * 72 0 * * * * * * 2114 0 0 E 73 326 * * 2306 * * * * * * * * * * * * * * * * 73 0 * * * * * * 2114 0 0 A 74 323 * * * * * * * * * * * * * * * 2320 * * * 74 0 * * * * * * 2114 0 0 L 75 * * * * * * * * * 0 * * * * * * * * * * 75 0 * * * * * * 2114 0 0 N 76 1308 * * * * * * 2369 * * * 2306 * * * * 2320 * * * 76 0 * * * * * * 2114 0 0 D 77 2302 * 2306 * * * * 2314 * 2320 * 2369 * * * * * * * * 77 0 * * * * * * 2114 0 0 H 78 * * * 2302 * * 2306 * * * * * * 2320 * * * * 2314 2369 78 0 * * * * * * 2114 0 0 C 79 * 0 * * * * * * * * * * * * * * * * * * 79 0 * * * * * * 2114 0 0 P 80 * * * * * * * * * * * * 0 * * * * * * * 80 0 * * * * * * 2114 0 0 G 81 * * * * * 323 * * * * * * * * * 2320 * * * * 81 0 * * * * * * 2114 0 0 Y 82 * * * * * * * * * * * * * * * * * * * 0 82 0 * * * * * * 2114 0 0 P 83 2302 * * * * * * * * * * * 2306 * * 749 * * * * 83 310 2369 * 3585 126 * * 2114 1000 0 E 84 2302 * * 744 * 2320 * * * * * * * * * * * * * * 84 327 2302 * 4087 87 * * 2114 1000 0 V 85 * * * * * * * 2369 * * 2320 * * * * * 1308 2306 * * 85 0 * * * * * * 2114 0 0 Q 86 * * * * * * * * * * * * * 728 2369 * 2302 * * * 86 418 1991 * 4087 87 * * 2114 1000 0 N 87 * * * * * * * * * * * 0 * * * * * * * * 87 0 * * * * * * 1919 0 0 I 88 * * * * * * * 1057 945 * * * * * * * * * * * 88 0 * * * * * * 1919 0 0 C 89 * 0 * * * * * * * * * * * * * * * * * * 89 0 * * * * * * 1919 0 0 L 90 * * * * * * * * * 459 * * * * 1875 * * * * * 90 0 * * * * * * 1919 0 0 Q 91 * * * 945 * * * * * * * 2087 * 2028 * * * * * * 91 0 * * * * * * 1919 0 0 Q 92 * * * * * * * * * * * * * 0 * * * * * * 92 0 * * * * * * 1919 0 0 T 93 * * * * * * * * * * * * * * * * 1057 945 * * 93 0 * * * * * * 1919 0 0 S 94 1875 * * * * * * * * * * * * * * 459 * * * * 94 0 * * * * * * 1919 0 0 Q 95 * * * * * * 1875 * * * * * * 459 * * * * * * 95 0 * * * * * * 1919 0 0 I 96 * * * * * * * 1057 * 945 * * * * * * * * * * 96 0 * * * * * * 1919 0 0 L 97 * * * * * * * 1875 * 1057 * * * 2019 * * * * * * 97 0 * * * * * * 1919 0 0 R 98 * * * * * 406 * * * * * * * * 2028 * * * * * 98 0 * * * * * * 1919 0 0 L 99 * * * * * * * * * 0 * * * * * * * * * * 99 0 * * * * * * 1919 0 0 W 100 * * * * * * * * * * * * * * * * * * 0 * 100 0 * * * * * * 1919 0 0 Y 101 * * * * * * * * * 2087 * * * * 945 * * * * 2028 101 0 * * * * * * 1919 0 0 S 102 * * * * * * * * * * * * * * 945 1057 * * * * 102 0 * * * * * * 1919 0 0 F 103 * 2087 * * 387 * * * * * * * * * * * * * * * 103 0 * * * * * * 1919 0 0 M 104 * * * * * * * 1000 * * 1000 * * * * * * * * * 104 0 * * * * * * 1290 0 0 Q 105 * * * * * * * * * * * * * 0 * * * * * * 105 0 * * * * * * 1290 0 0 S 106 * * * * * * * * * * * * * * * 0 * * * * 106 0 * * * * * * 1290 0 0 P 107 * * * * * * * * * * * * 0 * * * * * * * 107 0 * * * * * * 1000 0 0 E 108 * * * 0 * * * * * * * * * * * * * * * * 108 0 * * 0 * * * 1000 0 0 //