HHsearch 1.5
NAME  c4n7zB_
FAM   
FILE  c4n7zB_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c4n7zB_.a3m 
DATE  Sat Jul  5 08:16:39 2014
LENG  29 match states, 29 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.1 
EVD   0.5212  4.4314 
SEQ
>ss_dssp
CCCCTTCCCCCHHHHHHHHHHTSTTTTCC
>sa_dssp
EEEEEEEEEEDEECCDEDDEEDDEEDEEE
>ss_pred
CCCCCHHHHHHHHHHHHHHHHCCCCCCCC
>ss_conf
96533888656899999997366610159
>Consensus
dddixdexfyddhleayfeqlaipgmxye
>c4n7zB_
DDDIDDEMFYDDHLEAYFEQLAIPGMIYE
>UniRef50_Q8C769(294-319:599) Putative uncharacterized protein (Fragment) n=2 Tax=Mus musculus RepID=Q8C769_MOUSE  E=2e-06 s/c=2.06 id=85% cov=93%
---INDEEFYDDHLEAYFEQLAIPGMMYE
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
D 1    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

D 2    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

D 3    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

I 4    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1083	0	0	

D 5    *	*	1000	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1083	0	0	

D 6    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1083	0	0	

E 7    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1083	0	0	

M 8    *	*	*	1000	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1083	0	0	

F 9    *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1083	0	0	

Y 10   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	10
       0	*	*	*	*	*	*	1083	0	0	

D 11   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1083	0	0	

D 12   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1083	0	0	

H 13   *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1083	0	0	

L 14   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1083	0	0	

E 15   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1083	0	0	

A 16   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1083	0	0	

Y 17   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	17
       0	*	*	*	*	*	*	1083	0	0	

F 18   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1083	0	0	

E 19   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1083	0	0	

Q 20   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1083	0	0	

L 21   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1083	0	0	

A 22   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1083	0	0	

I 23   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1083	0	0	

P 24   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1083	0	0	

G 25   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1083	0	0	

M 26   *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1083	0	0	

I 27   *	*	*	*	*	*	*	1000	*	*	1000	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1083	0	0	

Y 28   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	28
       0	*	*	*	*	*	*	1083	0	0	

E 29   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	29
       0	*	*	0	*	*	*	1083	0	0	

//