HHsearch 1.5 NAME c4n1kD_ FAM FILE c4n1kD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4n1kD_.a3m DATE Sat Jul 19 12:44:50 2014 LENG 94 match states, 94 columns in multiple alignment FILT 76 out of 80 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.6 EVD 0.4720 2.1115 SEQ >ss_dssp CCCCTTTTHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTSTHHHHHHCCHHHHHHHHHHHSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC >sa_dssp EECEBBDEBACEEAEEBDEEDBDBABECACECBEEECCEEBCEDBEEBECEDAAEBADECBEDEEADDBADEACDDBEEDDDEDEDEEEEEEEE >ss_pred CCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC >ss_conf 9402202787999974069999999999832212015789989964169989999999962978999999999998195999999999962149 >Consensus xxxxxxxxxLlxxLExLxxxelkxFKxxLxxxlxxxxxxipxxxlexadxxxladllxxxyxxxxAxxvtlxilxxmnxxdLaexxxxexxxxx >c4n1kD_ SSSFFPDFGLLLYLEELNKEELNTFKLFLKETMEPEHGLTPWNEVKKARREDLANLMKKYYPGEKAWSVSLKIFGKMNLKVLCERAKEEINWSA >UniRef50_C1BWE4(8-88:88) NACHT, LRR and PYD domains-containing protein 6 n=1 Tax=Esox lucius RepID=C1BWE4_ESOLU E=4e-17 s/c=1.10 id=24% cov=87% ---------LLAILDELGAAEVKRFQWYLNKGVLEGFPSIPKGRLEDKDRTDIVDTMVQAYNMDGAVTITVEILKKMNQNSLAGKLQENL---- >UniRef50_Q2KKT5(10-87:201) ASC n=9 Tax=Euteleostei RepID=Q2KKT5_SINCH E=2e-05 s/c=0.64 id=17% cov=69% -------------LEDLSQLDFEKFCRQLLD--RREEQRVRRSRVESKSFLDIADVLVSTFGEPNALQVAVEVLRQIDC--------------- >UniRef50_UPI0000F2D19C(2-90:130) PREDICTED: similar to pyrin n=1 Tax=Monodelphis domestica RepID=UPI0000F2D19C E=3e-16 s/c=0.97 id=27% cov=87% -------------LDELVEHELRKFKRKLYHiALKKCYKPIPWGKLEPAHCDDLAQMLVKYYGEKYALEVTLKVLKAIHQQDVADMLLKKIQQGS >UniRef50_D2I576(6-88:1490) Putative uncharacterized protein (Fragment) n=1 Tax=Ailuropoda melanoleuca RepID=D2I576_AILME E=1e-16 s/c=1.05 id=30% cov=86% ---------LAWYLDVMGKEELKEFQLRLSEKPLCGPSPGPtVAQLQQAGGLEVASHLVAQYGEQRAWDLALHTWEQMGLSGLCAQARAE----- >UniRef50_Q5F3J4(9-89:734) Putative uncharacterized protein n=4 Tax=Neognathae RepID=Q5F3J4_CHICK E=3e-14 s/c=0.98 id=27% cov=86% ---------LLEALEGLTLEDFQEFKKKLPHTDIKGGWNIGRDELEKvTHPSSLISYMGDSYREGAAMDIAISLFEEMNQRDLAEKILDE----- >UniRef50_Q16666(5-85:785) Gamma-interferon-inducible protein 16 n=32 Tax=Eutheria RepID=IF16_HUMAN E=6e-09 s/c=0.76 id=25% cov=81% ---------LLKGLEVINDYHFRMVKSLLSNDL-----KLNLKMREEYDKIQIADLMEEKFRGDAGLGKLIKIFEDIpTLEDLAETLKKE----- >UniRef50_Q4PLS0(9-95:1046) NACHT n=3 Tax=Murinae RepID=Q4PLS0_MOUSE E=2e-11 s/c=0.81 id=26% cov=89% -------FNLKDVLRKLDKTELNNFKRTLRSCSLPDTmKQINKLTMDLANGAQLAEILTDHCPSAWIKRVTVQILEEINRVDLAELVVKQI---- >UniRef50_UPI000175F657(8-85:799) PREDICTED: similar to NLR family, pyrin domain containing 3 n=1 Tax=Danio rerio RepID=UPI000175F657 E=1e-08 s/c=0.78 id=26% cov=79% -------------LDRLDGDQLKRFKWHFKDD-----GVTSAVDVEKSeDVSDTVDLMLAHCGPKGAANATLKCLRIIKLNDLVEEFENKLK--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 335 * * * * * * * * * * * * * * 2269 * * * * 1 0 * * * * * * 2090 0 0 S 2 1518 * * 2033 * * * * * * * * * * * 1298 * * * * 2 0 * * * * * * 2193 0 0 S 3 * * * * * * * * * * * * * * * 0 * * * * 3 0 * * * * * * 2512 0 0 F 4 2311 * 2343 * 734 * * * * * * * * * * * * * * * 4 0 * * * * * * 2512 0 0 F 5 * * * * 399 * * * * * * * * 2792 * * * * * 3360 5 0 * * * * * * 2994 0 0 P 6 * * * * * * * * * 3241 * * 3942 * 3195 887 2480 * * * 6 0 * * * * * * 3529 0 0 D 7 * * 1071 3195 * 4181 * * * * * 2601 * * * 3028 3794 * * * 7 0 * * * * * * 3529 0 0 F 8 * * * * 1005 * * * * * 3463 * * 3531 * * * 4362 3947 2245 8 0 * * * * * * 3756 0 0 G 9 * * 3982 * * 605 * * * 3686 * 2312 * * * * * * * * 9 0 * * * * * * 3967 0 0 L 10 * * * * * * * * * 127 * * * * 5190 * * 4134 * * 10 0 * * * * * * 5718 0 0 L 11 4032 * * * * * * * 5107 837 3158 * * 3062 5190 * 4409 4509 * * 11 0 * * * * * * 5718 0 0 L 12 3483 * 4623 4196 5589 * * 5389 2702 3684 * 6125 4360 4141 4054 3774 3917 * 2183 * 12 0 * * * * * * 5792 0 0 Y 13 3905 3567 * * 5256 2310 * 4671 * 3925 * * * * * 3927 3450 5169 * 1595 13 0 * * * * * * 5850 0 0 L 14 * * * * 3598 * * * * 188 4659 * * * * * * * * * 14 0 * * * * * * 6080 0 0 E 15 * * 2755 745 * 6065 * * 4620 5716 5251 * * 4022 4601 5963 * 5756 * 5879 15 0 * * * * * * 6080 0 0 E 16 4956 5063 2685 2022 5186 3864 4091 * 3642 * 5874 3642 5115 4048 4971 4524 * 5233 * 6287 16 0 * * * * * * 6080 0 0 L 17 * * * * * * * 3037 * 443 3669 * * * 5354 * * 4659 * * 17 0 * * * * * * 6080 0 0 N 18 5734 * 2912 3341 6031 3236 * 6398 4191 5191 * 2488 * 5868 4856 2674 3799 3721 * * 18 0 * * * * * * 6108 0 0 K 19 3719 * 2430 2256 * 5787 5624 * 2142 5353 * 5868 5546 2978 4397 5211 * * * * 19 0 * * * * * * 6108 0 0 E 20 3248 * 2991 1686 * 5037 4192 * 3628 6030 * 4973 * * 6248 4883 5653 4350 * 2954 20 0 * * * * * * 6116 0 0 E 21 6579 * 2884 849 * * 3476 * 5102 * * 5283 * 3359 5109 * 5837 * * 6588 21 0 * * * * * * 6116 0 0 L 22 * * * * 1209 * * * * 925 * * 5386 * * * * 5904 * * 22 0 * * * * * * 6116 0 0 N 23 * * 6044 2988 * * * 6034 1462 * 6767 4069 * 2770 2981 3203 6447 * 5755 * 23 0 * * * * * * 6116 0 0 T 24 6321 * 5474 2596 * * * 4250 1765 4907 5087 5657 * 4730 2598 5057 3073 5757 * * 24 0 * * * * * * 6116 0 0 F 25 * * * * 177 * * 4791 * 5151 * * * * * * * 4286 * * 25 0 * * * * * * 6116 0 0 K 26 * 6039 * * * * * * 393 * * 6070 * 2773 4754 * 5326 * * * 26 0 * * * * * * 6116 0 0 L 27 6172 * * 3085 3208 6163 6423 * 4030 2598 5344 * * 4703 3564 2405 * * 2825 5032 27 18 6340 * 0 * * * 6116 1000 0 F 28 * 4544 * * 3907 * 4033 * 2700 1463 * 5840 * 3901 3576 * 5657 6519 * 3134 28 0 * * * * * * 6116 0 0 L 29 5890 * * * 5072 * * 4418 * 141 * * * * * * * * * * 29 152 3523 6256 1308 746 * * 6116 2929 0 K 30 3880 5130 * 5160 * 4753 * 5391 2497 3911 5177 4131 4370 3798 3138 3151 4812 5756 3767 6349 30 14 6648 * 0 * 0 * 6111 1000 1000 E 31 4194 * 2477 2843 * 5044 4064 5333 2748 * 6326 3125 * 4177 4641 3842 3828 * * * 31 328 2727 4258 0 * * * 6116 3561 0 T 32 3638 5587 2228 2451 * 4098 4043 4768 5034 * * * 3084 * 5708 3196 3834 * * * 32 254 3446 3850 171 3164 1721 521 6073 2705 2204 M 33 * 5807 5255 * 4885 5846 4640 * 4866 1272 6452 * 3184 6279 * 3373 4864 3121 * 4797 33 181 5098 3498 2235 344 881 1130 6004 1536 2964 E 34 5741 * 5675 2551 * 4072 * 5321 4236 2482 * 3596 4778 2806 3368 3113 * * * * 34 206 4901 3328 0 * * 0 6050 1681 3046 P 35 5718 5711 4360 2804 5458 4715 4574 * 2462 3195 * 5538 2681 * 2985 4857 4710 * * * 35 58 4665 * 0 * * 0 5829 1473 3563 E 36 4778 6207 4307 2523 * 1272 4469 * 3978 5950 * 5715 * 4371 4845 5089 5626 4841 * * 36 62 * 4582 * * 2688 243 5829 0 3563 H 37 4677 4098 * 3594 2540 4487 3344 * 5997 2410 * * 5641 5302 * 4062 3584 5246 * 3542 37 73 5392 5305 0 * 2146 370 5632 1000 3359 G 38 5696 4200 5201 4888 5430 2955 * 6154 2703 5721 5411 4647 2479 3317 3884 3470 * * 5292 * 38 0 * * * * 1610 573 5632 0 3040 L 39 * 5300 6717 6211 * 4654 6236 * 2353 6301 * 5398 2046 3594 2865 2771 5604 4751 * * 39 0 * * * * 1060 943 5893 0 3061 T 40 * * * 4692 4255 5975 * 1022 * 2252 4900 6053 * * * * 4093 3582 * * 40 0 * * * * * 0 5969 0 2195 P 41 4874 * * * * 5461 * * * * * 3755 919 5766 4555 3163 2576 * * * 41 43 5975 6244 0 * 0 * 5969 1000 2195 W 42 4569 * * 6149 * * 5876 5919 2808 3619 4780 * 4978 4305 1750 6249 6053 4715 2294 * 42 19 6280 * 1000 1000 0 * 6184 1000 1000 N 43 2703 6013 2912 * 5876 1991 * 4932 3501 5575 4302 4360 * * * 3430 3667 5921 * * 43 0 * * * * * * 6186 0 0 E 44 4571 * 5921 2244 * * 6749 6415 3131 6866 3957 3734 5607 2066 3193 5265 4739 6068 * * 44 16 * 6473 * * * * 6186 0 0 V 45 * * * * * * * 3944 * 1207 3684 * 5296 3359 5319 * 5358 1990 * * 45 0 * * * * 0 * 6183 0 1000 K 46 * * 2591 940 * * 4389 * 2966 6095 * 5033 * 4111 5969 * 5804 * * * 46 32 * 5508 * * * * 6186 0 0 K 47 4902 * 3588 3733 6052 3979 * 5906 1645 5565 5793 2795 5407 4385 4728 3914 4860 * * * 47 82 4756 5785 0 * 0 * 6148 1687 1000 A 48 791 * * * * 5104 * * 3819 3845 6058 * * * * 4469 4017 * * 2935 48 24 5914 * 0 * * 0 6147 1000 1000 R 49 * * 1174 * * 4225 4832 6054 4763 * * 2965 * 6416 4132 2448 4792 * * * 49 0 * * * * * 0 6146 0 1000 R 50 4526 5093 * 4963 5868 2602 5353 5583 3841 * * * 2552 * 1645 5930 5230 4888 5743 6304 50 0 * * * * 0 * 6146 0 1000 E 51 4667 * 5213 3071 * 4949 5928 2454 3439 3240 5302 * 5508 4309 6076 4670 3731 2661 * * 51 0 * * * * * * 6186 0 0 D 52 * 5876 1537 2399 * * 5976 * 2665 * * 4574 * 2683 * 4348 6073 6191 * * 52 0 * * * * * * 6186 0 0 L 53 * * * * * * * 2704 * 938 5560 * * * * * 3209 2357 * * 53 0 * * * * * * 6186 0 0 A 54 795 * 5940 * * * * 5456 * 5935 * * * * * 5285 4213 1792 * * 54 0 * * * * * * 6186 0 0 N 55 * * 1433 2860 5970 * 4806 * 5803 5876 * 3329 * 5469 5327 2609 3405 * * * 55 0 * * * * * * 6186 0 0 L 56 * 4959 * * * * 6046 3395 3384 968 4716 * * 4131 5508 6290 5964 4868 6720 4032 56 0 * * * * * * 6186 0 0 M 57 * * * * 5778 * * 4072 * 1003 1296 * * 5940 * * * * * * 57 0 * * * * * * 6186 0 0 K 58 6358 * 5371 2816 * 5456 4388 2376 4971 3545 6322 6445 5805 * * 5263 3561 1858 * 6342 58 0 * * * * * * 6186 0 0 K 59 3663 * 2976 2016 * 4675 * 5805 3236 6380 * 5886 * 2955 6459 2983 3510 * * * 59 0 * * * * * * 6186 0 0 Y 60 4946 4927 * * 3667 * 2161 * 3029 4140 6603 6057 * 3748 5158 3428 4041 6289 * 2652 60 0 * * * * * * 6186 0 0 Y 61 4990 3258 * * 1603 * * * * 5563 * 5372 * * * 4985 * * * 1127 61 0 * * * * * * 6186 0 0 P 62 6039 * 4296 4867 * 1409 * * 4931 6041 * 5108 1917 * 4141 3683 5181 * * 5714 62 18 * 6346 * * * * 6174 0 0 G 63 3575 5595 6198 1386 * 2795 * 5612 3932 * 5995 6049 3487 4402 * 3496 6247 * * * 63 19 * 6239 * * 0 * 6164 0 1000 E 64 4331 * 2978 2556 * 4162 * * 2673 * * 5169 4780 3260 3691 3393 5098 4904 * 4759 64 31 * 5553 * * 0 * 6082 0 1000 K 65 2962 * 6046 4075 6153 2899 * * 4441 4455 * 5825 5959 3093 3364 3846 * 5528 3803 2770 65 0 * * * * 0 * 6071 0 1477 A 66 535 4908 * * 5669 3262 * 3847 * * * * * * * 5545 5892 4484 * * 66 0 * * * * * * 6082 0 0 W 67 4439 * * 5890 * 4335 * 6133 5619 3009 3610 * * * 6268 * * 1804 1525 * 67 0 * * * * * * 6082 0 0 S 68 4138 * 2079 3323 * 5156 * * 2488 * 3656 3070 * 5235 3956 4016 5014 5776 * * 68 0 * * * * * * 6082 0 0 V 69 3554 * * * * * * 2597 3148 2776 3125 * * 6058 * * 4531 1654 * * 69 0 * * * * * * 6082 0 0 S 70 1816 * * * 5669 * * * * 3141 6294 * 5012 * * 4460 1252 3756 * * 70 0 * * * * * * 6082 0 0 L 71 4980 * * * 4395 * * 1993 6086 1407 * * * 5654 4912 5573 * 2296 * * 71 0 * * * * * * 6066 0 0 K 72 4782 * 2969 3065 * 4416 4523 * 2610 5310 * 3325 * 3149 3827 3117 * * 5355 6120 72 0 * * * * * * 6066 0 0 I 73 * 5792 * * * 4694 * 1051 * 2936 * * * * * * 3056 2254 * * 73 0 * * * * * * 6066 0 0 F 74 * 5083 * * 1383 * * * * 1093 * * * 5295 * * * * 4086 4878 74 0 * * * * * * 5973 0 0 G 75 3963 * * 1615 * 4632 4800 * 2742 4427 * * * 3568 2225 5584 * * * 5779 75 0 * * * * * * 5973 0 0 K 76 2767 * 4338 3790 5535 7356 6285 4627 1814 * 5584 3844 * 3017 3824 5011 4980 5744 * * 76 0 * * * * * * 5973 0 0 M 77 5958 * * * * * * 1451 5673 3795 1060 * * * * * 5623 5238 * * 77 147 3368 * 0 * * * 5973 1913 0 N 78 * * 3661 4861 * 2628 4945 * 3666 * * 1005 * 5908 4818 4378 6045 * * * 78 0 * * * * * * 5972 0 0 L 79 4906 3770 * 5565 * * 6043 5642 4639 1208 * * * 2362 2742 * * * * 5648 79 0 * * * * * * 5940 0 0 K 80 * * 4782 4282 * 5865 * 5645 2351 5741 4662 2277 * 4388 2509 3989 3252 5431 * * 80 0 * * * * * * 5933 0 0 V 81 4569 * 1309 2491 * 5853 4642 * 4023 4591 * 5071 * 4804 5274 3403 5814 6353 * * 81 0 * * * * * * 5933 0 0 L 82 * * * * * * * 4808 * 356 4515 * * * * * 5370 3117 * * 82 0 * * * * * * 5894 0 0 C 83 1198 2286 * * * * * 5590 * * 6410 * * * * 2320 5489 4668 4761 5165 83 0 * * * * * * 5869 0 0 E 84 3890 * 4042 1087 * 4652 * 4605 3131 5648 6697 4736 * * 4826 * 4452 4108 * * 84 0 * * * * * * 5869 0 0 R 85 * * * 2569 * 5535 * * 1783 5307 3524 5459 * 2507 2789 * 4716 5278 * * 85 0 * * * * * * 5801 0 0 A 86 1454 * * * 5250 5864 * 5226 * 1310 * * * * * * 5423 3194 * 5115 86 27 5767 * 0 * * * 5696 1000 0 K 87 * * 5213 3234 * 6042 4508 * 1893 4431 6309 * * 2234 2152 * * 4571 * * 87 0 * * * * * * 5696 0 0 E 88 2968 * 3115 2199 * * 5420 5655 3542 * * 3048 * * 2027 * 4514 * * * 88 24 5927 * 0 * * * 5664 1000 0 E 89 3942 * 4292 849 * * * * 2859 * * 5168 * 4022 3299 * * * * * 89 0 * * * * * * 5628 0 0 I 90 * * * * * * 4801 1505 * 2358 2306 * 3924 * * * 4333 3336 * * 90 0 * * * * * * 4713 0 0 N 91 * * * * * * 3579 * 1089 * * 1842 * 3616 3544 * * * * * 91 0 * * * * * * 4201 0 0 W 92 * * * 2498 * * * * * * * * * 1126 * * * * 1454 * 92 0 * * * * * * 3090 0 0 S 93 2498 * * * * 565 * * * * * * * * * 2765 * * * * 93 0 * * * * * * 3090 0 0 A 94 1070 * * * * * * * * * * * * * * 933 * * * * 94 0 * * 0 * * * 3090 0 0 //